Wall clock time and date at job start Sat Apr 11 2020 07:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 H 1.08997 * 109.87560 * 45.98131 * 3 2 1 5 5 C 1.54321 * 109.88072 * 167.00241 * 3 2 1 6 6 C 1.55166 * 102.94236 * 141.76453 * 5 3 2 7 7 C 1.54911 * 101.61499 * 324.47654 * 6 5 3 8 8 H 1.08996 * 110.37005 * 278.19072 * 7 6 5 9 9 C 1.53003 * 110.36512 * 155.86452 * 7 6 5 10 10 N 1.47027 * 110.01091 * 284.88798 * 3 2 1 11 11 C 1.34777 * 125.64992 * 61.60254 * 10 3 2 12 12 O 1.21349 * 119.99864 * 201.62850 * 11 10 3 13 13 C 1.49450 * 119.99897 * 21.62759 * 11 10 3 14 14 O 1.21347 * 119.99954 * 8.04235 * 13 11 10 15 15 N 1.34777 * 120.00021 * 188.04466 * 13 11 10 16 16 C 1.46500 * 119.99938 * 179.97438 * 15 13 11 17 17 C 1.50703 * 109.46954 * 179.97438 * 16 15 13 18 18 C 1.38636 * 119.74770 * 269.73064 * 17 16 15 19 19 C 1.37620 * 120.24486 * 179.72265 * 18 17 16 20 20 C 1.40712 * 119.74568 * 0.57024 * 19 18 17 21 21 C 1.41400 * 120.24575 * 179.68314 * 20 19 18 22 22 H 1.07996 * 120.00068 * 172.91558 * 21 20 19 23 23 C 1.39943 * 119.99735 * 352.91793 * 21 20 19 24 24 N 1.30823 * 120.00214 * 333.85541 * 23 21 20 25 25 Si 1.86806 * 119.99763 * 153.86045 * 23 21 20 26 26 H 1.48497 * 109.46974 * 94.99592 * 25 23 21 27 27 H 1.48507 * 109.46656 * 214.99945 * 25 23 21 28 28 H 1.48495 * 109.46840 * 334.99469 * 25 23 21 29 29 C 1.40722 * 119.51271 * 359.70159 * 20 19 18 30 30 C 1.37617 * 119.74235 * 359.97438 * 29 20 19 31 31 H 1.08998 * 109.47322 * 66.14749 * 1 2 3 32 32 H 1.09004 * 109.47490 * 186.15418 * 1 2 3 33 33 H 1.09004 * 109.46897 * 306.15441 * 1 2 3 34 34 H 1.09004 * 109.46883 * 240.00092 * 2 1 3 35 35 H 1.08999 * 109.47479 * 120.00198 * 2 1 3 36 36 H 1.08996 * 110.72239 * 23.40401 * 5 3 2 37 37 H 1.08996 * 110.71871 * 260.12473 * 5 3 2 38 38 H 1.08998 * 111.00163 * 82.56876 * 6 5 3 39 39 H 1.08995 * 111.00371 * 206.38331 * 6 5 3 40 40 H 1.08996 * 109.46886 * 66.06102 * 9 7 6 41 41 H 1.09001 * 109.46862 * 186.05993 * 9 7 6 42 42 H 1.08999 * 109.47167 * 306.06253 * 9 7 6 43 43 H 0.97000 * 119.99547 * 359.97438 * 15 13 11 44 44 H 1.08997 * 109.47458 * 299.99960 * 16 15 13 45 45 H 1.09001 * 109.46894 * 60.00350 * 16 15 13 46 46 H 1.08000 * 119.87733 * 359.97438 * 18 17 16 47 47 H 1.08002 * 120.12526 * 180.27799 * 19 18 17 48 48 H 0.96994 * 119.99905 * 179.97438 * 24 23 21 49 49 H 1.07994 * 120.13004 * 180.02562 * 29 20 19 50 50 H 1.07999 * 119.87483 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4920 2.0293 0.7371 5 6 3.5481 1.4659 0.3264 6 6 4.0875 2.5854 -0.6029 7 6 3.2024 2.3999 -1.8607 8 1 3.5958 1.5990 -2.4867 9 6 3.1228 3.7064 -2.6530 10 7 1.8730 2.0352 -1.3351 11 6 0.6997 2.2160 -1.9732 12 8 0.6779 2.3368 -3.1804 13 6 -0.5744 2.2678 -1.1938 14 8 -0.5432 2.2940 0.0190 15 7 -1.7581 2.2854 -1.8380 16 6 -3.0072 2.3355 -1.0740 17 6 -4.1770 2.3466 -2.0240 18 6 -4.6820 3.5548 -2.4792 19 6 -5.7463 3.5768 -3.3514 20 6 -6.3297 2.3671 -3.7716 21 6 -7.4279 2.3776 -4.6622 22 1 -7.7997 1.4501 -5.0719 23 6 -8.0328 3.5898 -5.0129 24 7 -7.9708 4.6116 -4.1982 25 14 -8.9291 3.7489 -6.6441 26 1 -10.3775 3.4926 -6.4402 27 1 -8.7397 5.1204 -7.1812 28 1 -8.3823 2.7601 -7.6077 29 6 -5.8123 1.1469 -3.2986 30 6 -4.7431 1.1488 -2.4322 31 1 -0.3634 0.4156 -0.9399 32 1 -0.3634 -1.0218 0.1102 33 1 -0.3633 0.6063 0.8298 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 4.0099 0.5086 0.0850 37 1 3.7122 1.7214 1.3732 38 1 3.9344 3.5690 -0.1590 39 1 5.1395 2.4246 -0.8382 40 1 4.1067 3.9480 -3.0551 41 1 2.4135 3.5916 -3.4726 42 1 2.7916 4.5104 -1.9957 43 1 -1.7830 2.2648 -2.8075 44 1 -3.0726 1.4610 -0.4268 45 1 -3.0249 3.2399 -0.4658 46 1 -4.2360 4.4822 -2.1513 47 1 -6.1354 4.5190 -3.7082 48 1 -8.3898 5.4518 -4.4415 49 1 -6.2520 0.2127 -3.6149 50 1 -4.3446 0.2136 -2.0676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118164945.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:40 Heat of formation + Delta-G solvation = -55.016017 kcal Electronic energy + Delta-G solvation = -30336.229594 eV Core-core repulsion = 26327.734530 eV Total energy + Delta-G solvation = -4008.495064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.25697 -40.21632 -39.36463 -38.88077 -36.48461 -35.22284 -34.74634 -32.68452 -32.16480 -31.23414 -31.12309 -28.98843 -27.05390 -26.37393 -24.98752 -23.37279 -22.89589 -22.57392 -21.96571 -21.81703 -20.39638 -19.33234 -18.55045 -18.16701 -17.76823 -17.26149 -16.69683 -16.63815 -16.02057 -15.71192 -15.57769 -15.18179 -15.09217 -14.94454 -14.80396 -14.47499 -14.32748 -14.17687 -13.87578 -13.85830 -13.66352 -13.34423 -13.33399 -13.08200 -12.93062 -12.74151 -12.71237 -12.58289 -12.47529 -12.16239 -12.01013 -11.87889 -11.69232 -11.58659 -11.55063 -11.49320 -11.36686 -10.89671 -10.61892 -10.03791 -9.72824 -9.46470 -9.33445 -8.73178 -6.37261 0.34496 0.78343 1.15171 1.32129 1.37435 1.49639 1.58759 2.09500 2.15535 2.46984 2.72374 3.36535 3.56184 3.68198 3.75726 3.89790 4.00220 4.15124 4.17419 4.24765 4.30032 4.34503 4.47602 4.51283 4.56634 4.62998 4.66822 4.72351 4.78710 4.86353 4.94710 5.01045 5.02835 5.04845 5.09360 5.09839 5.18593 5.19932 5.20739 5.32929 5.38903 5.44439 5.50439 5.53293 5.63879 5.91556 6.09218 6.13868 6.24295 6.31106 6.32330 6.66122 6.68428 6.88899 6.99441 7.01710 8.16078 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.002207 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.199228 B =12681.666962 C =13314.538503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C 0.119 3.881 4 H 0.085 0.915 5 C -0.119 4.119 6 C -0.118 4.118 7 C 0.124 3.876 8 H 0.083 0.917 9 C -0.166 4.166 10 N -0.592 5.592 11 C 0.523 3.477 12 O -0.544 6.544 13 C 0.501 3.499 14 O -0.529 6.529 15 N -0.693 5.693 16 C 0.198 3.802 17 C -0.246 4.246 18 C -0.079 4.079 19 C -0.224 4.224 20 C 0.080 3.920 21 C -0.485 4.485 22 H 0.078 0.922 23 C 0.037 3.963 24 N -0.799 5.799 25 Si 0.983 3.017 26 H -0.258 1.258 27 H -0.263 1.263 28 H -0.260 1.260 29 C -0.256 4.256 30 C -0.062 4.062 31 H 0.023 0.977 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.408 0.592 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.101 0.899 47 H 0.125 0.875 48 H 0.293 0.707 49 H 0.097 0.903 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.775 -3.753 7.695 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C 0.017 3.983 4 H 0.103 0.897 5 C -0.157 4.157 6 C -0.156 4.156 7 C 0.023 3.977 8 H 0.101 0.899 9 C -0.223 4.223 10 N -0.327 5.327 11 C 0.307 3.693 12 O -0.422 6.422 13 C 0.283 3.717 14 O -0.408 6.408 15 N -0.344 5.344 16 C 0.076 3.924 17 C -0.248 4.248 18 C -0.098 4.098 19 C -0.243 4.243 20 C 0.077 3.923 21 C -0.512 4.512 22 H 0.097 0.903 23 C -0.181 4.181 24 N -0.423 5.423 25 Si 0.802 3.198 26 H -0.183 1.183 27 H -0.187 1.187 28 H -0.183 1.183 29 C -0.276 4.276 30 C -0.081 4.081 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.244 0.756 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.143 0.857 48 H 0.104 0.896 49 H 0.115 0.885 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 22.615 -3.408 7.953 24.214 hybrid contribution -1.157 0.193 -1.302 1.753 sum 21.458 -3.215 6.651 22.694 Atomic orbital electron populations 1.22612 0.97116 1.01260 1.00347 1.21928 0.95243 0.95785 1.03423 1.22179 0.98945 0.94052 0.83128 0.89685 1.22759 0.90950 1.00378 1.01623 1.22881 1.00019 0.99764 0.92950 1.22276 0.81118 0.97283 0.97069 0.89862 1.22085 1.03745 0.96111 1.00397 1.48516 1.04962 1.59459 1.19761 1.19952 0.84919 0.77727 0.86748 1.90716 1.87096 1.49764 1.14603 1.19964 0.85187 0.78541 0.87967 1.90670 1.87270 1.49421 1.13443 1.46332 1.04998 1.71465 1.11628 1.19864 0.79341 1.01478 0.91696 1.19148 1.02923 0.93139 1.09560 1.20791 0.95636 0.96430 0.96912 1.21878 0.99513 0.99397 1.03547 1.18040 0.92033 0.92180 0.90066 1.19974 1.12713 0.94621 1.23941 0.90341 1.26918 0.95563 0.94443 1.01189 1.69826 1.33146 1.04106 1.35228 0.85186 0.78564 0.79056 0.76953 1.18273 1.18747 1.18339 1.21044 1.03282 0.96545 1.06712 1.20638 0.94930 0.96611 0.95882 0.95799 0.93121 0.90596 0.92143 0.87934 0.88815 0.87841 0.90299 0.86814 0.88697 0.93406 0.92955 0.75646 0.91015 0.91783 0.88085 0.85729 0.89590 0.88492 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 8.05 71.98 0.58 -3.22 16 2 C -0.13 -2.27 5.39 30.59 0.16 -2.10 16 3 C 0.12 2.18 2.69 45.34 0.12 2.30 16 4 H 0.09 1.86 6.48 -2.39 -0.02 1.85 16 5 C -0.12 -1.16 6.45 31.79 0.20 -0.95 16 6 C -0.12 -1.17 6.50 31.99 0.21 -0.96 16 7 C 0.12 2.15 3.69 45.45 0.17 2.32 16 8 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 9 C -0.17 -3.16 8.97 71.98 0.65 -2.51 16 10 N -0.59 -13.76 2.99 -765.88 -2.29 -16.05 16 11 C 0.52 15.95 6.40 87.27 0.56 16.50 16 12 O -0.54 -19.21 15.01 -3.24 -0.05 -19.26 16 13 C 0.50 16.02 4.86 87.27 0.42 16.44 16 14 O -0.53 -17.10 10.93 -3.24 -0.04 -17.13 16 15 N -0.69 -23.31 5.54 -468.14 -2.59 -25.90 16 16 C 0.20 6.94 5.79 85.63 0.50 7.43 16 17 C -0.25 -10.29 5.27 -19.67 -0.10 -10.40 16 18 C -0.08 -3.65 9.67 22.22 0.21 -3.44 16 19 C -0.22 -11.82 8.92 22.73 0.20 -11.62 16 20 C 0.08 4.29 5.71 -21.29 -0.12 4.17 16 21 C -0.48 -25.88 9.05 23.46 0.21 -25.67 16 22 H 0.08 4.04 7.97 -2.91 -0.02 4.01 16 23 C 0.04 1.80 5.16 85.26 0.44 2.24 16 24 N -0.80 -40.45 10.46 21.83 0.23 -40.22 16 25 Si 0.98 37.09 29.63 68.60 2.03 39.12 16 26 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 27 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 28 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 29 C -0.26 -12.54 9.80 22.73 0.22 -12.32 16 30 C -0.06 -2.68 9.67 22.22 0.21 -2.46 16 31 H 0.02 0.68 4.15 -2.39 -0.01 0.67 16 32 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 2.05 6.03 -2.38 -0.01 2.03 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.31 8.09 -2.39 -0.02 1.29 16 36 H 0.09 0.66 7.85 -2.39 -0.02 0.64 16 37 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.82 8.03 -2.39 -0.02 0.80 16 39 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.23 6.18 -2.39 -0.01 1.22 16 42 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 43 H 0.41 14.33 7.96 -92.71 -0.74 13.60 16 44 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 45 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 46 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 47 H 0.13 6.86 5.28 -2.91 -0.02 6.84 16 48 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 49 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 50 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -62.45 391.49 2.37 -60.08 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: 0.22 Total: 43.59 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 4.85 Total: -24.24 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -4.65 Total: -82.16 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.08 Total: -36.39 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -62.45 2.37 -60.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118164945.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.066 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds