Wall clock time and date at job start Sat Apr 11 2020 07:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 H 1.08997 * 109.87560 * 45.98131 * 3 2 1 5 5 C 1.54321 * 109.88072 * 167.00241 * 3 2 1 6 6 C 1.55166 * 102.94236 * 141.76453 * 5 3 2 7 7 C 1.54911 * 101.61499 * 324.47654 * 6 5 3 8 8 H 1.08996 * 110.37005 * 278.19072 * 7 6 5 9 9 C 1.53003 * 110.36512 * 155.86452 * 7 6 5 10 10 N 1.47027 * 110.01091 * 284.88798 * 3 2 1 11 11 C 1.34777 * 125.64992 * 61.60254 * 10 3 2 12 12 O 1.21349 * 119.99864 * 201.62850 * 11 10 3 13 13 C 1.49450 * 119.99897 * 21.62759 * 11 10 3 14 14 O 1.21347 * 119.99954 * 8.04235 * 13 11 10 15 15 N 1.34777 * 120.00021 * 188.04466 * 13 11 10 16 16 C 1.46500 * 119.99938 * 179.97438 * 15 13 11 17 17 C 1.50703 * 109.46954 * 179.97438 * 16 15 13 18 18 C 1.38636 * 119.74770 * 269.73064 * 17 16 15 19 19 C 1.37620 * 120.24486 * 179.72265 * 18 17 16 20 20 C 1.40712 * 119.74568 * 0.57024 * 19 18 17 21 21 C 1.41400 * 120.24575 * 179.68314 * 20 19 18 22 22 H 1.07996 * 120.00068 * 172.91558 * 21 20 19 23 23 C 1.39943 * 119.99735 * 352.91793 * 21 20 19 24 24 N 1.30823 * 120.00214 * 333.85541 * 23 21 20 25 25 Si 1.86806 * 119.99763 * 153.86045 * 23 21 20 26 26 H 1.48497 * 109.46974 * 94.99592 * 25 23 21 27 27 H 1.48507 * 109.46656 * 214.99945 * 25 23 21 28 28 H 1.48495 * 109.46840 * 334.99469 * 25 23 21 29 29 C 1.40722 * 119.51271 * 359.70159 * 20 19 18 30 30 C 1.37617 * 119.74235 * 359.97438 * 29 20 19 31 31 H 1.08998 * 109.47322 * 66.14749 * 1 2 3 32 32 H 1.09004 * 109.47490 * 186.15418 * 1 2 3 33 33 H 1.09004 * 109.46897 * 306.15441 * 1 2 3 34 34 H 1.09004 * 109.46883 * 240.00092 * 2 1 3 35 35 H 1.08999 * 109.47479 * 120.00198 * 2 1 3 36 36 H 1.08996 * 110.72239 * 23.40401 * 5 3 2 37 37 H 1.08996 * 110.71871 * 260.12473 * 5 3 2 38 38 H 1.08998 * 111.00163 * 82.56876 * 6 5 3 39 39 H 1.08995 * 111.00371 * 206.38331 * 6 5 3 40 40 H 1.08996 * 109.46886 * 66.06102 * 9 7 6 41 41 H 1.09001 * 109.46862 * 186.05993 * 9 7 6 42 42 H 1.08999 * 109.47167 * 306.06253 * 9 7 6 43 43 H 0.97000 * 119.99547 * 359.97438 * 15 13 11 44 44 H 1.08997 * 109.47458 * 299.99960 * 16 15 13 45 45 H 1.09001 * 109.46894 * 60.00350 * 16 15 13 46 46 H 1.08000 * 119.87733 * 359.97438 * 18 17 16 47 47 H 1.08002 * 120.12526 * 180.27799 * 19 18 17 48 48 H 0.96994 * 119.99905 * 179.97438 * 24 23 21 49 49 H 1.07994 * 120.13004 * 180.02562 * 29 20 19 50 50 H 1.07999 * 119.87483 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4920 2.0293 0.7371 5 6 3.5481 1.4659 0.3264 6 6 4.0875 2.5854 -0.6029 7 6 3.2024 2.3999 -1.8607 8 1 3.5958 1.5990 -2.4867 9 6 3.1228 3.7064 -2.6530 10 7 1.8730 2.0352 -1.3351 11 6 0.6997 2.2160 -1.9732 12 8 0.6779 2.3368 -3.1804 13 6 -0.5744 2.2678 -1.1938 14 8 -0.5432 2.2940 0.0190 15 7 -1.7581 2.2854 -1.8380 16 6 -3.0072 2.3355 -1.0740 17 6 -4.1770 2.3466 -2.0240 18 6 -4.6820 3.5548 -2.4792 19 6 -5.7463 3.5768 -3.3514 20 6 -6.3297 2.3671 -3.7716 21 6 -7.4279 2.3776 -4.6622 22 1 -7.7997 1.4501 -5.0719 23 6 -8.0328 3.5898 -5.0129 24 7 -7.9708 4.6116 -4.1982 25 14 -8.9291 3.7489 -6.6441 26 1 -10.3775 3.4926 -6.4402 27 1 -8.7397 5.1204 -7.1812 28 1 -8.3823 2.7601 -7.6077 29 6 -5.8123 1.1469 -3.2986 30 6 -4.7431 1.1488 -2.4322 31 1 -0.3634 0.4156 -0.9399 32 1 -0.3634 -1.0218 0.1102 33 1 -0.3633 0.6063 0.8298 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 4.0099 0.5086 0.0850 37 1 3.7122 1.7214 1.3732 38 1 3.9344 3.5690 -0.1590 39 1 5.1395 2.4246 -0.8382 40 1 4.1067 3.9480 -3.0551 41 1 2.4135 3.5916 -3.4726 42 1 2.7916 4.5104 -1.9957 43 1 -1.7830 2.2648 -2.8075 44 1 -3.0726 1.4610 -0.4268 45 1 -3.0249 3.2399 -0.4658 46 1 -4.2360 4.4822 -2.1513 47 1 -6.1354 4.5190 -3.7082 48 1 -8.3898 5.4518 -4.4415 49 1 -6.2520 0.2127 -3.6149 50 1 -4.3446 0.2136 -2.0676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118164945.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:41 Heat of formation + Delta-G solvation = -40.536063 kcal Electronic energy + Delta-G solvation = -30335.601696 eV Core-core repulsion = 26327.734530 eV Total energy + Delta-G solvation = -4007.867166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.15780 -39.03547 -37.80150 -37.63106 -34.92445 -33.94082 -33.51447 -31.81072 -30.46644 -30.37107 -29.28561 -27.37366 -26.12911 -25.07841 -23.58070 -22.48003 -21.59789 -21.11484 -21.03494 -20.13318 -19.20385 -17.47798 -17.43525 -17.20512 -16.63414 -15.58494 -15.47941 -15.36804 -14.54271 -14.31765 -14.20534 -14.01841 -13.95792 -13.88935 -13.57400 -13.44360 -13.13854 -13.04248 -12.68459 -12.62244 -12.26126 -12.14276 -12.03995 -11.92548 -11.62183 -11.49784 -11.22590 -11.10682 -11.05813 -11.04375 -10.91073 -10.76505 -10.72329 -10.64091 -10.51090 -9.81112 -9.57417 -9.43135 -9.04512 -8.72087 -8.66828 -7.62147 -7.47652 -6.93359 -4.46478 1.56151 2.31108 2.67876 2.98139 3.01025 3.03939 3.12646 3.31578 3.71540 3.79749 4.24303 4.27007 4.44399 4.53558 4.72524 4.81120 4.94824 5.04543 5.09899 5.24870 5.27310 5.37239 5.46548 5.57404 5.62848 5.63452 5.67293 5.78627 5.86338 5.87978 5.89199 5.94989 6.01949 6.09451 6.20064 6.26878 6.27496 6.35675 6.37457 6.74515 6.86305 6.92430 7.20064 7.23573 7.36199 7.49789 7.50684 7.78332 7.93102 7.97244 8.09314 8.17298 8.28770 8.55184 8.78054 8.89678 9.92361 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.002207 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.199228 B =12681.666962 C =13314.538503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.131 4.131 3 C 0.128 3.872 4 H 0.101 0.899 5 C -0.129 4.129 6 C -0.129 4.129 7 C 0.135 3.865 8 H 0.077 0.923 9 C -0.169 4.169 10 N -0.597 5.597 11 C 0.527 3.473 12 O -0.514 6.514 13 C 0.498 3.502 14 O -0.526 6.526 15 N -0.688 5.688 16 C 0.186 3.814 17 C -0.260 4.260 18 C -0.075 4.075 19 C -0.196 4.196 20 C 0.110 3.890 21 C -0.446 4.446 22 H 0.081 0.919 23 C 0.076 3.924 24 N -0.770 5.770 25 Si 0.909 3.091 26 H -0.268 1.268 27 H -0.273 1.273 28 H -0.258 1.258 29 C -0.239 4.239 30 C -0.063 4.063 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.410 0.590 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.139 0.861 48 H 0.284 0.716 49 H 0.091 0.909 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.105 -3.124 6.742 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C 0.025 3.975 4 H 0.119 0.881 5 C -0.167 4.167 6 C -0.167 4.167 7 C 0.033 3.967 8 H 0.095 0.905 9 C -0.227 4.227 10 N -0.334 5.334 11 C 0.311 3.689 12 O -0.389 6.389 13 C 0.280 3.720 14 O -0.405 6.405 15 N -0.340 5.340 16 C 0.065 3.935 17 C -0.262 4.262 18 C -0.094 4.094 19 C -0.215 4.215 20 C 0.107 3.893 21 C -0.474 4.474 22 H 0.099 0.901 23 C -0.145 4.145 24 N -0.393 5.393 25 Si 0.732 3.268 26 H -0.193 1.193 27 H -0.198 1.198 28 H -0.181 1.181 29 C -0.259 4.259 30 C -0.082 4.082 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.247 0.753 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.156 0.844 48 H 0.095 0.905 49 H 0.109 0.891 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.904 -2.772 6.949 21.263 hybrid contribution -0.463 0.031 -1.156 1.246 sum 19.441 -2.741 5.792 20.470 Atomic orbital electron populations 1.22670 0.95005 1.01420 1.02325 1.21932 0.97234 0.95551 1.02190 1.21969 0.96284 0.94566 0.84664 0.88069 1.22739 0.94061 0.99445 1.00498 1.22871 0.99210 0.99695 0.94922 1.21946 0.81963 0.97452 0.95380 0.90472 1.22122 1.03174 0.95919 1.01466 1.48318 1.04969 1.61000 1.19086 1.20157 0.84370 0.77276 0.87120 1.90726 1.86702 1.47810 1.13640 1.19799 0.85055 0.79199 0.87983 1.90665 1.87121 1.49409 1.13295 1.46532 1.04952 1.70637 1.11892 1.20056 0.80045 1.00887 0.92509 1.18889 1.02738 0.93995 1.10557 1.20581 0.96288 0.94977 0.97585 1.21876 0.97955 0.99885 1.01784 1.17685 0.91163 0.91246 0.89195 1.19736 1.11576 0.93692 1.22380 0.90124 1.26074 0.95040 0.95304 0.98042 1.69802 1.32459 1.03444 1.33630 0.86286 0.79646 0.78946 0.81914 1.19349 1.19758 1.18135 1.20840 1.02285 0.96847 1.05888 1.20351 0.95820 0.95179 0.96840 0.93527 0.93752 0.89262 0.92079 0.90640 0.90489 0.89785 0.90290 0.89741 0.91341 0.90227 0.92345 0.75346 0.92009 0.91960 0.89529 0.84366 0.90511 0.89056 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.05 37.16 0.30 -1.70 16 2 C -0.13 -1.33 5.39 -26.73 -0.14 -1.48 16 3 C 0.13 1.31 2.69 -66.95 -0.18 1.13 16 4 H 0.10 1.19 6.48 -51.93 -0.34 0.86 16 5 C -0.13 -0.89 6.45 -24.89 -0.16 -1.05 16 6 C -0.13 -0.88 6.50 -24.58 -0.16 -1.04 16 7 C 0.13 1.31 3.69 -66.36 -0.25 1.07 16 8 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 9 C -0.17 -1.70 8.97 37.16 0.33 -1.37 16 10 N -0.60 -7.31 2.99 -156.02 -0.47 -7.78 16 11 C 0.53 8.04 6.40 -11.58 -0.07 7.97 16 12 O -0.51 -8.88 15.01 5.50 0.08 -8.80 16 13 C 0.50 7.99 4.86 -11.59 -0.06 7.94 16 14 O -0.53 -8.64 10.93 5.50 0.06 -8.58 16 15 N -0.69 -11.60 5.54 -61.91 -0.34 -11.94 16 16 C 0.19 3.32 5.79 -5.19 -0.03 3.29 16 17 C -0.26 -5.45 5.27 -104.33 -0.55 -6.00 16 18 C -0.08 -1.71 9.67 -39.66 -0.38 -2.10 16 19 C -0.20 -4.97 8.92 -38.87 -0.35 -5.31 16 20 C 0.11 2.86 5.71 -106.82 -0.61 2.25 16 21 C -0.45 -11.44 9.05 -37.74 -0.34 -11.79 16 22 H 0.08 1.99 7.97 -52.49 -0.42 1.57 16 23 C 0.08 1.82 5.16 -17.34 -0.09 1.73 16 24 N -0.77 -18.90 10.46 55.55 0.58 -18.32 16 25 Si 0.91 17.83 29.63 -169.99 -5.04 12.79 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 27 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 28 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 29 C -0.24 -5.71 9.80 -38.87 -0.38 -6.09 16 30 C -0.06 -1.37 9.67 -39.66 -0.38 -1.75 16 31 H 0.05 0.68 4.15 -51.93 -0.22 0.47 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.24 6.03 -51.93 -0.31 0.93 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.02 6.18 -51.93 -0.32 0.70 16 42 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.41 7.11 7.96 -40.82 -0.32 6.78 16 44 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 45 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 46 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 47 H 0.14 3.62 5.28 -52.49 -0.28 3.34 16 48 H 0.28 6.25 8.30 -40.82 -0.34 5.92 16 49 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 50 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 391.49 15.07 5.90 5.90 Total: -1.00 -27.38 391.49 -10.37 -37.76 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -7.65 Total: 13.25 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -3.50 Total: -14.29 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.23 Total: -38.04 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.14 Total: -17.37 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.04 Total: 12.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -27.38 -10.37 -37.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118164945.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.778 kcal (2) G-P(sol) polarization free energy of solvation -27.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds