Wall clock time and date at job start Sat Apr 11 2020 07:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 H 1.09004 * 109.87216 * 306.59738 * 3 2 1 5 5 C 1.54323 * 109.88309 * 67.76813 * 3 2 1 6 6 C 1.55151 * 102.94591 * 141.61241 * 5 3 2 7 7 C 1.55137 * 101.48435 * 324.33519 * 6 5 3 8 8 H 1.08999 * 110.34094 * 156.06160 * 7 6 5 9 9 C 1.53004 * 110.49300 * 278.45225 * 7 6 5 10 10 N 1.47023 * 109.88518 * 185.57816 * 3 2 1 11 11 C 1.34772 * 125.64945 * 61.60374 * 10 3 2 12 12 O 1.21349 * 119.99945 * 5.11832 * 11 10 3 13 13 C 1.49451 * 120.00136 * 185.11434 * 11 10 3 14 14 O 1.21349 * 119.99919 * 0.02562 * 13 11 10 15 15 N 1.34772 * 120.00136 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99903 * 180.02562 * 15 13 11 17 17 C 1.50703 * 109.47040 * 179.97438 * 16 15 13 18 18 C 1.38639 * 119.74726 * 89.99863 * 17 16 15 19 19 C 1.37616 * 120.25026 * 179.97438 * 18 17 16 20 20 C 1.40722 * 119.74399 * 0.02562 * 19 18 17 21 21 C 1.41398 * 120.24395 * 180.02562 * 20 19 18 22 22 H 1.07995 * 119.99773 * 150.71013 * 21 20 19 23 23 C 1.39936 * 119.99908 * 330.44062 * 21 20 19 24 24 N 1.30824 * 120.00617 * 350.48682 * 23 21 20 25 25 Si 1.86804 * 120.00089 * 170.49013 * 23 21 20 26 26 H 1.48504 * 109.47026 * 59.99794 * 25 23 21 27 27 H 1.48504 * 109.47211 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47173 * 300.00145 * 25 23 21 29 29 C 1.40711 * 119.50894 * 0.27452 * 20 19 18 30 30 C 1.37618 * 119.74594 * 359.46435 * 29 20 19 31 31 H 1.08997 * 109.47316 * 64.76354 * 1 2 3 32 32 H 1.09001 * 109.47484 * 184.76385 * 1 2 3 33 33 H 1.09002 * 109.47111 * 304.76762 * 1 2 3 34 34 H 1.09007 * 109.47389 * 240.00021 * 2 1 3 35 35 H 1.08998 * 109.47081 * 120.00238 * 2 1 3 36 36 H 1.09000 * 110.72298 * 259.98002 * 5 3 2 37 37 H 1.09006 * 110.71782 * 23.07232 * 5 3 2 38 38 H 1.09000 * 111.00699 * 82.56919 * 6 5 3 39 39 H 1.09002 * 111.00882 * 206.39125 * 6 5 3 40 40 H 1.09001 * 109.46561 * 175.35049 * 9 7 6 41 41 H 1.08994 * 109.47407 * 295.34988 * 9 7 6 42 42 H 1.08996 * 109.47383 * 55.35372 * 9 7 6 43 43 H 0.97000 * 120.00179 * 0.02562 * 15 13 11 44 44 H 1.08995 * 109.47126 * 60.00352 * 16 15 13 45 45 H 1.08996 * 109.47288 * 299.99707 * 16 15 13 46 46 H 1.08005 * 119.87724 * 359.97438 * 18 17 16 47 47 H 1.08001 * 120.13206 * 179.97438 * 19 18 17 48 48 H 0.96997 * 120.01116 * 180.02562 * 24 23 21 49 49 H 1.08000 * 120.12583 * 179.70396 * 29 20 19 50 50 H 1.08007 * 119.87662 * 180.22787 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9955 -0.8230 5 6 1.6973 2.1203 1.3434 6 6 2.9549 2.9832 1.6281 7 6 4.0839 2.0774 1.0698 8 1 4.9548 2.6770 0.8051 9 6 4.4651 1.0049 2.0923 10 7 3.5040 1.4552 -0.1344 11 6 4.2008 0.9727 -1.1822 12 8 3.6155 0.5594 -2.1616 13 6 5.6945 0.9467 -1.1381 14 8 6.2798 1.3596 -0.1586 15 7 6.3913 0.4637 -2.1858 16 6 7.8554 0.4377 -2.1422 17 6 8.3859 -0.1452 -3.4268 18 6 8.6620 0.6896 -4.4986 19 6 9.1472 0.1684 -5.6763 20 6 9.3624 -1.2176 -5.7901 21 6 9.8611 -1.7643 -6.9949 22 1 10.4562 -2.6652 -6.9735 23 6 9.5789 -1.1410 -8.2156 24 7 8.7068 -0.1672 -8.2668 25 14 10.4473 -1.6996 -9.7724 26 1 10.1435 -3.1317 -10.0220 27 1 9.9751 -0.8863 -10.9217 28 1 11.9131 -1.5255 -9.6111 29 6 9.0726 -2.0559 -4.6978 30 6 8.5933 -1.5122 -3.5280 31 1 -0.3634 0.4381 -0.9295 32 1 -0.3634 -1.0241 0.0853 33 1 -0.3633 0.5860 0.8442 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5139 0.8899 36 1 0.8127 2.7492 1.2434 37 1 1.5525 1.3750 2.1255 38 1 2.9084 3.9307 1.0913 39 1 3.0814 3.1485 2.6980 40 1 5.1988 0.3289 1.6532 41 1 4.8917 1.4802 2.9755 42 1 3.5764 0.4415 2.3764 43 1 5.9234 0.1333 -2.9686 44 1 8.1831 -0.1756 -1.3029 45 1 8.2334 1.4527 -2.0201 46 1 8.4956 1.7530 -4.4091 47 1 9.3612 0.8205 -6.5102 48 1 8.5108 0.2646 -9.1130 49 1 9.2295 -3.1216 -4.7758 50 1 8.3737 -2.1533 -2.6870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118164948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:43 Heat of formation + Delta-G solvation = -77.820817 kcal Electronic energy + Delta-G solvation = -29791.816715 eV Core-core repulsion = 25782.332761 eV Total energy + Delta-G solvation = -4009.483954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.04601 -40.32808 -39.42034 -38.86458 -36.44401 -35.17926 -34.77997 -32.77259 -32.14520 -31.21814 -30.71314 -28.97322 -27.30504 -26.24839 -24.97161 -23.73891 -22.93840 -22.61388 -21.86087 -21.46155 -20.56939 -19.24884 -18.77394 -18.13309 -17.27101 -17.04890 -16.89365 -16.37820 -16.06356 -15.72167 -15.68784 -15.43167 -15.19556 -14.96920 -14.83621 -14.51115 -14.21718 -13.87187 -13.85800 -13.77047 -13.65376 -13.45151 -13.25274 -13.19070 -12.97276 -12.81669 -12.75306 -12.53587 -12.46170 -12.36124 -12.12924 -12.10769 -11.75273 -11.54171 -11.48298 -11.35050 -11.31155 -11.11975 -10.58887 -10.23095 -9.85779 -9.42269 -9.25920 -8.62032 -6.41806 0.33156 0.74676 1.10181 1.31333 1.37851 1.49323 1.53674 2.11348 2.19648 2.47121 2.77710 3.31094 3.53728 3.67728 3.70265 3.85929 4.08418 4.11985 4.19066 4.24954 4.26365 4.43981 4.46670 4.47227 4.56384 4.61832 4.68973 4.71266 4.73960 4.95035 4.97930 5.01625 5.03452 5.09570 5.13311 5.13693 5.16309 5.19971 5.25929 5.31849 5.32579 5.40584 5.44766 5.45293 5.66705 5.84522 6.06955 6.07532 6.14718 6.27712 6.34144 6.63657 6.66241 6.90577 6.93003 6.97663 8.33305 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.002079 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.028019 B =13467.111839 C =14120.574200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.127 3.873 4 H 0.070 0.930 5 C -0.115 4.115 6 C -0.123 4.123 7 C 0.117 3.883 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.581 5.581 11 C 0.515 3.485 12 O -0.550 6.550 13 C 0.501 3.499 14 O -0.531 6.531 15 N -0.688 5.688 16 C 0.192 3.808 17 C -0.226 4.226 18 C -0.085 4.085 19 C -0.184 4.184 20 C 0.085 3.915 21 C -0.497 4.497 22 H 0.077 0.923 23 C 0.031 3.969 24 N -0.831 5.831 25 Si 0.985 3.015 26 H -0.260 1.260 27 H -0.269 1.269 28 H -0.259 1.259 29 C -0.238 4.238 30 C -0.071 4.071 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.410 0.590 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.287 0.713 49 H 0.100 0.900 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.246 5.916 19.551 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.025 3.975 4 H 0.088 0.912 5 C -0.153 4.153 6 C -0.161 4.161 7 C 0.015 3.985 8 H 0.103 0.897 9 C -0.204 4.204 10 N -0.314 5.314 11 C 0.298 3.702 12 O -0.429 6.429 13 C 0.282 3.718 14 O -0.409 6.409 15 N -0.339 5.339 16 C 0.071 3.929 17 C -0.227 4.227 18 C -0.104 4.104 19 C -0.204 4.204 20 C 0.082 3.918 21 C -0.527 4.527 22 H 0.095 0.905 23 C -0.183 4.183 24 N -0.457 5.457 25 Si 0.806 3.194 26 H -0.185 1.185 27 H -0.193 1.193 28 H -0.183 1.183 29 C -0.258 4.258 30 C -0.089 4.089 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.246 0.754 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.098 0.902 49 H 0.118 0.882 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.195 6.134 19.512 24.897 hybrid contribution 0.427 -0.603 -1.784 1.931 sum -13.768 5.531 17.728 23.118 Atomic orbital electron populations 1.21680 0.93000 1.02610 1.02639 1.21867 0.98005 0.95641 1.01647 1.22009 0.78034 0.97282 1.00202 0.91168 1.22764 0.98995 0.99460 0.94072 1.22930 0.92499 0.97359 1.03281 1.22381 0.97706 0.94605 0.83834 0.89668 1.21993 1.01259 0.98548 0.98640 1.48632 1.08237 1.56560 1.17934 1.19946 0.88162 0.79214 0.82869 1.90752 1.71432 1.47987 1.32708 1.20153 0.88263 0.79569 0.83817 1.90683 1.71219 1.46859 1.32137 1.46309 1.08251 1.60597 1.18740 1.19992 0.77054 1.00694 0.95163 1.19236 1.13778 0.93734 0.96002 1.20810 0.98329 0.98263 0.92996 1.21336 1.06546 0.95431 0.97052 1.18048 0.88696 0.92203 0.92832 1.19861 1.30540 1.10595 0.91674 0.90489 1.26776 0.93797 0.93674 1.04091 1.69838 1.26212 1.20222 1.29443 0.85200 0.79244 0.79269 0.75681 1.18479 1.19338 1.18340 1.21242 1.10497 0.98202 0.95823 1.20723 0.97431 0.94240 0.96544 0.93081 0.92144 0.90187 0.94175 0.91249 0.87659 0.88739 0.90253 0.87007 0.94457 0.89686 0.91638 0.75444 0.90555 0.90995 0.87544 0.87912 0.90222 0.88181 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.83 71.98 0.71 -1.17 16 2 C -0.13 -2.48 5.41 30.59 0.17 -2.32 16 3 C 0.13 2.30 2.86 45.34 0.13 2.43 16 4 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 5 C -0.12 -1.12 5.18 31.78 0.16 -0.95 16 6 C -0.12 -1.31 6.58 32.06 0.21 -1.10 16 7 C 0.12 2.18 2.66 45.55 0.12 2.31 16 8 H 0.09 1.94 6.47 -2.39 -0.02 1.92 16 9 C -0.15 -2.53 9.24 71.98 0.66 -1.86 16 10 N -0.58 -13.72 2.71 -765.71 -2.08 -15.80 16 11 C 0.52 15.93 7.63 87.27 0.67 16.59 16 12 O -0.55 -19.94 15.65 -3.24 -0.05 -20.00 16 13 C 0.50 16.07 7.85 87.27 0.69 16.76 16 14 O -0.53 -17.19 12.54 -3.24 -0.04 -17.23 16 15 N -0.69 -22.97 5.54 -468.15 -2.59 -25.57 16 16 C 0.19 6.49 5.79 85.63 0.50 6.99 16 17 C -0.23 -9.15 5.27 -19.67 -0.10 -9.25 16 18 C -0.09 -3.83 9.67 22.22 0.21 -3.61 16 19 C -0.18 -9.59 8.66 22.73 0.20 -9.39 16 20 C 0.08 4.54 5.55 -21.29 -0.12 4.42 16 21 C -0.50 -26.71 9.06 23.46 0.21 -26.50 16 22 H 0.08 3.97 7.86 -2.91 -0.02 3.94 16 23 C 0.03 1.55 5.27 85.25 0.45 2.00 16 24 N -0.83 -43.77 10.83 21.82 0.24 -43.53 16 25 Si 0.99 38.39 29.57 68.60 2.03 40.42 16 26 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 27 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 28 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 29 C -0.24 -11.47 9.80 22.73 0.22 -11.24 16 30 C -0.07 -2.97 9.67 22.22 0.21 -2.76 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.68 7.37 -2.39 -0.02 0.67 16 34 H 0.04 1.04 6.87 -2.38 -0.02 1.03 16 35 H 0.07 1.19 8.01 -2.39 -0.02 1.17 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 0.70 7.32 -2.38 -0.02 0.68 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 0.69 8.05 -2.39 -0.02 0.67 16 40 H 0.04 0.87 6.95 -2.39 -0.02 0.85 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 0.95 7.37 -2.39 -0.02 0.93 16 43 H 0.41 14.50 7.94 -92.71 -0.74 13.76 16 44 H 0.08 2.43 8.08 -2.39 -0.02 2.41 16 45 H 0.07 2.36 8.08 -2.39 -0.02 2.34 16 46 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 47 H 0.10 5.65 6.23 -2.91 -0.02 5.64 16 48 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 49 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 50 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -63.40 402.05 3.01 -60.39 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: 0.21 Total: 39.99 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.30 Total: -18.67 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -4.44 Total: -84.90 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.09 Total: -37.23 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -63.40 3.01 -60.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118164948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.431 kcal (2) G-P(sol) polarization free energy of solvation -63.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds