Wall clock time and date at job start Sat Apr 11 2020 07:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 H 1.09004 * 109.87216 * 306.59738 * 3 2 1 5 5 C 1.54323 * 109.88309 * 67.76813 * 3 2 1 6 6 C 1.55151 * 102.94591 * 141.61241 * 5 3 2 7 7 C 1.55137 * 101.48435 * 324.33519 * 6 5 3 8 8 H 1.08999 * 110.34094 * 156.06160 * 7 6 5 9 9 C 1.53004 * 110.49300 * 278.45225 * 7 6 5 10 10 N 1.47023 * 109.88518 * 185.57816 * 3 2 1 11 11 C 1.34772 * 125.64945 * 61.60374 * 10 3 2 12 12 O 1.21349 * 119.99945 * 5.11832 * 11 10 3 13 13 C 1.49451 * 120.00136 * 185.11434 * 11 10 3 14 14 O 1.21349 * 119.99919 * 0.02562 * 13 11 10 15 15 N 1.34772 * 120.00136 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99903 * 180.02562 * 15 13 11 17 17 C 1.50703 * 109.47040 * 179.97438 * 16 15 13 18 18 C 1.38639 * 119.74726 * 89.99863 * 17 16 15 19 19 C 1.37616 * 120.25026 * 179.97438 * 18 17 16 20 20 C 1.40722 * 119.74399 * 0.02562 * 19 18 17 21 21 C 1.41398 * 120.24395 * 180.02562 * 20 19 18 22 22 H 1.07995 * 119.99773 * 150.71013 * 21 20 19 23 23 C 1.39936 * 119.99908 * 330.44062 * 21 20 19 24 24 N 1.30824 * 120.00617 * 350.48682 * 23 21 20 25 25 Si 1.86804 * 120.00089 * 170.49013 * 23 21 20 26 26 H 1.48504 * 109.47026 * 59.99794 * 25 23 21 27 27 H 1.48504 * 109.47211 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47173 * 300.00145 * 25 23 21 29 29 C 1.40711 * 119.50894 * 0.27452 * 20 19 18 30 30 C 1.37618 * 119.74594 * 359.46435 * 29 20 19 31 31 H 1.08997 * 109.47316 * 64.76354 * 1 2 3 32 32 H 1.09001 * 109.47484 * 184.76385 * 1 2 3 33 33 H 1.09002 * 109.47111 * 304.76762 * 1 2 3 34 34 H 1.09007 * 109.47389 * 240.00021 * 2 1 3 35 35 H 1.08998 * 109.47081 * 120.00238 * 2 1 3 36 36 H 1.09000 * 110.72298 * 259.98002 * 5 3 2 37 37 H 1.09006 * 110.71782 * 23.07232 * 5 3 2 38 38 H 1.09000 * 111.00699 * 82.56919 * 6 5 3 39 39 H 1.09002 * 111.00882 * 206.39125 * 6 5 3 40 40 H 1.09001 * 109.46561 * 175.35049 * 9 7 6 41 41 H 1.08994 * 109.47407 * 295.34988 * 9 7 6 42 42 H 1.08996 * 109.47383 * 55.35372 * 9 7 6 43 43 H 0.97000 * 120.00179 * 0.02562 * 15 13 11 44 44 H 1.08995 * 109.47126 * 60.00352 * 16 15 13 45 45 H 1.08996 * 109.47288 * 299.99707 * 16 15 13 46 46 H 1.08005 * 119.87724 * 359.97438 * 18 17 16 47 47 H 1.08001 * 120.13206 * 179.97438 * 19 18 17 48 48 H 0.96997 * 120.01116 * 180.02562 * 24 23 21 49 49 H 1.08000 * 120.12583 * 179.70396 * 29 20 19 50 50 H 1.08007 * 119.87662 * 180.22787 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9955 -0.8230 5 6 1.6973 2.1203 1.3434 6 6 2.9549 2.9832 1.6281 7 6 4.0839 2.0774 1.0698 8 1 4.9548 2.6770 0.8051 9 6 4.4651 1.0049 2.0923 10 7 3.5040 1.4552 -0.1344 11 6 4.2008 0.9727 -1.1822 12 8 3.6155 0.5594 -2.1616 13 6 5.6945 0.9467 -1.1381 14 8 6.2798 1.3596 -0.1586 15 7 6.3913 0.4637 -2.1858 16 6 7.8554 0.4377 -2.1422 17 6 8.3859 -0.1452 -3.4268 18 6 8.6620 0.6896 -4.4986 19 6 9.1472 0.1684 -5.6763 20 6 9.3624 -1.2176 -5.7901 21 6 9.8611 -1.7643 -6.9949 22 1 10.4562 -2.6652 -6.9735 23 6 9.5789 -1.1410 -8.2156 24 7 8.7068 -0.1672 -8.2668 25 14 10.4473 -1.6996 -9.7724 26 1 10.1435 -3.1317 -10.0220 27 1 9.9751 -0.8863 -10.9217 28 1 11.9131 -1.5255 -9.6111 29 6 9.0726 -2.0559 -4.6978 30 6 8.5933 -1.5122 -3.5280 31 1 -0.3634 0.4381 -0.9295 32 1 -0.3634 -1.0241 0.0853 33 1 -0.3633 0.5860 0.8442 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5139 0.8899 36 1 0.8127 2.7492 1.2434 37 1 1.5525 1.3750 2.1255 38 1 2.9084 3.9307 1.0913 39 1 3.0814 3.1485 2.6980 40 1 5.1988 0.3289 1.6532 41 1 4.8917 1.4802 2.9755 42 1 3.5764 0.4415 2.3764 43 1 5.9234 0.1333 -2.9686 44 1 8.1831 -0.1756 -1.3029 45 1 8.2334 1.4527 -2.0201 46 1 8.4956 1.7530 -4.4091 47 1 9.3612 0.8205 -6.5102 48 1 8.5108 0.2646 -9.1130 49 1 9.2295 -3.1216 -4.7758 50 1 8.3737 -2.1533 -2.6870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118164948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:45 Heat of formation + Delta-G solvation = -63.465266 kcal Electronic energy + Delta-G solvation = -29791.194212 eV Core-core repulsion = 25782.332761 eV Total energy + Delta-G solvation = -4008.861451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.95571 -39.13696 -37.82421 -37.59559 -34.90780 -34.06080 -33.42415 -31.86587 -30.41612 -29.99816 -29.39115 -27.38611 -26.40441 -24.96801 -23.64929 -22.89920 -21.57259 -21.09510 -20.61549 -20.18325 -19.42367 -17.68474 -17.38144 -16.96115 -16.00501 -15.68415 -15.45768 -15.20739 -14.88631 -14.59483 -14.24445 -14.20223 -13.90837 -13.78563 -13.45166 -13.39218 -13.17590 -12.92426 -12.57048 -12.53232 -12.48904 -12.24651 -12.06455 -11.99507 -11.73006 -11.71230 -11.44550 -11.27774 -11.15102 -11.05423 -11.00893 -10.86533 -10.74044 -10.58656 -10.45832 -9.76104 -9.48014 -9.40265 -9.23755 -8.93455 -8.78026 -7.58458 -7.41013 -6.79382 -4.48731 1.58332 2.26903 2.69350 2.96779 3.03088 3.05466 3.09742 3.36658 3.67465 3.87992 4.23526 4.27591 4.52612 4.54909 4.73198 4.81150 4.92062 4.95966 5.11653 5.15187 5.30273 5.38723 5.41305 5.51417 5.56690 5.60383 5.66828 5.70005 5.78352 5.80391 5.81747 5.85788 5.93150 6.06138 6.11759 6.17693 6.21924 6.24966 6.31243 6.61213 6.85284 6.99657 7.15177 7.16895 7.25917 7.47921 7.51067 7.71615 7.90456 7.95833 7.97914 8.19127 8.23194 8.54261 8.79766 8.85545 10.13886 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.002079 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.028019 B =13467.111839 C =14120.574200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.136 3.864 4 H 0.079 0.921 5 C -0.126 4.126 6 C -0.133 4.133 7 C 0.127 3.873 8 H 0.104 0.896 9 C -0.152 4.152 10 N -0.588 5.588 11 C 0.520 3.480 12 O -0.518 6.518 13 C 0.499 3.501 14 O -0.529 6.529 15 N -0.683 5.683 16 C 0.183 3.817 17 C -0.243 4.243 18 C -0.083 4.083 19 C -0.161 4.161 20 C 0.117 3.883 21 C -0.459 4.459 22 H 0.078 0.922 23 C 0.072 3.928 24 N -0.797 5.797 25 Si 0.913 3.087 26 H -0.265 1.265 27 H -0.278 1.278 28 H -0.264 1.264 29 C -0.224 4.224 30 C -0.071 4.071 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.413 0.587 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.122 0.878 48 H 0.282 0.718 49 H 0.094 0.906 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 5.218 16.984 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.164 4.164 6 C -0.171 4.171 7 C 0.024 3.976 8 H 0.122 0.878 9 C -0.210 4.210 10 N -0.323 5.323 11 C 0.304 3.696 12 O -0.393 6.393 13 C 0.279 3.721 14 O -0.407 6.407 15 N -0.335 5.335 16 C 0.062 3.938 17 C -0.245 4.245 18 C -0.102 4.102 19 C -0.180 4.180 20 C 0.114 3.886 21 C -0.489 4.489 22 H 0.096 0.904 23 C -0.145 4.145 24 N -0.422 5.422 25 Si 0.738 3.262 26 H -0.190 1.190 27 H -0.203 1.203 28 H -0.188 1.188 29 C -0.244 4.244 30 C -0.090 4.090 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.250 0.750 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.139 0.861 48 H 0.093 0.907 49 H 0.112 0.888 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.724 5.416 16.880 21.821 hybrid contribution 0.045 -0.445 -1.206 1.286 sum -12.679 4.971 15.675 20.764 Atomic orbital electron populations 1.21707 0.94949 1.01920 1.01895 1.21917 0.96346 0.96053 1.03206 1.21718 0.79751 0.96915 0.98279 0.90265 1.22729 0.98380 0.99202 0.96082 1.22928 0.94145 0.98126 1.01887 1.22162 0.96917 0.94071 0.84415 0.87765 1.22048 1.01415 0.99107 0.98469 1.48453 1.06943 1.58430 1.18434 1.20120 0.88585 0.78693 0.82251 1.90768 1.71172 1.46044 1.31324 1.20006 0.87693 0.80090 0.84289 1.90684 1.70928 1.46904 1.32164 1.46469 1.08613 1.59973 1.18442 1.20115 0.76682 1.00293 0.96699 1.18966 1.16022 0.94058 0.95482 1.20589 0.99107 0.97042 0.93435 1.21384 1.04652 0.95603 0.96381 1.17703 0.87575 0.91487 0.91803 1.19611 1.28987 1.09704 0.90575 0.90387 1.25930 0.93550 0.93830 1.01199 1.69766 1.25022 1.19051 1.28388 0.86280 0.80499 0.79641 0.79790 1.18980 1.20281 1.18826 1.21043 1.10061 0.97890 0.95368 1.20416 0.98624 0.93503 0.96480 0.92506 0.92466 0.92586 0.90559 0.91776 0.90026 0.90235 0.90519 0.89629 0.91493 0.91583 0.92973 0.75050 0.91790 0.91708 0.89276 0.86065 0.90711 0.88760 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.83 37.15 0.37 -0.75 16 2 C -0.14 -1.35 5.41 -26.74 -0.14 -1.49 16 3 C 0.14 1.35 2.86 -66.95 -0.19 1.16 16 4 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.13 -0.85 5.18 -24.90 -0.13 -0.98 16 6 C -0.13 -0.95 6.58 -24.46 -0.16 -1.11 16 7 C 0.13 1.31 2.66 -66.29 -0.18 1.13 16 8 H 0.10 1.25 6.47 -51.93 -0.34 0.91 16 9 C -0.15 -1.48 9.24 37.16 0.34 -1.14 16 10 N -0.59 -7.20 2.71 -155.96 -0.42 -7.62 16 11 C 0.52 7.99 7.63 -11.59 -0.09 7.90 16 12 O -0.52 -9.11 15.65 5.50 0.09 -9.03 16 13 C 0.50 8.08 7.85 -11.59 -0.09 7.98 16 14 O -0.53 -8.77 12.54 5.50 0.07 -8.70 16 15 N -0.68 -11.57 5.54 -61.91 -0.34 -11.91 16 16 C 0.18 3.21 5.79 -5.19 -0.03 3.18 16 17 C -0.24 -5.01 5.27 -104.33 -0.55 -5.56 16 18 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 19 C -0.16 -4.03 8.66 -38.87 -0.34 -4.37 16 20 C 0.12 3.02 5.55 -106.82 -0.59 2.43 16 21 C -0.46 -11.85 9.06 -37.74 -0.34 -12.20 16 22 H 0.08 1.93 7.86 -52.49 -0.41 1.51 16 23 C 0.07 1.78 5.27 -17.35 -0.09 1.69 16 24 N -0.80 -20.23 10.83 55.55 0.60 -19.62 16 25 Si 0.91 18.36 29.57 -169.99 -5.03 13.34 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 27 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 28 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 29 C -0.22 -5.30 9.80 -38.87 -0.38 -5.68 16 30 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.34 7.37 -51.93 -0.38 -0.04 16 34 H 0.08 0.97 6.87 -51.93 -0.36 0.61 16 35 H 0.06 0.61 8.01 -51.93 -0.42 0.19 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.48 7.32 -51.93 -0.38 0.10 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.47 8.05 -51.93 -0.42 0.05 16 40 H 0.07 0.82 6.95 -51.93 -0.36 0.46 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.45 7.37 -51.93 -0.38 0.07 16 43 H 0.41 7.26 7.94 -40.82 -0.32 6.94 16 44 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 45 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 46 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 47 H 0.12 3.16 6.23 -52.49 -0.33 2.83 16 48 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 49 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 50 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 402.05 15.07 6.06 6.06 Total: -1.00 -27.74 402.05 -10.22 -37.96 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -7.87 Total: 11.47 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -3.36 Total: -11.93 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: -0.16 Total: -39.16 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.15 Total: -17.73 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -27.74 -10.22 -37.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118164948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.510 kcal (2) G-P(sol) polarization free energy of solvation -27.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds