Wall clock time and date at job start Sat Apr 11 2020 07:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46792 * 2 1 4 4 H 1.08993 * 109.40704 * 55.10389 * 3 2 1 5 5 C 1.50814 * 109.43539 * 175.00257 * 3 2 1 6 6 C 1.38837 * 117.80026 * 289.04257 * 5 3 2 7 7 C 1.37955 * 120.50276 * 178.93655 * 6 5 3 8 8 C 1.38271 * 119.71782 * 0.28124 * 7 6 5 9 9 C 1.37910 * 119.82677 * 359.66101 * 8 7 6 10 10 C 1.37667 * 122.34483 * 108.39101 * 5 3 2 11 11 C 1.50600 * 122.86111 * 1.57685 * 10 5 3 12 12 C 1.52783 * 110.86368 * 339.79926 * 11 10 5 13 13 N 1.46689 * 109.43612 * 295.20198 * 3 2 1 14 14 C 1.34776 * 121.33092 * 104.39426 * 13 3 2 15 15 O 1.21355 * 119.99932 * 173.47210 * 14 13 3 16 16 C 1.49450 * 120.00156 * 353.46796 * 14 13 3 17 17 O 1.21343 * 120.00271 * 353.81384 * 16 14 13 18 18 N 1.34782 * 120.00016 * 173.81376 * 16 14 13 19 19 C 1.46498 * 119.99836 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46720 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.46759 * 180.02562 * 20 19 18 22 22 C 1.50706 * 109.46998 * 179.97438 * 21 20 19 23 23 H 1.08000 * 119.99841 * 359.97438 * 22 21 20 24 24 C 1.37877 * 119.99926 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99982 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99705 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47398 * 90.00460 * 26 24 22 28 28 H 1.48503 * 109.46949 * 210.00038 * 26 24 22 29 29 H 1.48495 * 109.47637 * 329.99904 * 26 24 22 30 30 H 1.08996 * 109.47708 * 300.00043 * 1 2 3 31 31 H 1.09000 * 109.47180 * 60.00135 * 1 2 3 32 32 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47467 * 240.00403 * 2 1 3 34 34 H 1.09000 * 109.47180 * 119.99865 * 2 1 3 35 35 H 1.07997 * 119.74949 * 358.95588 * 6 5 3 36 36 H 1.08005 * 120.14161 * 180.02562 * 7 6 5 37 37 H 1.07996 * 120.08184 * 179.97438 * 8 7 6 38 38 H 1.08000 * 119.70894 * 180.28757 * 9 8 7 39 39 H 1.08993 * 109.19913 * 100.15749 * 11 10 5 40 40 H 1.09000 * 109.19820 * 219.44977 * 11 10 5 41 41 H 1.09005 * 109.77294 * 167.05250 * 12 11 10 42 42 H 1.08998 * 109.77212 * 287.78833 * 12 11 10 43 43 H 0.96998 * 119.99642 * 0.02562 * 18 16 14 44 44 H 1.08995 * 109.47516 * 300.00266 * 19 18 16 45 45 H 1.09001 * 109.46793 * 60.00652 * 19 18 16 46 46 H 1.09002 * 109.47364 * 299.99938 * 20 19 18 47 47 H 1.08995 * 109.47511 * 60.00559 * 20 19 18 48 48 H 1.09008 * 109.47071 * 299.99555 * 21 20 19 49 49 H 1.08992 * 109.47543 * 59.99771 * 21 20 19 50 50 H 0.97000 * 119.99870 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6061 1.9800 0.8432 5 6 3.5429 1.4435 0.1239 6 6 4.0922 1.0771 1.3452 7 6 5.4608 1.0374 1.5138 8 6 6.2912 1.3709 0.4597 9 6 5.7467 1.7338 -0.7543 10 6 4.3683 1.7787 -0.9257 11 6 3.8457 2.2051 -2.2723 12 6 2.4014 1.7459 -2.4657 13 7 1.6472 2.0991 -1.2516 14 6 0.6365 2.9899 -1.2886 15 8 0.4081 3.6064 -2.3086 16 6 -0.2030 3.2185 -0.0735 17 8 -0.0488 2.5244 0.9098 18 7 -1.1314 4.1956 -0.0698 19 6 -1.9546 4.4193 1.1211 20 6 -2.9209 5.5771 0.8629 21 6 -3.7803 5.8111 2.1070 22 6 -4.7317 6.9519 1.8529 23 1 -4.7238 7.4596 0.8997 24 6 -5.6122 7.3476 2.8374 25 7 -5.6214 6.7298 3.9984 26 14 -6.7919 8.7612 2.5222 27 1 -8.0564 8.2327 1.9506 28 1 -7.0805 9.4595 3.8007 29 1 -6.1767 9.7154 1.5651 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.4431 0.8208 2.1694 36 1 5.8819 0.7512 2.4663 37 1 7.3635 1.3423 0.5853 38 1 6.3972 1.9894 -1.5777 39 1 3.8893 3.2916 -2.3460 40 1 4.4683 1.7682 -3.0531 41 1 1.9668 2.2496 -3.3292 42 1 2.3746 0.6667 -2.6164 43 1 -1.2548 4.7502 -0.8560 44 1 -2.5220 3.5161 1.3455 45 1 -1.3116 4.6639 1.9666 46 1 -2.3538 6.4805 0.6383 47 1 -3.5639 5.3322 0.0176 48 1 -4.3475 4.9078 2.3319 49 1 -3.1372 6.0562 2.9521 50 1 -6.2406 7.0084 4.6911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117267522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:32 Heat of formation + Delta-G solvation = -67.109130 kcal Electronic energy + Delta-G solvation = -30145.876863 eV Core-core repulsion = 26136.857403 eV Total energy + Delta-G solvation = -4009.019461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.34737 -40.72919 -39.55338 -37.94227 -36.93260 -35.25886 -35.00740 -33.07298 -32.91022 -31.91517 -30.31778 -28.97241 -27.34052 -26.02920 -24.91208 -23.83228 -23.34504 -22.58054 -22.31815 -21.62373 -20.28432 -18.64985 -18.49887 -18.22441 -17.44612 -17.41465 -16.71618 -16.54125 -16.41308 -16.29156 -16.00518 -15.76752 -15.36288 -15.12535 -14.78035 -14.71077 -14.46608 -14.26901 -14.15730 -13.78338 -13.68131 -13.57815 -13.36526 -13.19530 -12.80430 -12.74633 -12.63057 -12.55231 -12.53242 -12.40811 -12.24422 -11.95538 -11.68600 -11.66551 -11.64516 -11.51129 -11.22080 -10.54933 -10.45424 -10.24595 -9.98022 -9.61057 -9.47953 -8.19723 -6.30413 0.26635 0.41650 0.46441 1.20040 1.41845 1.42524 1.53630 2.04269 2.33429 2.42937 2.81256 3.14187 3.22910 3.52429 3.74136 3.88340 4.03213 4.07385 4.09569 4.18785 4.20202 4.24094 4.29330 4.42395 4.48999 4.53069 4.55828 4.65753 4.73609 4.75782 4.85469 4.91198 4.92048 4.93995 5.03295 5.07901 5.11842 5.14925 5.19559 5.24140 5.27958 5.48788 5.52739 5.57346 5.59734 5.64285 5.70846 5.84387 5.95785 6.10780 6.17686 6.24097 6.61574 6.86398 6.89293 7.38841 8.92115 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.002049 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.044713 B =13661.716510 C =13972.154671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.152 3.848 4 H 0.129 0.871 5 C -0.102 4.102 6 C -0.122 4.122 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.087 4.087 11 C -0.090 4.090 12 C 0.104 3.896 13 N -0.572 5.572 14 C 0.514 3.486 15 O -0.542 6.542 16 C 0.497 3.503 17 O -0.520 6.520 18 N -0.687 5.687 19 C 0.130 3.870 20 C -0.106 4.106 21 C 0.026 3.974 22 C -0.542 4.542 23 H 0.063 0.937 24 C -0.002 4.002 25 N -0.932 5.932 26 Si 0.964 3.036 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.263 1.263 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.417 0.583 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.065 0.935 48 H -0.003 1.003 49 H -0.003 1.003 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.494 -15.555 -12.062 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.049 3.951 4 H 0.146 0.854 5 C -0.103 4.103 6 C -0.140 4.140 7 C -0.144 4.144 8 C -0.141 4.141 9 C -0.142 4.142 10 C -0.087 4.087 11 C -0.127 4.127 12 C -0.017 4.017 13 N -0.304 5.304 14 C 0.297 3.703 15 O -0.420 6.420 16 C 0.279 3.721 17 O -0.398 6.398 18 N -0.339 5.339 19 C 0.007 3.993 20 C -0.144 4.144 21 C -0.012 4.012 22 C -0.580 4.580 23 H 0.081 0.919 24 C -0.199 4.199 25 N -0.573 5.573 26 Si 0.789 3.211 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.187 1.187 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.254 0.746 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.015 0.985 49 H 0.015 0.985 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 25.379 -15.705 -11.755 32.077 hybrid contribution -0.996 0.960 0.046 1.384 sum 24.384 -14.745 -11.709 30.807 Atomic orbital electron populations 1.21830 0.95820 1.01386 1.01423 1.21718 0.95859 0.94018 1.03256 1.21029 0.90989 0.95821 0.87240 0.85436 1.19854 0.94285 1.01567 0.94594 1.21219 0.96150 1.00082 0.96541 1.21364 0.93093 0.99891 1.00071 1.21415 1.00978 0.98758 0.92985 1.21428 0.93963 1.00151 0.98701 1.19693 0.93836 0.99809 0.95372 1.20811 0.95423 1.01786 0.94724 1.21926 0.91013 1.02012 0.86776 1.48001 1.31041 1.39978 1.11352 1.19996 0.81722 0.80393 0.88169 1.90739 1.70226 1.47657 1.33385 1.20236 0.81967 0.81549 0.88388 1.90554 1.67458 1.46196 1.35627 1.45911 1.35539 1.33773 1.18684 1.21457 0.92404 0.99077 0.86331 1.21641 0.96726 0.96472 0.99603 1.18923 0.93843 0.95448 0.92957 1.21675 1.19121 1.17114 1.00089 0.91878 1.25973 0.99392 0.99694 0.94880 1.70093 1.38581 1.43015 1.05576 0.85454 0.78951 0.79025 0.77656 1.19860 1.20920 1.18705 0.92063 0.95133 0.91987 0.91157 0.89599 0.85378 0.84128 0.83881 0.84116 0.90796 0.86639 0.88503 0.88605 0.74632 0.91592 0.91593 0.91640 0.91610 0.98501 0.98495 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.59 71.98 0.62 -2.56 16 2 C -0.11 -2.00 5.44 30.59 0.17 -1.84 16 3 C 0.15 3.17 1.99 44.25 0.09 3.26 16 4 H 0.13 3.27 4.75 -16.98 -0.08 3.19 16 5 C -0.10 -1.93 5.17 -19.82 -0.10 -2.03 16 6 C -0.12 -2.09 9.17 22.35 0.20 -1.89 16 7 C -0.13 -1.80 10.05 22.21 0.22 -1.58 16 8 C -0.12 -1.59 10.04 22.20 0.22 -1.37 16 9 C -0.12 -1.69 9.59 22.37 0.21 -1.48 16 10 C -0.09 -1.43 5.76 -19.85 -0.11 -1.55 16 11 C -0.09 -1.23 5.87 29.74 0.17 -1.05 16 12 C 0.10 1.69 6.29 86.17 0.54 2.23 16 13 N -0.57 -12.50 2.18 -801.49 -1.75 -14.24 16 14 C 0.51 13.87 6.96 87.27 0.61 14.47 16 15 O -0.54 -16.29 16.00 -3.26 -0.05 -16.34 16 16 C 0.50 14.48 7.36 87.27 0.64 15.12 16 17 O -0.52 -15.98 10.12 -3.22 -0.03 -16.01 16 18 N -0.69 -20.11 5.55 -464.42 -2.58 -22.68 16 19 C 0.13 4.37 5.67 86.38 0.49 4.86 16 20 C -0.11 -4.09 5.27 30.60 0.16 -3.93 16 21 C 0.03 1.33 4.97 29.85 0.15 1.48 16 22 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 23 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 24 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 25 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 26 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 29 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 30 H 0.06 1.58 5.97 -2.39 -0.01 1.57 16 31 H 0.03 0.72 6.96 -2.39 -0.02 0.70 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.12 7.21 -2.39 -0.02 1.11 16 34 H 0.09 1.39 7.78 -2.39 -0.02 1.37 16 35 H 0.13 2.02 8.05 -2.91 -0.02 1.99 16 36 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.14 1.25 8.05 -2.91 -0.02 1.23 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.12 0.92 8.10 -2.39 -0.02 0.90 16 41 H 0.10 1.67 7.11 -2.38 -0.02 1.65 16 42 H 0.10 1.24 7.25 -2.39 -0.02 1.22 16 43 H 0.42 11.22 7.96 -92.71 -0.74 10.48 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 49 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 50 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -67.27 397.26 3.03 -64.25 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.14 Total: 22.62 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 4.98 Total: -7.45 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -4.04 Total: -93.01 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.08 Total: -32.35 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -67.27 3.03 -64.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117267522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.860 kcal (2) G-P(sol) polarization free energy of solvation -67.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds