Wall clock time and date at job start Sat Apr 11 2020 07:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50700 * 119.99869 * 2 1 4 4 C 1.32997 * 120.00291 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99730 * 359.97438 * 4 2 1 6 6 O 1.21616 * 120.00074 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99903 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99857 * 179.97438 * 7 5 4 9 9 C 1.50693 * 109.47429 * 271.70058 * 8 7 5 10 10 C 1.38237 * 120.00005 * 274.39998 * 9 8 7 11 11 C 1.38231 * 120.00000 * 179.76809 * 10 9 8 12 12 C 1.38237 * 120.00113 * 0.49775 * 11 10 9 13 13 C 1.38236 * 119.99533 * 359.75282 * 12 11 10 14 14 C 1.38226 * 120.00428 * 359.97438 * 13 12 11 15 15 C 1.46502 * 120.00019 * 359.97438 * 7 5 4 16 16 C 1.52999 * 109.47141 * 269.33144 * 15 7 5 17 17 O 1.42898 * 113.41099 * 46.59700 * 16 15 7 18 18 C 1.53493 * 114.20420 * 179.79645 * 16 15 7 19 19 N 1.47068 * 87.98892 * 87.51873 * 18 16 15 20 20 C 1.36928 * 136.06167 * 207.08313 * 19 18 16 21 21 H 1.08005 * 120.00096 * 10.51285 * 20 19 18 22 22 C 1.38817 * 120.00145 * 190.51063 * 20 19 18 23 23 N 1.31614 * 119.99798 * 16.00044 * 22 20 19 24 24 Si 1.86797 * 120.00019 * 196.26905 * 22 20 19 25 25 H 1.48502 * 109.47067 * 179.72647 * 24 22 20 26 26 H 1.48504 * 109.47370 * 299.72707 * 24 22 20 27 27 H 1.48497 * 109.47035 * 59.72661 * 24 22 20 28 28 C 1.47079 * 87.88190 * 27.34097 * 19 18 16 29 29 H 1.08993 * 109.46749 * 239.99608 * 1 2 3 30 30 H 1.08997 * 109.47072 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46525 * 119.99622 * 1 2 3 32 32 H 1.09003 * 109.47497 * 269.99762 * 3 2 1 33 33 H 1.08997 * 109.47276 * 30.00881 * 3 2 1 34 34 H 1.09010 * 109.46985 * 150.00069 * 3 2 1 35 35 H 1.07998 * 119.99901 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.46668 * 31.70536 * 8 7 5 37 37 H 1.09006 * 109.46616 * 151.70030 * 8 7 5 38 38 H 1.08002 * 119.99881 * 359.97438 * 10 9 8 39 39 H 1.08008 * 120.00148 * 180.22827 * 11 10 9 40 40 H 1.08001 * 119.99967 * 179.72412 * 12 11 10 41 41 H 1.08000 * 119.99647 * 179.97438 * 13 12 11 42 42 H 1.07996 * 120.00346 * 179.97438 * 14 13 12 43 43 H 1.09003 * 109.46640 * 149.33262 * 15 7 5 44 44 H 1.09000 * 109.46799 * 29.33492 * 15 7 5 45 45 H 0.96699 * 114.00231 * 306.74653 * 17 16 15 46 46 H 1.08999 * 113.47148 * 332.74276 * 18 16 15 47 47 H 1.09003 * 113.51871 * 202.30513 * 18 16 15 48 48 H 0.97006 * 120.00488 * 6.25270 * 23 22 20 49 49 H 1.08998 * 113.46435 * 87.43829 * 28 19 18 50 50 H 1.08995 * 113.46648 * 217.87694 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1721 -1.1518 -0.0005 5 6 1.4366 -2.4257 -0.0005 6 8 0.2204 -2.4257 0.0004 7 7 2.1104 -3.5929 -0.0005 8 6 1.3779 -4.8616 0.0001 9 6 1.0908 -5.2753 1.4204 10 6 2.0348 -5.9861 2.1375 11 6 1.7733 -6.3615 3.4420 12 6 0.5637 -6.0349 4.0259 13 6 -0.3824 -5.3285 3.3070 14 6 -0.1187 -4.9483 2.0044 15 6 3.5755 -3.5928 -0.0011 16 6 4.0849 -3.6100 -1.4437 17 8 3.4243 -2.6672 -2.2903 18 6 5.6145 -3.6065 -1.5710 19 7 5.5733 -5.0740 -1.4841 20 6 6.4242 -6.0611 -1.0639 21 1 7.3251 -5.8048 -0.5261 22 6 6.1289 -7.3914 -1.3290 23 7 5.2248 -7.6967 -2.2354 24 14 7.0092 -8.7478 -0.3940 25 1 6.5129 -10.0694 -0.8549 26 1 8.4701 -8.6533 -0.6433 27 1 6.7446 -8.5992 1.0596 28 6 4.2184 -5.0152 -2.0533 29 1 -0.3632 -0.5139 0.8899 30 1 -0.3633 1.0276 0.0005 31 1 -0.3632 -0.5138 -0.8900 32 1 2.4422 1.6198 -1.0277 33 1 1.6715 2.0647 0.5139 34 1 3.2130 1.1748 0.5139 35 1 3.2520 -1.1517 -0.0001 36 1 0.4389 -4.7392 -0.5397 37 1 1.9798 -5.6288 -0.4872 38 1 2.9781 -6.2454 1.6798 39 1 2.5124 -6.9137 4.0036 40 1 0.3576 -6.3320 5.0436 41 1 -1.3277 -5.0738 3.7630 42 1 -0.8581 -4.3969 1.4427 43 1 3.9389 -4.4767 0.5232 44 1 3.9389 -2.6968 0.5021 45 1 2.4600 -2.7387 -2.2814 46 1 6.1193 -3.1358 -0.7273 47 1 5.9701 -3.2385 -2.5334 48 1 4.8306 -6.9987 -2.7817 49 1 4.2051 -5.0185 -3.1432 50 1 3.5338 -5.7446 -1.6206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177500398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:29 Heat of formation + Delta-G solvation = 23.336489 kcal Electronic energy + Delta-G solvation = -31631.429917 eV Core-core repulsion = 27626.332473 eV Total energy + Delta-G solvation = -4005.097444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.50193 -38.98363 -38.78079 -35.93580 -35.22543 -34.65111 -32.25811 -31.78821 -30.75760 -28.39511 -28.18284 -27.78123 -26.49453 -25.31645 -25.00065 -22.53639 -22.26424 -21.69296 -20.14735 -19.15056 -18.12961 -17.50392 -17.20120 -16.99395 -16.31772 -15.92409 -15.21275 -14.89229 -14.68667 -14.44577 -14.35969 -14.05401 -13.93281 -13.77737 -13.66572 -13.44570 -13.26307 -12.95401 -12.74761 -12.53324 -12.40856 -12.33198 -12.09374 -11.92348 -11.81132 -11.74300 -11.53197 -11.27173 -11.11580 -10.90232 -10.81723 -10.73933 -10.22546 -10.07293 -9.58821 -9.52105 -9.17741 -9.15075 -8.84834 -8.78517 -8.67148 -8.39946 -7.13654 -6.19094 -3.26805 1.36002 1.43609 1.53953 3.12891 3.35939 3.42961 3.44928 3.63723 3.98477 4.32524 4.52373 4.57954 4.79288 4.89088 4.93411 4.99345 5.03925 5.11057 5.13138 5.18354 5.27448 5.34374 5.38983 5.44457 5.46078 5.58326 5.61829 5.62921 5.73280 5.78224 5.82854 5.84761 5.98520 6.05921 6.10299 6.19299 6.20345 6.31216 6.38191 6.46337 6.50796 6.57365 6.58844 6.62545 6.66886 6.76923 6.78139 7.12057 7.14873 7.51377 7.93774 8.20807 8.30615 8.81009 9.65600 10.37374 11.20187 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.004615 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.289067 B = 6065.685275 C = 8528.365555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.041 4.041 3 C -0.124 4.124 4 C -0.225 4.225 5 C 0.546 3.454 6 O -0.543 6.543 7 N -0.600 5.600 8 C 0.150 3.850 9 C -0.101 4.101 10 C -0.099 4.099 11 C -0.124 4.124 12 C -0.121 4.121 13 C -0.130 4.130 14 C -0.096 4.096 15 C 0.116 3.884 16 C 0.057 3.943 17 O -0.547 6.547 18 C 0.137 3.863 19 N -0.607 5.607 20 C -0.315 4.315 21 H 0.076 0.924 22 C -0.029 4.029 23 N -0.930 5.930 24 Si 1.074 2.926 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.114 3.886 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.365 0.635 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.266 0.734 49 H 0.039 0.961 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 12.090 8.837 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.043 4.043 3 C -0.181 4.181 4 C -0.246 4.246 5 C 0.338 3.662 6 O -0.423 6.423 7 N -0.332 5.332 8 C 0.028 3.972 9 C -0.102 4.102 10 C -0.118 4.118 11 C -0.142 4.142 12 C -0.139 4.139 13 C -0.148 4.148 14 C -0.114 4.114 15 C -0.007 4.007 16 C 0.014 3.986 17 O -0.350 6.350 18 C 0.010 3.990 19 N -0.336 5.336 20 C -0.442 4.442 21 H 0.094 0.906 22 C -0.229 4.229 23 N -0.572 5.572 24 Si 0.903 3.097 25 H -0.209 1.209 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.013 4.013 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.212 0.788 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.320 10.410 9.026 16.635 hybrid contribution -0.200 1.345 -0.309 1.395 sum -9.520 11.755 8.718 17.459 Atomic orbital electron populations 1.21008 0.91009 1.00676 1.04201 1.22511 0.96666 0.94472 0.90640 1.20986 0.99985 0.94245 1.02871 1.22495 1.00527 0.91619 1.09910 1.18646 0.87127 0.84258 0.76167 1.90729 1.13572 1.87465 1.50551 1.47896 1.06811 1.05454 1.73001 1.20475 0.98274 0.85451 0.92972 1.20203 0.94541 0.98681 0.96815 1.21255 0.99200 0.96943 0.94386 1.21149 0.97204 1.00476 0.95386 1.21130 0.94164 0.98965 0.99635 1.21099 0.99325 0.99546 0.94848 1.21152 0.96778 0.98444 0.95038 1.21852 0.78335 1.04500 0.95986 1.23834 0.94642 0.90534 0.89609 1.86493 1.22842 1.58659 1.67048 1.22307 0.89882 0.87640 0.99149 1.45601 1.13950 1.00852 1.73227 1.19760 1.05156 0.86530 1.32714 0.90602 1.25835 1.00631 0.97011 0.99442 1.70775 1.29773 1.36321 1.20334 0.83373 0.74903 0.76135 0.75246 1.20894 1.21995 1.21887 1.22951 0.88704 0.92912 0.96686 0.90161 0.93336 0.90056 0.90344 0.91313 0.91227 0.85256 0.89200 0.88762 0.85479 0.86109 0.86504 0.86494 0.85727 0.88029 0.89851 0.78833 0.93302 0.93928 0.92225 0.94344 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 8.33 36.01 0.30 -0.95 16 2 C -0.04 -0.46 6.11 -101.17 -0.62 -1.07 16 3 C -0.12 -1.04 9.98 36.01 0.36 -0.68 16 4 C -0.22 -2.85 7.88 -37.80 -0.30 -3.15 16 5 C 0.55 7.88 6.28 -12.67 -0.08 7.80 16 6 O -0.54 -8.56 12.47 5.26 0.07 -8.49 16 7 N -0.60 -8.71 2.05 -176.45 -0.36 -9.08 16 8 C 0.15 2.24 5.52 -5.19 -0.03 2.21 16 9 C -0.10 -1.49 5.45 -104.63 -0.57 -2.07 16 10 C -0.10 -1.49 9.72 -39.58 -0.38 -1.87 16 11 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 12 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 13 C -0.13 -1.62 10.05 -39.59 -0.40 -2.02 16 14 C -0.10 -1.33 9.68 -39.59 -0.38 -1.71 16 15 C 0.12 1.80 4.88 -4.04 -0.02 1.78 16 16 C 0.06 1.00 1.87 -89.97 -0.17 0.84 16 17 O -0.55 -9.08 12.57 -35.23 -0.44 -9.52 16 18 C 0.14 2.74 8.10 -8.50 -0.07 2.67 16 19 N -0.61 -14.63 3.48 -184.55 -0.64 -15.27 16 20 C -0.32 -8.47 10.67 -15.06 -0.16 -8.63 16 21 H 0.08 2.00 7.88 -52.48 -0.41 1.59 16 22 C -0.03 -0.80 5.46 -17.43 -0.10 -0.89 16 23 N -0.93 -27.51 13.36 55.49 0.74 -26.77 16 24 Si 1.07 24.51 29.95 -169.99 -5.09 19.42 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 28 C 0.11 2.48 5.52 -8.36 -0.05 2.44 16 29 H 0.08 1.00 7.22 -51.93 -0.37 0.62 16 30 H 0.05 0.43 7.94 -51.93 -0.41 0.02 16 31 H 0.08 1.00 7.22 -51.93 -0.37 0.63 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 34 H 0.07 0.56 8.07 -51.92 -0.42 0.14 16 35 H 0.13 1.61 6.21 -52.49 -0.33 1.29 16 36 H 0.09 1.31 7.38 -51.93 -0.38 0.93 16 37 H 0.09 1.53 6.25 -51.93 -0.32 1.20 16 38 H 0.13 2.04 7.76 -52.49 -0.41 1.63 16 39 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.12 1.72 7.85 -52.49 -0.41 1.31 16 43 H 0.10 1.77 7.57 -51.93 -0.39 1.38 16 44 H 0.08 1.17 6.06 -51.93 -0.31 0.85 16 45 H 0.36 5.52 7.23 45.56 0.33 5.85 16 46 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 47 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.27 7.88 5.80 -40.82 -0.24 7.64 16 49 H 0.04 0.91 7.95 -51.93 -0.41 0.50 16 50 H 0.05 1.19 6.16 -51.93 -0.32 0.87 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -30.87 401.96 -10.07 -40.94 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.94 Total: 11.95 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.46 Total: -9.23 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.26 Total: -51.12 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.38 Total: -18.02 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.09 Total: 19.42 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.87 -10.07 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177500398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.279 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds