Wall clock time and date at job start Sat Apr 11 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35733 * 117.00187 * 2 1 4 4 C 1.39021 * 119.88763 * 179.97438 * 3 2 1 5 5 C 1.37664 * 120.11336 * 180.02562 * 4 3 2 6 6 C 1.39972 * 119.88601 * 0.02562 * 5 4 3 7 7 C 1.47001 * 120.11395 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.99986 * 294.99612 * 7 6 5 9 9 C 1.34977 * 120.00151 * 114.99940 * 7 6 5 10 10 C 1.46263 * 119.99865 * 171.97406 * 9 7 6 11 11 O 1.21718 * 119.99952 * 353.89227 * 10 9 7 12 12 N 1.34781 * 119.99621 * 173.89062 * 10 9 7 13 13 C 1.47079 * 120.88239 * 354.77353 * 12 10 9 14 14 C 1.53689 * 108.27787 * 128.75340 * 13 12 10 15 15 N 1.46900 * 109.25593 * 54.08018 * 14 13 12 16 16 C 1.46904 * 110.99905 * 172.60669 * 15 14 13 17 17 C 1.50700 * 109.47036 * 59.39354 * 16 15 14 18 18 H 1.08004 * 119.99991 * 5.05219 * 17 16 15 19 19 C 1.37874 * 120.00221 * 185.04308 * 17 16 15 20 20 N 1.31519 * 119.99779 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00395 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47035 * 60.00359 * 21 19 17 23 23 H 1.48501 * 109.47359 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47339 * 300.00339 * 21 19 17 25 25 C 1.46899 * 111.26931 * 296.75207 * 15 14 13 26 26 C 1.47081 * 120.87650 * 175.04432 * 12 10 9 27 27 C 1.39976 * 119.77474 * 0.25185 * 6 5 4 28 28 C 1.37664 * 119.88046 * 359.48905 * 27 6 5 29 29 H 1.09005 * 109.46628 * 59.99939 * 1 2 3 30 30 H 1.09000 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47280 * 299.99672 * 1 2 3 32 32 H 1.07996 * 119.94198 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.05765 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47571 * 263.67808 * 8 7 6 35 35 H 1.08994 * 109.47477 * 143.67426 * 8 7 6 36 36 H 1.09006 * 109.47219 * 23.67912 * 8 7 6 37 37 H 1.08000 * 120.00359 * 351.97092 * 9 7 6 38 38 H 1.09006 * 109.61960 * 248.52036 * 13 12 10 39 39 H 1.08999 * 109.62725 * 9.09848 * 13 12 10 40 40 H 1.09000 * 109.64850 * 294.07698 * 14 13 12 41 41 H 1.09005 * 109.42285 * 173.94124 * 14 13 12 42 42 H 1.09004 * 109.47179 * 179.39292 * 16 15 14 43 43 H 1.08994 * 109.47292 * 299.39689 * 16 15 14 44 44 H 0.97000 * 119.99970 * 179.97438 * 20 19 17 45 45 H 1.08992 * 109.49612 * 303.15025 * 25 15 14 46 46 H 1.09002 * 109.49399 * 183.06480 * 25 15 14 47 47 H 1.08996 * 109.62968 * 350.89953 * 26 12 10 48 48 H 1.09004 * 109.62362 * 111.48067 * 26 12 10 49 49 H 1.07999 * 120.06078 * 179.75059 * 27 6 5 50 50 H 1.08003 * 119.94284 * 180.25249 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4337 1.2794 0.0005 5 6 4.0636 2.5035 0.0011 6 6 3.3036 3.6789 0.0016 7 6 3.9709 4.9887 0.0028 8 6 4.8039 5.4088 1.1862 9 6 3.8375 5.8150 -1.0561 10 6 4.3515 7.1826 -0.9858 11 8 4.7988 7.6115 0.0618 12 7 4.3298 7.9677 -2.0811 13 6 3.9006 7.4353 -3.3832 14 6 2.8283 8.3743 -3.9581 15 7 3.3527 9.7461 -3.9909 16 6 2.4286 10.6463 -4.6935 17 6 1.0942 10.6428 -3.9932 18 1 0.9708 10.0977 -3.0690 19 6 0.0309 11.3355 -4.5322 20 7 0.1811 11.9990 -5.6578 21 14 -1.6229 11.3318 -3.6638 22 1 -1.4697 11.9104 -2.3047 23 1 -2.5921 12.1452 -4.4411 24 1 -2.1216 9.9372 -3.5547 25 6 3.6406 10.2390 -2.6374 26 6 4.7405 9.3781 -2.0070 27 6 1.9059 3.6029 0.0070 28 6 1.2858 2.3738 0.0010 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0192 0.3719 0.0005 33 1 5.1422 2.5568 0.0019 34 1 4.2030 6.0283 1.8520 35 1 5.6662 5.9784 0.8397 36 1 5.1452 4.5236 1.7230 37 1 3.3514 5.4665 -1.9553 38 1 4.7540 7.3912 -4.0600 39 1 3.4826 6.4374 -3.2510 40 1 1.9372 8.3404 -3.3312 41 1 2.5740 8.0578 -4.9698 42 1 2.8361 11.6573 -4.6938 43 1 2.3005 10.3059 -5.7210 44 1 -0.5670 12.4861 -6.0371 45 1 2.7383 10.1792 -2.0289 46 1 3.9756 11.2749 -2.6911 47 1 4.8779 9.6652 -0.9646 48 1 5.6730 9.5171 -2.5541 49 1 1.3150 4.5069 0.0115 50 1 0.2074 2.3140 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171874650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:21 Heat of formation + Delta-G solvation = -34.488904 kcal Electronic energy + Delta-G solvation = -29615.530933 eV Core-core repulsion = 25607.925991 eV Total energy + Delta-G solvation = -4007.604942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36023 -40.98742 -39.27491 -38.58281 -36.07587 -35.37664 -34.32461 -32.22273 -32.17083 -30.51371 -30.01836 -28.63533 -28.15651 -27.01695 -24.82770 -24.38957 -23.82348 -23.39557 -22.15992 -20.71593 -19.43536 -19.07181 -18.50580 -18.26271 -17.14671 -16.86971 -16.76994 -16.65163 -16.49639 -16.07609 -15.92797 -15.52476 -15.44834 -15.13774 -14.84642 -14.69497 -14.55430 -14.34207 -14.23863 -13.82026 -13.71594 -13.51149 -13.34034 -12.99761 -12.94463 -12.88801 -12.71094 -12.66842 -12.47313 -12.40584 -12.16507 -11.96843 -11.89228 -11.84367 -11.79347 -11.59978 -10.63686 -10.58314 -10.31596 -10.04146 -9.64508 -9.07384 -9.01406 -8.18222 -6.37586 -0.06052 0.35882 0.55556 1.34344 1.35502 1.43630 2.04841 2.24618 2.34538 2.34843 2.70145 3.06737 3.30342 3.47215 3.80163 3.87191 3.91926 3.96059 4.08725 4.18132 4.23792 4.30499 4.36425 4.37446 4.38504 4.47556 4.54973 4.61213 4.65320 4.67690 4.74471 4.77305 4.82420 4.89372 4.99380 5.03401 5.05091 5.17507 5.18385 5.22697 5.28762 5.30591 5.35350 5.49600 5.54895 5.59031 5.71516 5.71770 5.99234 6.17331 6.39252 6.44894 6.49666 6.82364 7.18502 7.33854 8.83939 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.002556 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.755761 B =10952.923276 C =12774.491248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.123 3.877 4 C -0.158 4.158 5 C -0.058 4.058 6 C -0.114 4.114 7 C 0.028 3.972 8 C -0.113 4.113 9 C -0.229 4.229 10 C 0.542 3.458 11 O -0.577 6.577 12 N -0.609 5.609 13 C 0.119 3.881 14 C 0.050 3.950 15 N -0.537 5.537 16 C 0.200 3.800 17 C -0.557 4.557 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.923 5.923 21 Si 0.953 3.047 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.269 1.269 25 C 0.055 3.945 26 C 0.128 3.872 27 C -0.066 4.066 28 C -0.211 4.211 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.020 0.980 41 H 0.079 0.921 42 H 0.005 0.995 43 H 0.014 0.986 44 H 0.266 0.734 45 H 0.013 0.987 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.129 0.871 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 -24.504 11.362 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.078 3.922 4 C -0.177 4.177 5 C -0.075 4.075 6 C -0.114 4.114 7 C 0.026 3.974 8 C -0.169 4.169 9 C -0.250 4.250 10 C 0.336 3.664 11 O -0.460 6.460 12 N -0.341 5.341 13 C -0.003 4.003 14 C -0.079 4.079 15 N -0.260 5.260 16 C 0.074 3.926 17 C -0.596 4.596 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.562 5.562 21 Si 0.778 3.222 22 H -0.200 1.200 23 H -0.205 1.205 24 H -0.194 1.194 25 C -0.075 4.075 26 C 0.005 3.995 27 C -0.084 4.084 28 C -0.229 4.229 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.162 0.838 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.038 0.962 41 H 0.097 0.903 42 H 0.023 0.977 43 H 0.033 0.967 44 H 0.075 0.925 45 H 0.032 0.968 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.147 0.853 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.846 -24.357 11.480 27.554 hybrid contribution -2.275 0.964 0.370 2.498 sum 3.572 -23.393 11.850 26.465 Atomic orbital electron populations 1.23354 0.76490 1.05641 1.02239 1.86014 1.23394 1.26818 1.88265 1.19438 0.92854 0.84501 0.95446 1.20582 0.91392 0.99217 1.06462 1.21256 1.00720 0.89890 0.95670 1.18823 0.93303 0.92151 1.07151 1.21106 0.91068 0.91200 0.94058 1.21028 0.99312 1.01277 0.95261 1.22798 1.08306 0.92696 1.01155 1.18652 0.78125 0.87055 0.82587 1.90741 1.48817 1.76269 1.30162 1.48163 1.65199 1.11250 1.09463 1.22172 0.97868 0.97297 0.83013 1.22377 0.95471 0.89249 1.00807 1.62425 1.44961 1.02778 1.15869 1.19435 0.88627 0.91106 0.93458 1.21900 0.97535 1.31574 1.08624 0.93169 1.25751 1.02471 0.94763 0.95467 1.70040 1.33054 1.32932 1.20198 0.85696 0.79514 0.78447 0.78564 1.20030 1.20479 1.19388 1.22230 0.96702 0.98771 0.89765 1.21625 0.96994 0.79584 1.01335 1.21223 0.93225 0.97865 0.96122 1.21350 1.01150 0.91677 1.08733 0.91873 0.86230 0.91748 0.83464 0.83174 0.91240 0.90723 0.90455 0.83754 0.89332 0.87097 0.96168 0.90251 0.97671 0.96746 0.92512 0.96823 0.90662 0.89648 0.89869 0.85308 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.33 10.48 -90.56 -0.95 -6.28 16 3 C 0.12 2.13 6.70 22.65 0.15 2.28 16 4 C -0.16 -2.51 9.97 22.32 0.22 -2.28 16 5 C -0.06 -0.91 9.69 22.55 0.22 -0.69 16 6 C -0.11 -2.16 5.29 -20.14 -0.11 -2.27 16 7 C 0.03 0.60 5.47 -18.32 -0.10 0.50 16 8 C -0.11 -2.48 8.44 71.24 0.60 -1.88 16 9 C -0.23 -5.55 8.96 23.61 0.21 -5.34 16 10 C 0.54 16.57 7.48 86.33 0.65 17.21 16 11 O -0.58 -20.29 12.83 -4.41 -0.06 -20.35 16 12 N -0.61 -18.65 3.00 -822.23 -2.47 -21.12 16 13 C 0.12 3.23 6.54 86.50 0.57 3.79 16 14 C 0.05 1.82 5.17 86.54 0.45 2.26 16 15 N -0.54 -22.32 4.83 -898.88 -4.34 -26.66 16 16 C 0.20 10.31 5.11 85.56 0.44 10.74 16 17 C -0.56 -30.56 7.75 25.60 0.20 -30.37 16 18 H 0.05 2.76 5.88 -2.91 -0.02 2.74 16 19 C 0.02 0.86 5.46 84.65 0.46 1.32 16 20 N -0.92 -54.18 13.29 21.45 0.28 -53.89 16 21 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 C 0.05 2.12 5.24 86.38 0.45 2.58 16 26 C 0.13 4.11 6.58 86.35 0.57 4.68 16 27 C -0.07 -1.24 9.72 22.56 0.22 -1.02 16 28 C -0.21 -3.50 9.01 22.32 0.20 -3.30 16 29 H 0.06 0.50 7.65 -2.38 -0.02 0.48 16 30 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.48 7.65 -2.39 -0.02 0.46 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.07 1.71 8.00 -2.39 -0.02 1.69 16 35 H 0.07 1.91 6.30 -2.39 -0.02 1.89 16 36 H 0.08 1.31 7.99 -2.38 -0.02 1.29 16 37 H 0.14 3.00 5.91 -2.91 -0.02 2.99 16 38 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.11 2.38 5.37 -2.39 -0.01 2.37 16 40 H 0.02 0.83 6.79 -2.39 -0.02 0.81 16 41 H 0.08 2.83 8.11 -2.38 -0.02 2.81 16 42 H 0.01 0.29 8.07 -2.39 -0.02 0.27 16 43 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.01 0.60 6.92 -2.39 -0.02 0.58 16 46 H 0.07 2.91 8.05 -2.39 -0.02 2.89 16 47 H 0.09 2.80 7.09 -2.39 -0.02 2.78 16 48 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 50 H 0.15 1.84 6.27 -2.91 -0.02 1.83 16 Total: -1.00 -68.06 398.79 1.94 -66.11 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.94 Total: 16.99 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 6.51 Total: -0.51 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -6.52 Total: -101.67 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.01 Total: -26.63 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -68.06 1.94 -66.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171874650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.624 kcal (2) G-P(sol) polarization free energy of solvation -68.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds