Wall clock time and date at job start Sat Apr 11 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46792 * 2 1 4 4 H 1.08993 * 109.40704 * 55.10389 * 3 2 1 5 5 C 1.50814 * 109.43539 * 175.00257 * 3 2 1 6 6 C 1.38837 * 117.80026 * 289.04257 * 5 3 2 7 7 C 1.37955 * 120.50276 * 178.93655 * 6 5 3 8 8 C 1.38271 * 119.71782 * 0.28124 * 7 6 5 9 9 C 1.37910 * 119.82677 * 359.66101 * 8 7 6 10 10 C 1.37667 * 122.34483 * 108.39101 * 5 3 2 11 11 C 1.50600 * 122.86111 * 1.57685 * 10 5 3 12 12 C 1.52783 * 110.86368 * 339.79926 * 11 10 5 13 13 N 1.46689 * 109.43612 * 295.20198 * 3 2 1 14 14 C 1.34776 * 121.33092 * 104.39426 * 13 3 2 15 15 O 1.21355 * 119.99932 * 173.47210 * 14 13 3 16 16 C 1.49450 * 120.00156 * 353.46796 * 14 13 3 17 17 O 1.21343 * 120.00271 * 353.81384 * 16 14 13 18 18 N 1.34782 * 120.00016 * 173.81376 * 16 14 13 19 19 C 1.46498 * 119.99836 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46720 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.46759 * 180.02562 * 20 19 18 22 22 C 1.50706 * 109.46998 * 179.97438 * 21 20 19 23 23 H 1.08000 * 119.99841 * 359.97438 * 22 21 20 24 24 C 1.37877 * 119.99926 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99982 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99705 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47398 * 90.00460 * 26 24 22 28 28 H 1.48503 * 109.46949 * 210.00038 * 26 24 22 29 29 H 1.48495 * 109.47637 * 329.99904 * 26 24 22 30 30 H 1.08996 * 109.47708 * 300.00043 * 1 2 3 31 31 H 1.09000 * 109.47180 * 60.00135 * 1 2 3 32 32 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47467 * 240.00403 * 2 1 3 34 34 H 1.09000 * 109.47180 * 119.99865 * 2 1 3 35 35 H 1.07997 * 119.74949 * 358.95588 * 6 5 3 36 36 H 1.08005 * 120.14161 * 180.02562 * 7 6 5 37 37 H 1.07996 * 120.08184 * 179.97438 * 8 7 6 38 38 H 1.08000 * 119.70894 * 180.28757 * 9 8 7 39 39 H 1.08993 * 109.19913 * 100.15749 * 11 10 5 40 40 H 1.09000 * 109.19820 * 219.44977 * 11 10 5 41 41 H 1.09005 * 109.77294 * 167.05250 * 12 11 10 42 42 H 1.08998 * 109.77212 * 287.78833 * 12 11 10 43 43 H 0.96998 * 119.99642 * 0.02562 * 18 16 14 44 44 H 1.08995 * 109.47516 * 300.00266 * 19 18 16 45 45 H 1.09001 * 109.46793 * 60.00652 * 19 18 16 46 46 H 1.09002 * 109.47364 * 299.99938 * 20 19 18 47 47 H 1.08995 * 109.47511 * 60.00559 * 20 19 18 48 48 H 1.09008 * 109.47071 * 299.99555 * 21 20 19 49 49 H 1.08992 * 109.47543 * 59.99771 * 21 20 19 50 50 H 0.97000 * 119.99870 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6061 1.9800 0.8432 5 6 3.5429 1.4435 0.1239 6 6 4.0922 1.0771 1.3452 7 6 5.4608 1.0374 1.5138 8 6 6.2912 1.3709 0.4597 9 6 5.7467 1.7338 -0.7543 10 6 4.3683 1.7787 -0.9257 11 6 3.8457 2.2051 -2.2723 12 6 2.4014 1.7459 -2.4657 13 7 1.6472 2.0991 -1.2516 14 6 0.6365 2.9899 -1.2886 15 8 0.4081 3.6064 -2.3086 16 6 -0.2030 3.2185 -0.0735 17 8 -0.0488 2.5244 0.9098 18 7 -1.1314 4.1956 -0.0698 19 6 -1.9546 4.4193 1.1211 20 6 -2.9209 5.5771 0.8629 21 6 -3.7803 5.8111 2.1070 22 6 -4.7317 6.9519 1.8529 23 1 -4.7238 7.4596 0.8997 24 6 -5.6122 7.3476 2.8374 25 7 -5.6214 6.7298 3.9984 26 14 -6.7919 8.7612 2.5222 27 1 -8.0564 8.2327 1.9506 28 1 -7.0805 9.4595 3.8007 29 1 -6.1767 9.7154 1.5651 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.4431 0.8208 2.1694 36 1 5.8819 0.7512 2.4663 37 1 7.3635 1.3423 0.5853 38 1 6.3972 1.9894 -1.5777 39 1 3.8893 3.2916 -2.3460 40 1 4.4683 1.7682 -3.0531 41 1 1.9668 2.2496 -3.3292 42 1 2.3746 0.6667 -2.6164 43 1 -1.2548 4.7502 -0.8560 44 1 -2.5220 3.5161 1.3455 45 1 -1.3116 4.6639 1.9666 46 1 -2.3538 6.4805 0.6383 47 1 -3.5639 5.3322 0.0176 48 1 -4.3475 4.9078 2.3319 49 1 -3.1372 6.0562 2.9521 50 1 -6.2406 7.0084 4.6911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117267522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:34 Heat of formation + Delta-G solvation = -50.356839 kcal Electronic energy + Delta-G solvation = -30145.150430 eV Core-core repulsion = 26136.857403 eV Total energy + Delta-G solvation = -4008.293027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39801 -39.86619 -38.48872 -37.03474 -35.55317 -34.31542 -33.36561 -32.12703 -31.28963 -31.20272 -29.60000 -27.35434 -26.32173 -24.90436 -23.69833 -22.92238 -22.31215 -21.78894 -20.85474 -20.54747 -19.24488 -17.63608 -17.39739 -16.57630 -16.43753 -16.33351 -15.65372 -15.60645 -15.29928 -15.21652 -14.72925 -14.47699 -14.30212 -14.18893 -13.90102 -13.72244 -13.58280 -13.40607 -12.89127 -12.72125 -12.50629 -12.32759 -11.98628 -11.95522 -11.90745 -11.82138 -11.62297 -11.40466 -11.21121 -11.00496 -10.91579 -10.78705 -10.73697 -10.60386 -9.91528 -9.67618 -9.34230 -9.17388 -9.11328 -9.01478 -8.93558 -8.75907 -8.39190 -6.04006 -4.06943 1.05571 1.08397 1.37605 2.21916 3.14949 3.30294 3.36602 3.38211 3.40945 3.44284 4.24840 4.31000 4.40868 4.43863 4.53591 4.70769 4.77724 4.85737 4.90533 4.99700 5.12600 5.18152 5.22796 5.30658 5.32081 5.41731 5.51012 5.56628 5.58023 5.66691 5.68078 5.71950 5.80871 5.87833 5.94387 6.05516 6.06760 6.19858 6.21378 6.22828 6.29581 6.43380 6.51991 6.70351 6.72147 6.91856 6.93994 7.28622 7.60082 7.67768 7.71623 7.94279 8.03180 8.35566 8.99511 9.57495 11.07253 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.002049 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.044713 B =13661.716510 C =13972.154671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.150 3.850 4 H 0.151 0.849 5 C -0.085 4.085 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.121 4.121 9 C -0.121 4.121 10 C -0.074 4.074 11 C -0.096 4.096 12 C 0.108 3.892 13 N -0.579 5.579 14 C 0.514 3.486 15 O -0.522 6.522 16 C 0.500 3.500 17 O -0.513 6.513 18 N -0.689 5.689 19 C 0.114 3.886 20 C -0.123 4.123 21 C 0.025 3.975 22 C -0.523 4.523 23 H 0.056 0.944 24 C 0.057 3.943 25 N -0.894 5.894 26 Si 0.893 3.107 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.411 0.589 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.769 -15.278 -10.580 30.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.047 3.953 4 H 0.168 0.832 5 C -0.086 4.086 6 C -0.127 4.127 7 C -0.139 4.139 8 C -0.139 4.139 9 C -0.139 4.139 10 C -0.075 4.075 11 C -0.133 4.133 12 C -0.014 4.014 13 N -0.313 5.313 14 C 0.297 3.703 15 O -0.397 6.397 16 C 0.280 3.720 17 O -0.391 6.391 18 N -0.340 5.340 19 C -0.008 4.008 20 C -0.161 4.161 21 C -0.013 4.013 22 C -0.561 4.561 23 H 0.074 0.926 24 C -0.145 4.145 25 N -0.533 5.533 26 Si 0.721 3.279 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.199 1.199 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.247 0.753 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 23.620 -15.404 -10.257 30.006 hybrid contribution -0.556 0.952 -0.461 1.195 sum 23.064 -14.452 -10.719 29.252 Atomic orbital electron populations 1.21901 0.94716 1.01143 1.03171 1.21756 0.97050 0.94518 1.02213 1.21132 0.90106 0.95687 0.88332 0.83245 1.19862 0.94979 1.00045 0.93710 1.21074 0.95351 0.99636 0.96630 1.21085 0.93469 1.00311 0.99004 1.21070 0.99741 0.99770 0.93313 1.21147 0.94199 1.00711 0.97800 1.19487 0.93194 0.99657 0.95128 1.20813 0.95965 1.02182 0.94355 1.21692 0.90661 1.00965 0.88080 1.47899 1.31991 1.41182 1.10191 1.20258 0.81219 0.79815 0.88996 1.90752 1.69370 1.46545 1.33056 1.19975 0.82071 0.81947 0.87973 1.90525 1.67361 1.46083 1.35171 1.46103 1.35514 1.33229 1.19163 1.21851 0.92818 1.00408 0.85696 1.21931 0.96890 0.95077 1.02219 1.19028 0.93929 0.97148 0.91169 1.21199 1.18653 1.16445 0.99794 0.92583 1.25025 0.97435 0.96865 0.95138 1.69960 1.37520 1.41253 1.04559 0.86573 0.81307 0.82403 0.77595 1.20645 1.21208 1.19870 0.89979 0.93849 0.93229 0.92319 0.90636 0.85600 0.85888 0.86128 0.86201 0.89968 0.89445 0.88185 0.90332 0.75343 0.91016 0.91024 0.92457 0.92432 0.96209 0.96206 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.59 37.15 0.32 -1.33 16 2 C -0.12 -1.11 5.44 -26.73 -0.15 -1.26 16 3 C 0.15 1.59 1.99 -68.92 -0.14 1.46 16 4 H 0.15 1.87 4.75 -52.85 -0.25 1.62 16 5 C -0.09 -0.85 5.17 -104.55 -0.54 -1.39 16 6 C -0.11 -0.98 9.17 -39.46 -0.36 -1.35 16 7 C -0.12 -0.97 10.05 -39.67 -0.40 -1.37 16 8 C -0.12 -0.93 10.04 -39.69 -0.40 -1.33 16 9 C -0.12 -0.97 9.59 -39.43 -0.38 -1.35 16 10 C -0.07 -0.68 5.76 -104.60 -0.60 -1.29 16 11 C -0.10 -0.75 5.87 -28.04 -0.16 -0.91 16 12 C 0.11 0.96 6.29 -3.76 -0.02 0.93 16 13 N -0.58 -6.48 2.18 -167.27 -0.36 -6.84 16 14 C 0.51 6.92 6.96 -11.59 -0.08 6.84 16 15 O -0.52 -7.87 16.00 5.49 0.09 -7.78 16 16 C 0.50 7.16 7.36 -11.58 -0.09 7.07 16 17 O -0.51 -7.67 10.12 5.50 0.06 -7.61 16 18 N -0.69 -10.01 5.55 -60.73 -0.34 -10.35 16 19 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 20 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 21 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 22 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 23 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 24 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 25 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 26 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 30 H 0.08 1.04 5.97 -51.93 -0.31 0.73 16 31 H 0.04 0.51 6.96 -51.93 -0.36 0.15 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 7.21 -51.93 -0.37 0.15 16 34 H 0.08 0.64 7.78 -51.93 -0.40 0.24 16 35 H 0.13 1.01 8.05 -52.49 -0.42 0.58 16 36 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.73 8.05 -52.49 -0.42 0.31 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 41 H 0.10 0.92 7.11 -51.93 -0.37 0.55 16 42 H 0.08 0.59 7.25 -51.93 -0.38 0.22 16 43 H 0.41 5.57 7.96 -40.82 -0.32 5.24 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -31.04 397.26 -10.37 -41.41 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.81 Total: 3.22 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.71 Total: -8.67 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.03 Total: -42.95 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.14 Total: -15.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.04 -10.37 -41.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117267522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.944 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds