Wall clock time and date at job start Sat Apr 11 2020 07:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47165 * 2 1 4 4 C 1.52999 * 109.47080 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47240 * 180.02562 * 4 3 2 6 6 C 1.37098 * 120.00139 * 85.59547 * 5 4 3 7 7 H 1.08002 * 120.00235 * 210.56289 * 6 5 4 8 8 C 1.38947 * 119.99483 * 30.56528 * 6 5 4 9 9 N 1.31410 * 120.00179 * 40.31523 * 8 6 5 10 10 Si 1.86801 * 119.99811 * 220.31086 * 8 6 5 11 11 H 1.48503 * 109.47130 * 179.97438 * 10 8 6 12 12 H 1.48495 * 109.47587 * 300.00467 * 10 8 6 13 13 H 1.48500 * 109.46891 * 60.00605 * 10 8 6 14 14 C 1.34784 * 120.00086 * 265.60527 * 5 4 3 15 15 O 1.21297 * 119.99978 * 359.97438 * 14 5 4 16 16 C 1.50694 * 120.00030 * 179.97438 * 14 5 4 17 17 N 1.46497 * 109.47268 * 179.97438 * 16 14 5 18 18 C 1.46765 * 124.34636 * 89.99724 * 17 16 14 19 19 C 1.54482 * 105.47549 * 197.01914 * 18 17 16 20 20 H 1.08994 * 110.96807 * 92.70838 * 19 18 17 21 21 C 1.50705 * 110.97101 * 216.43134 * 19 18 17 22 22 C 1.38233 * 119.99565 * 59.72596 * 21 19 18 23 23 C 1.38242 * 119.99423 * 179.74257 * 22 21 19 24 24 C 1.38231 * 120.00149 * 0.53418 * 23 22 21 25 25 C 1.38244 * 119.99810 * 359.74136 * 24 23 22 26 26 C 1.38226 * 120.00106 * 239.99878 * 21 19 18 27 27 C 1.54633 * 101.76440 * 334.58578 * 19 18 17 28 28 C 1.34417 * 124.35692 * 269.70478 * 17 16 14 29 29 O 1.21289 * 124.93481 * 359.56972 * 28 17 16 30 30 H 1.09004 * 109.47015 * 60.00441 * 1 2 3 31 31 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47451 * 300.00264 * 1 2 3 33 33 H 1.09002 * 109.47233 * 239.99690 * 2 1 3 34 34 H 1.08999 * 109.47046 * 120.00061 * 2 1 3 35 35 H 1.09004 * 109.46814 * 59.99927 * 3 2 1 36 36 H 1.08999 * 109.47189 * 299.99974 * 3 2 1 37 37 H 1.09004 * 109.46905 * 60.00536 * 4 3 2 38 38 H 1.08999 * 109.47540 * 300.00312 * 4 3 2 39 39 H 0.96999 * 120.00159 * 5.84906 * 9 8 6 40 40 H 1.08996 * 109.47363 * 299.99937 * 16 14 5 41 41 H 1.09008 * 109.47157 * 59.99443 * 16 14 5 42 42 H 1.09000 * 110.24768 * 316.02366 * 18 17 16 43 43 H 1.09003 * 110.24570 * 78.01882 * 18 17 16 44 44 H 1.07999 * 120.00934 * 359.97438 * 22 21 19 45 45 H 1.08002 * 120.00076 * 180.29574 * 23 22 21 46 46 H 1.07994 * 120.00212 * 179.76412 * 24 23 22 47 47 H 1.08001 * 119.99936 * 180.02562 * 25 24 23 48 48 H 1.08009 * 120.00062 * 0.02562 * 26 21 19 49 49 H 1.08998 * 110.48648 * 143.47174 * 27 19 18 50 50 H 1.08999 * 110.48264 * 265.98580 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2004 3.5000 1.1853 7 1 4.0712 4.5719 1.2138 8 6 4.5108 2.8064 2.3486 9 7 5.3832 1.8243 2.3151 10 14 3.6878 3.2701 3.9602 11 1 4.1864 2.3849 5.0433 12 1 4.0049 4.6829 4.2895 13 1 2.2172 3.1105 3.8288 14 6 4.3679 3.4296 -1.1622 15 8 4.2425 2.8311 -2.2098 16 6 4.8697 4.8505 -1.1616 17 7 5.1335 5.2758 -2.5384 18 6 4.1435 5.9185 -3.4107 19 6 4.7061 5.7825 -4.8430 20 1 4.3262 4.8832 -5.3275 21 6 4.3933 7.0071 -5.6639 22 6 4.8538 8.2462 -5.2596 23 6 4.5714 9.3687 -6.0154 24 6 3.8192 9.2536 -7.1695 25 6 3.3540 8.0152 -7.5707 26 6 3.6413 6.8920 -6.8179 27 6 6.2248 5.6677 -4.5756 28 6 6.3150 5.1328 -3.1634 29 8 7.3081 4.6435 -2.6679 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8892 38 1 3.9330 0.9287 0.8908 39 1 5.8732 1.6384 1.4988 40 1 4.1166 5.5016 -0.7179 41 1 5.7899 4.9106 -0.5804 42 1 3.1838 5.4078 -3.3323 43 1 4.0345 6.9704 -3.1466 44 1 5.4373 8.3369 -4.3553 45 1 4.9351 10.3362 -5.7022 46 1 3.5954 10.1311 -7.7579 47 1 2.7667 7.9252 -8.4725 48 1 3.2775 5.9245 -7.1312 49 1 6.6847 4.9739 -5.2794 50 1 6.6989 6.6469 -4.6417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180308898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:49 Heat of formation + Delta-G solvation = -66.537272 kcal Electronic energy + Delta-G solvation = -30287.715259 eV Core-core repulsion = 26278.720596 eV Total energy + Delta-G solvation = -4008.994663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87629 -40.53382 -39.82709 -37.64515 -37.24181 -35.70090 -34.56313 -33.44243 -31.78683 -31.40605 -30.23040 -28.53303 -27.88664 -26.53811 -24.56493 -24.08284 -23.31891 -22.10590 -21.49410 -21.35457 -20.70621 -19.22472 -18.27844 -17.95136 -17.49646 -17.16447 -16.61616 -16.40534 -16.22331 -16.01818 -15.78313 -15.59965 -15.47454 -14.86836 -14.70041 -14.59685 -14.53300 -14.18686 -14.11465 -13.83768 -13.73818 -13.68368 -13.60742 -13.44403 -13.00832 -12.72173 -12.51420 -12.36307 -12.26406 -12.21465 -12.07595 -11.94091 -11.93333 -11.84882 -11.73239 -11.51146 -11.05061 -10.99633 -10.63362 -9.84836 -9.77733 -9.69741 -9.58553 -8.83211 -6.04105 0.43026 0.55382 1.41500 1.49853 1.59796 1.84429 1.90282 1.93439 2.42716 2.78041 2.86325 3.00719 3.23339 3.57963 3.61511 3.91686 3.95063 4.00899 4.05488 4.15986 4.18706 4.22153 4.25681 4.28693 4.36859 4.38512 4.46871 4.52415 4.58643 4.64046 4.66039 4.73946 4.75682 4.76246 4.88887 4.91253 5.01602 5.05282 5.13863 5.22283 5.22546 5.30505 5.36364 5.40128 5.58135 5.62757 5.68563 5.73624 5.89821 6.08694 6.15797 6.26784 6.94630 7.05406 7.47042 7.82965 8.34917 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.002754 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.216174 B =10162.937412 C =11054.468155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.107 4.107 4 C 0.108 3.892 5 N -0.448 5.448 6 C -0.467 4.467 7 H 0.094 0.906 8 C -0.006 4.006 9 N -0.860 5.860 10 Si 1.106 2.894 11 H -0.288 1.288 12 H -0.261 1.261 13 H -0.266 1.266 14 C 0.431 3.569 15 O -0.629 6.629 16 C 0.137 3.863 17 N -0.599 5.599 18 C 0.114 3.886 19 C -0.045 4.045 20 H 0.097 0.903 21 C -0.078 4.078 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.130 4.130 28 C 0.504 3.496 29 O -0.590 6.590 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.261 0.739 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.130 0.870 49 H 0.109 0.891 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 13.227 -13.973 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C -0.146 4.146 4 C -0.015 4.015 5 N -0.167 5.167 6 C -0.592 4.592 7 H 0.112 0.888 8 C -0.214 4.214 9 N -0.491 5.491 10 Si 0.925 3.075 11 H -0.213 1.213 12 H -0.185 1.185 13 H -0.191 1.191 14 C 0.221 3.779 15 O -0.517 6.517 16 C 0.012 3.988 17 N -0.330 5.330 18 C -0.008 4.008 19 C -0.064 4.064 20 H 0.115 0.885 21 C -0.078 4.078 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.169 4.169 28 C 0.294 3.706 29 O -0.471 6.471 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.157 0.843 46 H 0.160 0.840 47 H 0.159 0.841 48 H 0.148 0.852 49 H 0.127 0.873 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.250 12.217 -12.543 19.356 hybrid contribution 0.695 -0.171 -1.296 1.481 sum -7.555 12.046 -13.839 19.842 Atomic orbital electron populations 1.21698 0.93696 1.02502 1.01987 1.21451 0.97583 0.94986 1.01679 1.21664 0.93840 0.98019 1.01027 1.21371 0.95381 0.84512 1.00280 1.43827 1.54772 1.12404 1.05668 1.20313 1.57314 0.95301 0.86314 0.88812 1.27634 0.93476 0.94624 1.05667 1.70877 1.16140 1.32612 1.29441 0.83096 0.76384 0.77136 0.70851 1.21328 1.18508 1.19118 1.21392 0.81401 0.91129 0.83988 1.90477 1.60305 1.68133 1.32790 1.20807 1.02510 0.92984 0.82507 1.48066 1.12916 1.58718 1.13337 1.22360 0.91737 0.98401 0.88286 1.20957 0.93773 0.97894 0.93783 0.88484 1.19446 0.99348 0.93211 0.95833 1.21174 1.00338 0.92209 1.00384 1.21409 0.98505 0.98961 0.95234 1.21503 0.97591 0.98306 0.96933 1.21428 0.99993 0.92457 1.00304 1.21271 0.98139 0.99869 0.94543 1.22436 0.97886 1.04763 0.91859 1.21728 0.82059 0.76992 0.89822 1.90677 1.35569 1.47675 1.73189 0.92699 0.91017 0.92419 0.92452 0.92147 0.92110 0.93595 0.94129 0.91677 0.92990 0.86240 0.89845 0.90854 0.88419 0.85590 0.84253 0.84031 0.84131 0.85169 0.87288 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.92 16 2 C -0.12 -3.88 5.93 30.59 0.18 -3.70 16 3 C -0.11 -4.32 5.52 30.59 0.17 -4.15 16 4 C 0.11 5.27 4.95 86.38 0.43 5.70 16 5 N -0.45 -22.92 2.44 -635.53 -1.55 -24.47 16 6 C -0.47 -23.59 8.53 84.04 0.72 -22.87 16 7 H 0.09 4.48 7.00 -2.91 -0.02 4.46 16 8 C -0.01 -0.32 4.51 84.93 0.38 0.07 16 9 N -0.86 -47.76 12.22 21.66 0.26 -47.50 16 10 Si 1.11 43.62 30.05 68.60 2.06 45.68 16 11 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 13 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 14 C 0.43 21.77 7.71 87.65 0.68 22.44 16 15 O -0.63 -34.40 15.95 -3.08 -0.05 -34.45 16 16 C 0.14 5.80 5.03 85.63 0.43 6.23 16 17 N -0.60 -21.92 2.42 -822.32 -1.99 -23.91 16 18 C 0.11 3.04 6.84 86.83 0.59 3.63 16 19 C -0.05 -1.03 3.37 -10.48 -0.04 -1.06 16 20 H 0.10 2.28 7.96 -2.39 -0.02 2.26 16 21 C -0.08 -1.43 4.96 -19.87 -0.10 -1.53 16 22 C -0.12 -2.05 8.05 22.27 0.18 -1.88 16 23 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 24 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 25 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 26 C -0.12 -1.98 9.69 22.26 0.22 -1.77 16 27 C -0.13 -3.36 6.30 30.59 0.19 -3.17 16 28 C 0.50 19.51 8.02 87.90 0.71 20.22 16 29 O -0.59 -29.05 17.59 -3.06 -0.05 -29.11 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 2.08 7.29 -2.39 -0.02 2.07 16 38 H 0.07 3.36 5.75 -2.39 -0.01 3.35 16 39 H 0.26 15.44 8.13 -92.71 -0.75 14.69 16 40 H 0.12 4.32 7.64 -2.39 -0.02 4.30 16 41 H 0.08 3.89 7.87 -2.38 -0.02 3.87 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.10 2.09 7.13 -2.39 -0.02 2.07 16 44 H 0.13 1.98 7.34 -2.91 -0.02 1.96 16 45 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 47 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 48 H 0.13 1.89 7.99 -2.91 -0.02 1.87 16 49 H 0.11 2.69 8.14 -2.39 -0.02 2.68 16 50 H 0.13 2.67 6.67 -2.39 -0.02 2.65 16 Total: -1.00 -72.89 409.68 5.74 -67.15 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.94 Total: 35.75 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.12 Total: 10.85 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -3.28 Total: -95.87 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: -0.10 Total: -63.56 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.06 Total: 45.68 kcal Total: -72.89 5.74 -67.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180308898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.616 kcal (2) G-P(sol) polarization free energy of solvation -72.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds