Wall clock time and date at job start Sat Apr 11 2020 07:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32869 * 1 3 3 C 1.47118 * 120.00108 * 2 1 4 4 C 1.50694 * 120.00324 * 0.02562 * 3 2 1 5 5 C 1.32874 * 119.99734 * 179.97438 * 3 2 1 6 6 C 1.50702 * 120.00125 * 186.26821 * 5 3 2 7 7 C 1.50693 * 109.47007 * 125.60438 * 6 5 3 8 8 O 1.21284 * 120.00405 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99964 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00052 * 180.02562 * 9 7 6 11 11 C 1.52989 * 109.47042 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47422 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00561 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47215 * 180.02562 * 13 12 11 15 15 C 1.38307 * 119.92882 * 269.72788 * 14 13 12 16 16 C 1.38098 * 120.06417 * 179.72505 * 15 14 13 17 17 C 1.38873 * 119.93441 * 0.57351 * 16 15 14 18 18 O 1.35754 * 120.07430 * 179.68121 * 17 16 15 19 19 C 1.34829 * 117.00155 * 173.33541 * 18 17 16 20 20 H 1.08000 * 119.99949 * 5.30272 * 19 18 17 21 21 C 1.38649 * 120.00001 * 185.29280 * 19 18 17 22 22 N 1.31560 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00090 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47337 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47186 * 120.00340 * 23 21 19 26 26 H 1.48502 * 109.47294 * 240.00473 * 23 21 19 27 27 C 1.38887 * 119.86273 * 359.70122 * 17 16 15 28 28 C 1.38099 * 119.92677 * 0.02562 * 27 17 16 29 29 H 1.07998 * 120.00313 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99391 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99926 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47240 * 213.44915 * 4 3 2 33 33 H 1.09002 * 109.46866 * 333.44404 * 4 3 2 34 34 H 1.08993 * 109.47304 * 93.44467 * 4 3 2 35 35 H 1.07996 * 120.00132 * 5.99776 * 5 3 2 36 36 H 1.08997 * 109.47351 * 245.61470 * 6 5 3 37 37 H 1.09005 * 109.46502 * 5.61149 * 6 5 3 38 38 H 0.97000 * 119.99529 * 0.02562 * 9 7 6 39 39 H 1.09001 * 109.47005 * 299.99985 * 10 9 7 40 40 H 1.09003 * 109.46810 * 59.99996 * 10 9 7 41 41 H 1.09002 * 109.47540 * 300.00377 * 11 10 9 42 42 H 1.09003 * 109.47258 * 60.00347 * 11 10 9 43 43 H 1.00900 * 111.00096 * 303.96034 * 12 11 10 44 44 H 1.08997 * 109.47262 * 300.00533 * 13 12 11 45 45 H 1.09008 * 109.46783 * 60.00512 * 13 12 11 46 46 H 1.07997 * 119.96507 * 359.97438 * 15 14 13 47 47 H 1.08000 * 120.03150 * 180.27570 * 16 15 14 48 48 H 0.97005 * 119.99722 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.04005 * 179.97438 * 27 17 16 50 50 H 1.07999 * 119.96916 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1466 2.5713 0.1430 7 6 5.1136 2.4666 1.2940 8 8 5.1844 1.4396 1.9352 9 7 5.9000 3.5144 1.6109 10 6 6.8405 3.4125 2.7295 11 6 7.6054 4.7295 2.8743 12 7 8.5481 4.6276 3.9963 13 6 9.3025 5.8767 4.1653 14 6 10.2574 5.7342 5.3224 15 6 9.8526 6.0828 6.5981 16 6 10.7235 5.9480 7.6614 17 6 12.0108 5.4730 7.4469 18 8 12.8713 5.3455 8.4890 19 6 14.0548 4.7509 8.2364 20 1 14.3172 4.4786 7.2248 21 6 14.9348 4.4892 9.2753 22 7 14.6150 4.8207 10.5077 23 14 16.5747 3.6661 8.9253 24 1 16.6931 3.3974 7.4696 25 1 17.6794 4.5610 9.3544 26 1 16.6558 2.3859 9.6736 27 6 12.4161 5.1291 6.1637 28 6 11.5387 5.2609 5.1055 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8687 -0.9353 -0.0004 32 1 1.8717 3.3227 -0.5659 33 1 0.3330 2.4343 -0.4585 34 1 1.1832 2.9245 1.0264 35 1 3.9330 0.3438 -0.0968 36 1 4.6961 2.7751 -0.7760 37 1 3.4424 3.3814 0.3326 38 1 5.8431 4.3359 1.0983 39 1 6.2912 3.2080 3.6486 40 1 7.5449 2.6026 2.5393 41 1 8.1547 4.9336 1.9552 42 1 6.9013 5.5396 3.0643 43 1 8.0702 4.3753 4.8484 44 1 9.8639 6.0881 3.2553 45 1 8.6104 6.6951 4.3637 46 1 8.8532 6.4571 6.7635 47 1 10.4054 6.2163 8.6580 48 1 15.2306 4.6373 11.2346 49 1 13.4166 4.7598 5.9936 50 1 11.8533 4.9940 4.1074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132516108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:02 Heat of formation + Delta-G solvation = -11.143508 kcal Electronic energy + Delta-G solvation = -27119.190833 eV Core-core repulsion = 23112.598224 eV Total energy + Delta-G solvation = -4006.592609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.08852 -39.09427 -37.52704 -37.18167 -36.11643 -34.44020 -32.94106 -32.31212 -30.67946 -30.16808 -29.33089 -27.95268 -26.72869 -25.48694 -23.91668 -22.47063 -21.96646 -21.72557 -20.42470 -20.42122 -18.29106 -17.99128 -17.58126 -16.96465 -16.64490 -16.37016 -16.05777 -15.49580 -14.81322 -14.73875 -14.58245 -14.46397 -14.28041 -14.01888 -13.88691 -13.60643 -13.50454 -13.39298 -13.13633 -13.02223 -12.77424 -12.68973 -12.17262 -12.01956 -11.92363 -11.81943 -11.69306 -11.48287 -11.29306 -11.26089 -10.91871 -10.81462 -10.70116 -10.56457 -10.42129 -10.19176 -9.39825 -9.33336 -8.84633 -8.62564 -8.50188 -8.17959 -7.20251 -6.45571 -4.04338 0.92471 2.20562 2.25418 2.33349 2.55214 2.92346 3.12527 3.14493 3.19866 3.96677 4.20158 4.22335 4.40159 4.46497 4.64594 4.67135 4.79674 4.82458 4.86323 4.89201 4.98619 5.08770 5.17229 5.18557 5.25538 5.26620 5.32369 5.38138 5.41077 5.55303 5.65174 5.69812 5.74075 5.79989 5.86463 5.95157 6.06313 6.08861 6.20530 6.27030 6.41770 6.52826 6.68561 6.87134 6.92037 7.07394 7.13999 7.18122 7.33374 7.40504 7.44672 7.81865 7.90616 7.99730 9.00344 9.70031 10.72480 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.001262 C = 0.001236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.967717 B =22177.268624 C =22644.133708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.116 4.116 3 C -0.108 4.108 4 C -0.124 4.124 5 C -0.121 4.121 6 C -0.117 4.117 7 C 0.515 3.485 8 O -0.533 6.533 9 N -0.732 5.732 10 C 0.119 3.881 11 C 0.049 3.951 12 N -0.682 5.682 13 C 0.121 3.879 14 C -0.189 4.189 15 C -0.068 4.068 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.235 4.235 28 C -0.048 4.048 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.400 0.600 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.032 0.968 43 H 0.345 0.655 44 H 0.071 0.929 45 H 0.029 0.971 46 H 0.107 0.893 47 H 0.116 0.884 48 H 0.269 0.731 49 H 0.127 0.873 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.716 -1.116 -23.272 33.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.134 4.134 3 C -0.108 4.108 4 C -0.181 4.181 5 C -0.139 4.139 6 C -0.156 4.156 7 C 0.301 3.699 8 O -0.409 6.409 9 N -0.385 5.385 10 C -0.005 4.005 11 C -0.081 4.081 12 N -0.314 5.314 13 C -0.007 4.007 14 C -0.190 4.190 15 C -0.087 4.087 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.254 4.254 28 C -0.066 4.066 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.233 0.767 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.164 0.836 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.125 0.875 47 H 0.134 0.866 48 H 0.079 0.921 49 H 0.144 0.856 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.063 -2.108 -22.693 32.424 hybrid contribution 0.230 0.493 0.012 0.544 sum -22.834 -1.615 -22.681 32.224 Atomic orbital electron populations 1.24422 0.95703 1.02081 1.00248 1.21866 0.95328 0.96097 1.00139 1.20565 0.93891 0.94426 1.01942 1.20909 1.00331 0.94508 1.02319 1.22764 0.93886 0.97755 0.99538 1.20796 0.98194 0.98691 0.97939 1.20524 0.80865 0.83235 0.85250 1.90745 1.68010 1.29390 1.52708 1.45940 1.40826 1.16786 1.34905 1.21297 0.91426 0.98525 0.89245 1.22070 0.94219 0.95277 0.96563 1.60439 1.28414 1.34556 1.08023 1.20606 0.94195 0.88818 0.97041 1.19079 0.95513 1.10707 0.93705 1.20474 0.97773 0.98568 0.91860 1.20171 0.92354 1.09643 0.99123 1.19407 0.89929 0.92513 0.87904 1.83974 1.25384 1.67739 1.31046 1.21389 0.91491 1.38425 0.95457 0.88970 1.25292 0.99620 0.97190 0.94394 1.70052 1.36460 1.44064 0.99159 0.85647 0.80161 0.78756 0.78872 1.19058 1.20153 1.20113 1.21175 1.01419 1.10249 0.92591 1.20568 0.92637 0.95838 0.97597 0.88097 0.88062 0.86728 0.91334 0.91372 0.91337 0.86268 0.87794 0.87938 0.76658 0.91490 0.90309 0.90538 0.94983 0.83616 0.91074 0.95286 0.87494 0.86601 0.92066 0.85575 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.09 14.11 28.88 0.41 -0.68 16 2 C -0.12 -0.82 9.83 -37.83 -0.37 -1.19 16 3 C -0.11 -0.77 5.98 -102.87 -0.62 -1.38 16 4 C -0.12 -0.62 8.54 36.00 0.31 -0.31 16 5 C -0.12 -0.92 8.45 -36.16 -0.31 -1.22 16 6 C -0.12 -0.66 5.77 -29.04 -0.17 -0.83 16 7 C 0.52 4.73 7.82 -10.99 -0.09 4.64 16 8 O -0.53 -7.46 16.03 5.55 0.09 -7.37 16 9 N -0.73 -5.23 5.56 -60.30 -0.33 -5.56 16 10 C 0.12 1.09 5.93 -4.05 -0.02 1.06 16 11 C 0.05 0.41 5.80 -3.83 -0.02 0.39 16 12 N -0.68 -7.85 6.49 -115.06 -0.75 -8.59 16 13 C 0.12 1.51 5.81 -4.98 -0.03 1.48 16 14 C -0.19 -3.10 5.40 -104.57 -0.56 -3.66 16 15 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 16 C -0.19 -4.05 9.99 -39.40 -0.39 -4.44 16 17 C 0.16 3.78 6.64 -39.11 -0.26 3.52 16 18 O -0.18 -5.10 9.76 0.04 0.00 -5.10 16 19 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 20 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 23 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.24 -5.10 9.16 -39.39 -0.36 -5.46 16 28 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 29 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 30 H 0.10 0.50 6.09 -52.49 -0.32 0.18 16 31 H 0.11 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.07 0.24 6.63 -51.93 -0.34 -0.10 16 33 H 0.07 0.29 6.26 -51.93 -0.33 -0.03 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.12 1.01 8.05 -52.49 -0.42 0.58 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.40 5.77 -51.93 -0.30 0.10 16 38 H 0.40 1.56 8.47 -40.82 -0.35 1.21 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.35 4.02 8.72 -39.29 -0.34 3.67 16 44 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 45 H 0.03 0.33 8.08 -51.92 -0.42 -0.09 16 46 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 47 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 48 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.13 2.76 5.65 -52.49 -0.30 2.46 16 50 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 420.48 15.07 6.34 6.34 Total: -1.00 -33.82 420.48 -9.57 -43.39 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.60 Total: 6.50 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -3.06 Total: -20.60 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.32 Total: -38.73 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.82 -9.57 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132516108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.247 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds