Wall clock time and date at job start Sat Apr 11 2020 07:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 C 1.53003 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46895 * 305.00251 * 4 3 2 6 6 N 1.46492 * 109.46996 * 65.00011 * 4 3 2 7 7 C 1.34778 * 120.00351 * 274.99784 * 6 4 3 8 8 O 1.21349 * 119.99787 * 0.02562 * 7 6 4 9 9 C 1.49449 * 120.00001 * 180.02562 * 7 6 4 10 10 O 1.21347 * 120.00228 * 5.09493 * 9 7 6 11 11 N 1.34773 * 119.99639 * 185.09134 * 9 7 6 12 12 C 1.46511 * 119.99783 * 185.04025 * 11 9 7 13 13 C 1.52996 * 109.46925 * 184.78027 * 12 11 9 14 14 C 1.50698 * 115.55121 * 294.81537 * 13 12 11 15 15 H 1.07998 * 120.00066 * 95.19961 * 14 13 12 16 16 C 1.37881 * 119.99896 * 274.93004 * 14 13 12 17 17 N 1.31507 * 120.00408 * 355.41436 * 16 14 13 18 18 Si 1.86807 * 119.99877 * 175.41718 * 16 14 13 19 19 H 1.48500 * 109.47157 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46976 * 119.99565 * 18 16 14 21 21 H 1.48495 * 109.47153 * 239.99884 * 18 16 14 22 22 C 1.53001 * 117.50274 * 80.48703 * 13 12 11 23 23 C 1.53002 * 117.49925 * 149.14554 * 13 12 11 24 24 C 1.50702 * 109.46938 * 185.00230 * 4 3 2 25 25 C 1.38232 * 120.00076 * 279.72495 * 24 4 3 26 26 C 1.38235 * 119.99894 * 179.81325 * 25 24 4 27 27 C 1.38230 * 119.99837 * 0.39606 * 26 25 24 28 28 C 1.38236 * 120.00492 * 359.85940 * 27 26 25 29 29 C 1.38233 * 119.99572 * 100.00140 * 24 4 3 30 30 H 1.09008 * 109.46794 * 59.99429 * 1 2 3 31 31 H 1.08997 * 109.47149 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47199 * 299.99873 * 1 2 3 33 33 H 1.09005 * 109.47113 * 240.00410 * 2 1 3 34 34 H 1.08994 * 109.46866 * 120.00427 * 2 1 3 35 35 H 1.09005 * 109.46851 * 60.00249 * 3 2 1 36 36 H 1.08996 * 109.47218 * 300.00234 * 3 2 1 37 37 H 0.97003 * 120.00155 * 95.00486 * 6 4 3 38 38 H 0.96993 * 120.00562 * 5.04008 * 11 9 7 39 39 H 1.08991 * 109.46896 * 64.78025 * 12 11 9 40 40 H 1.09002 * 109.46987 * 304.77486 * 12 11 9 41 41 H 0.96998 * 120.00822 * 185.00545 * 17 16 14 42 42 H 1.08995 * 117.49983 * 215.00436 * 22 13 12 43 43 H 1.09003 * 117.49466 * 0.02562 * 22 13 12 44 44 H 1.09005 * 117.49794 * 359.97438 * 23 13 12 45 45 H 1.09000 * 117.49885 * 144.96827 * 23 13 12 46 46 H 1.07998 * 119.99560 * 0.02562 * 25 24 4 47 47 H 1.08000 * 120.00059 * 180.22943 * 26 25 24 48 48 H 1.08006 * 119.99912 * 179.83344 * 27 26 25 49 49 H 1.08001 * 120.00465 * 179.97438 * 28 27 26 50 50 H 1.07997 * 120.00670 * 359.97438 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 7 4.0588 0.8586 -1.2508 7 6 4.1877 -0.4780 -1.3658 8 8 3.8983 -1.1979 -0.4327 9 6 4.6869 -1.0736 -2.6423 10 8 5.0635 -0.3518 -3.5421 11 7 4.7188 -2.4124 -2.7941 12 6 5.3098 -2.9990 -3.9995 13 6 5.1129 -4.5161 -3.9775 14 6 5.8345 -5.2493 -2.8763 15 1 5.3207 -5.4813 -1.9551 16 6 7.1490 -5.6289 -3.0470 17 7 7.7456 -5.4321 -4.2023 18 14 8.0825 -6.4229 -1.6371 19 1 7.1927 -6.5312 -0.4531 20 1 8.5338 -7.7781 -2.0433 21 1 9.2631 -5.5901 -1.2939 22 6 3.7494 -5.0580 -4.4115 23 6 4.9669 -5.2291 -5.3233 24 6 4.0723 2.8580 0.1245 25 6 4.1125 3.6770 -0.9883 26 6 4.5695 4.9766 -0.8738 27 6 4.9941 5.4545 0.3518 28 6 4.9589 4.6338 1.4636 29 6 4.4981 3.3354 1.3499 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 4.2899 1.4340 -1.9968 38 1 4.3505 -2.9875 -2.1054 39 1 6.3752 -2.7713 -4.0295 40 1 4.8242 -2.5824 -4.8820 41 1 8.6456 -5.7640 -4.3463 42 1 3.3744 -5.9446 -3.9005 43 1 2.9928 -4.3336 -4.7131 44 1 5.0108 -4.6173 -6.2244 45 1 5.3933 -6.2283 -5.4124 46 1 3.7835 3.3026 -1.9464 47 1 4.5975 5.6177 -1.7425 48 1 5.3537 6.4690 0.4407 49 1 5.2910 5.0071 2.4211 50 1 4.4706 2.6943 2.2186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116974596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:29 Heat of formation + Delta-G solvation = -50.144573 kcal Electronic energy + Delta-G solvation = -29954.663826 eV Core-core repulsion = 25946.380004 eV Total energy + Delta-G solvation = -4008.283822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91539 -40.52094 -39.55663 -38.47613 -37.19275 -35.21998 -34.52602 -33.96896 -32.48138 -31.77268 -29.37103 -28.62771 -27.41769 -25.73433 -24.38020 -23.57808 -22.91949 -22.25124 -21.57122 -21.37780 -21.11067 -19.60978 -18.21822 -17.90413 -17.66671 -17.21572 -16.80408 -16.64930 -16.25317 -15.99857 -15.94465 -15.64724 -15.37782 -15.19397 -14.77329 -14.49333 -14.35914 -14.26169 -14.15745 -13.70740 -13.68884 -13.48996 -13.32764 -12.95406 -12.87480 -12.81187 -12.66066 -12.50595 -12.36176 -12.19072 -12.02041 -11.92510 -11.59850 -11.52162 -11.42314 -10.97804 -10.74397 -10.46638 -10.32311 -10.12000 -9.97220 -9.83526 -9.67532 -8.11582 -6.25137 0.33319 0.39950 0.48455 1.38715 1.39555 1.43745 1.52827 2.17581 2.40939 2.68349 2.87857 3.16087 3.41621 3.46830 3.59909 3.89693 4.00667 4.12127 4.15556 4.19196 4.22240 4.31682 4.40056 4.50720 4.61328 4.61718 4.66254 4.67955 4.69067 4.76775 4.90807 4.91992 4.97778 5.01605 5.05303 5.10799 5.17515 5.26852 5.27886 5.33470 5.35470 5.49558 5.52054 5.54471 5.62132 5.63297 5.68028 5.76699 5.99349 6.08722 6.35078 6.44665 6.77368 6.82690 7.00016 7.44675 8.95174 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.002610 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.069692 B =10727.344878 C =11315.542505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.186 3.814 5 H 0.090 0.910 6 N -0.685 5.685 7 C 0.516 3.484 8 O -0.526 6.526 9 C 0.494 3.506 10 O -0.558 6.558 11 N -0.668 5.668 12 C 0.175 3.825 13 C -0.002 4.002 14 C -0.507 4.507 15 H 0.058 0.942 16 C 0.028 3.972 17 N -0.903 5.903 18 Si 0.945 3.055 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.287 1.287 22 C -0.180 4.180 23 C -0.146 4.146 24 C -0.103 4.103 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.415 0.585 38 H 0.415 0.585 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.260 0.740 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.126 0.874 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.144 0.856 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 21.069 9.775 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.153 4.153 4 C 0.083 3.917 5 H 0.108 0.892 6 N -0.339 5.339 7 C 0.297 3.703 8 O -0.403 6.403 9 C 0.275 3.725 10 O -0.438 6.438 11 N -0.318 5.318 12 C 0.052 3.948 13 C -0.003 4.003 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.173 4.173 17 N -0.541 5.541 18 Si 0.771 3.229 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.213 1.213 22 C -0.217 4.217 23 C -0.184 4.184 24 C -0.104 4.104 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.140 4.140 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.253 0.747 38 H 0.252 0.748 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.144 0.856 47 H 0.158 0.842 48 H 0.161 0.839 49 H 0.162 0.838 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.643 21.062 9.740 25.529 hybrid contribution 0.986 -0.887 0.225 1.345 sum -9.658 20.175 9.965 24.487 Atomic orbital electron populations 1.21756 0.94904 1.01661 1.02198 1.21570 0.96313 0.96315 1.01647 1.22000 0.92234 0.97267 1.03823 1.20059 0.94880 0.90588 0.86186 0.89162 1.45887 1.64800 1.05507 1.17725 1.19880 0.78806 0.83967 0.87672 1.90765 1.48646 1.60872 1.39969 1.20424 0.80299 0.83629 0.88193 1.90693 1.49535 1.60778 1.42785 1.45788 1.57273 1.05586 1.23153 1.20821 0.95948 0.93304 0.84761 1.19063 0.95850 0.89553 0.95836 1.20683 0.95950 1.37142 1.00670 0.92410 1.25630 0.98219 0.96029 0.97410 1.70085 1.14178 1.45790 1.24012 0.85706 0.78688 0.78011 0.80469 1.19091 1.20629 1.21315 1.23016 0.91053 1.02849 1.04823 1.22397 1.01265 1.01043 0.93686 1.19826 1.01132 0.94381 0.95015 1.21127 1.00231 0.94590 0.98238 1.21426 0.98406 0.95497 0.98788 1.21539 0.98981 1.00915 0.92663 1.21452 0.99094 0.93554 0.99934 1.21222 0.98448 0.96858 0.96988 0.92581 0.93192 0.91585 0.94065 0.92487 0.89013 0.90876 0.74725 0.74839 0.94273 0.92707 0.93074 0.89905 0.89226 0.90676 0.91586 0.85599 0.84170 0.83873 0.83841 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.67 4.54 30.60 0.14 -2.53 16 3 C -0.12 -2.06 4.87 30.60 0.15 -1.91 16 4 C 0.19 3.80 2.46 44.25 0.11 3.91 16 5 H 0.09 2.06 7.44 -2.39 -0.02 2.04 16 6 N -0.68 -16.95 4.97 -447.44 -2.22 -19.17 16 7 C 0.52 16.37 6.46 87.27 0.56 16.93 16 8 O -0.53 -18.13 13.64 -3.24 -0.04 -18.17 16 9 C 0.49 18.41 7.88 87.27 0.69 19.10 16 10 O -0.56 -22.56 16.47 -3.24 -0.05 -22.61 16 11 N -0.67 -26.66 5.46 -464.41 -2.54 -29.20 16 12 C 0.18 7.83 5.53 86.38 0.48 8.31 16 13 C 0.00 -0.11 1.47 -52.93 -0.08 -0.19 16 14 C -0.51 -26.38 8.59 25.60 0.22 -26.16 16 15 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 16 C 0.03 1.51 5.43 84.66 0.46 1.97 16 17 N -0.90 -50.51 12.65 21.45 0.27 -50.24 16 18 Si 0.94 43.03 29.54 68.60 2.03 45.05 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 C -0.18 -7.24 9.96 30.62 0.30 -6.94 16 23 C -0.15 -6.56 9.14 30.62 0.28 -6.28 16 24 C -0.10 -1.84 4.96 -19.87 -0.10 -1.94 16 25 C -0.12 -2.07 9.06 22.27 0.20 -1.86 16 26 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 27 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 28 C -0.12 -1.65 10.05 22.27 0.22 -1.42 16 29 C -0.12 -1.86 9.67 22.27 0.22 -1.64 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.04 1.11 5.65 -2.38 -0.01 1.10 16 34 H 0.06 1.39 7.84 -2.39 -0.02 1.38 16 35 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 9.61 6.34 -92.71 -0.59 9.02 16 38 H 0.42 16.33 7.83 -92.71 -0.73 15.61 16 39 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 2.34 8.05 -2.39 -0.02 2.32 16 41 H 0.26 13.98 8.32 -92.71 -0.77 13.21 16 42 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 45 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 46 H 0.13 1.93 6.90 -2.91 -0.02 1.91 16 47 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 48 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 49 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 50 H 0.13 1.79 8.04 -2.91 -0.02 1.77 16 Total: -1.00 -62.06 413.93 2.09 -59.97 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.36 Total: 39.90 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.01 Total: -5.53 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -4.49 Total: -98.61 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.10 Total: -40.78 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.06 2.09 -59.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116974596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.830 kcal (2) G-P(sol) polarization free energy of solvation -62.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds