Wall clock time and date at job start Sat Apr 11 2020 07:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47382 * 2 1 4 4 C 1.52996 * 109.47001 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46959 * 179.97438 * 4 3 2 6 6 C 1.37101 * 119.99799 * 90.00170 * 5 4 3 7 7 H 1.07996 * 120.00199 * 214.98286 * 6 5 4 8 8 C 1.38946 * 119.99930 * 34.97716 * 6 5 4 9 9 N 1.31417 * 120.00193 * 22.25925 * 8 6 5 10 10 Si 1.86804 * 120.00227 * 202.25462 * 8 6 5 11 11 H 1.48497 * 109.47200 * 90.00366 * 10 8 6 12 12 H 1.48499 * 109.47027 * 210.00605 * 10 8 6 13 13 H 1.48500 * 109.47006 * 329.99999 * 10 8 6 14 14 C 1.34774 * 120.00232 * 270.00515 * 5 4 3 15 15 O 1.21289 * 119.99920 * 5.02038 * 14 5 4 16 16 C 1.50700 * 120.00034 * 185.02220 * 14 5 4 17 17 N 1.46504 * 109.47150 * 178.61943 * 16 14 5 18 18 C 1.46767 * 124.34741 * 89.99792 * 17 16 14 19 19 C 1.54470 * 105.47201 * 162.98328 * 18 17 16 20 20 H 1.09000 * 110.97244 * 267.26270 * 19 18 17 21 21 C 1.50707 * 110.96969 * 143.53488 * 19 18 17 22 22 C 1.38233 * 119.99755 * 299.72641 * 21 19 18 23 23 C 1.38236 * 119.99603 * 179.78640 * 22 21 19 24 24 C 1.38234 * 120.00048 * 0.46387 * 23 22 21 25 25 C 1.38236 * 120.00063 * 359.77198 * 24 23 22 26 26 C 1.38233 * 119.99930 * 0.02562 * 25 24 23 27 27 C 1.54633 * 101.76484 * 25.41865 * 19 18 17 28 28 C 1.34413 * 124.35153 * 269.70178 * 17 16 14 29 29 O 1.21282 * 124.93976 * 0.38796 * 28 17 16 30 30 H 1.09000 * 109.47042 * 59.99557 * 1 2 3 31 31 H 1.09002 * 109.46633 * 299.99820 * 1 2 3 32 32 H 1.09000 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47042 * 120.00443 * 2 1 3 34 34 H 1.09002 * 109.46633 * 240.00180 * 2 1 3 35 35 H 1.08992 * 109.47225 * 300.00438 * 3 2 1 36 36 H 1.08999 * 109.46777 * 60.00055 * 3 2 1 37 37 H 1.08992 * 109.47596 * 300.00342 * 4 3 2 38 38 H 1.08999 * 109.47203 * 60.00447 * 4 3 2 39 39 H 0.96997 * 120.00246 * 178.61414 * 9 8 6 40 40 H 1.09000 * 109.46837 * 298.62278 * 16 14 5 41 41 H 1.08996 * 109.47140 * 58.61941 * 16 14 5 42 42 H 1.08998 * 110.24462 * 281.98945 * 18 17 16 43 43 H 1.09006 * 110.24303 * 43.89740 * 18 17 16 44 44 H 1.08003 * 119.99964 * 0.02562 * 22 21 19 45 45 H 1.08007 * 119.99834 * 180.25761 * 23 22 21 46 46 H 1.08001 * 119.99871 * 179.78775 * 24 23 22 47 47 H 1.07995 * 119.99816 * 179.97438 * 25 24 23 48 48 H 1.07996 * 120.00082 * 179.97438 * 26 25 24 49 49 H 1.08994 * 110.48877 * 93.88118 * 27 19 18 50 50 H 1.09001 * 110.48494 * 216.39194 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2865 3.4706 1.1871 7 1 4.0922 4.5296 1.2710 8 6 4.7676 2.7637 2.2823 9 7 5.4077 1.6300 2.1031 10 14 4.5045 3.4247 4.0096 11 1 3.2234 2.9028 4.5495 12 1 5.6239 2.9884 4.8823 13 1 4.4572 4.9084 3.9698 14 6 4.2835 3.4583 -1.1674 15 8 3.9962 2.9199 -2.2156 16 6 4.8922 4.8369 -1.1704 17 7 5.0641 5.2918 -2.5524 18 6 4.0530 6.0383 -3.3103 19 6 4.8101 6.6634 -4.5028 20 1 5.1538 7.6695 -4.2626 21 6 3.9526 6.6708 -5.7421 22 6 3.4844 5.4803 -6.2658 23 6 2.6941 5.4875 -7.3999 24 6 2.3800 6.6845 -8.0159 25 6 2.8522 7.8747 -7.4949 26 6 3.6390 7.8678 -6.3584 27 6 6.0038 5.6933 -4.6618 28 6 6.1703 5.0841 -3.2872 29 8 7.1573 4.4921 -2.9047 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9562 0.8900 37 1 3.9331 0.9286 0.8907 38 1 3.9338 0.9284 -0.8891 39 1 5.7611 1.1467 2.8662 40 1 4.2344 5.5256 -0.6403 41 1 5.8623 4.8069 -0.6745 42 1 3.2759 5.3632 -3.6689 43 1 3.6157 6.8193 -2.6882 44 1 3.7329 4.5448 -5.7866 45 1 2.3249 4.5576 -7.8067 46 1 1.7654 6.6899 -8.9039 47 1 2.6071 8.8098 -7.9764 48 1 4.0083 8.7976 -5.9516 49 1 5.7746 4.9239 -5.3990 50 1 6.9031 6.2387 -4.9480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180308899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:53 Heat of formation + Delta-G solvation = -49.213262 kcal Electronic energy + Delta-G solvation = -30384.713131 eV Core-core repulsion = 26376.469693 eV Total energy + Delta-G solvation = -4008.243438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.53606 -39.08012 -38.28201 -36.08211 -35.33544 -33.93336 -33.25911 -31.52705 -31.05214 -30.23093 -28.67593 -27.26355 -26.43141 -24.91870 -23.37264 -22.71670 -22.44905 -20.48697 -20.44421 -19.55987 -18.85894 -17.29393 -17.11729 -16.24349 -16.06986 -15.63318 -15.28811 -14.86255 -14.79515 -14.70204 -14.35738 -14.14166 -13.93886 -13.52848 -13.39666 -13.32998 -13.15405 -13.04105 -12.73599 -12.65496 -12.34402 -12.22381 -11.97274 -11.58589 -11.45864 -11.40650 -11.30270 -11.23357 -11.13689 -10.87976 -10.84284 -10.56192 -10.49846 -10.33480 -10.22459 -9.71889 -9.46074 -9.20476 -9.04155 -8.87049 -8.77837 -7.96692 -7.53180 -6.40309 -4.10012 1.18631 1.27915 3.00405 3.08463 3.19075 3.20470 3.35989 3.65142 3.86983 4.07751 4.35806 4.55261 4.66593 4.81382 4.84872 4.86624 4.95810 5.02033 5.10505 5.15407 5.39108 5.48699 5.48718 5.52513 5.59480 5.66328 5.70327 5.76722 5.85467 5.91732 5.93412 6.03446 6.07186 6.18354 6.24535 6.28268 6.33270 6.38341 6.40255 6.43487 6.50841 6.59486 6.74392 6.84614 6.86321 6.88913 7.13660 7.32790 7.48723 7.57566 7.89671 8.32824 8.60546 9.04071 9.49122 9.92116 10.59795 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003005 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.837722 B = 9314.301397 C =10724.532329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.125 4.125 4 C 0.113 3.887 5 N -0.434 5.434 6 C -0.348 4.348 7 H 0.090 0.910 8 C 0.047 3.953 9 N -0.852 5.852 10 Si 0.914 3.086 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.453 3.547 15 O -0.599 6.599 16 C 0.126 3.874 17 N -0.596 5.596 18 C 0.114 3.886 19 C -0.061 4.061 20 H 0.098 0.902 21 C -0.070 4.070 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.145 4.145 28 C 0.520 3.480 29 O -0.531 6.531 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.271 0.729 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.128 0.872 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.105 0.895 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.662 10.155 -12.288 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.163 4.163 4 C -0.011 4.011 5 N -0.153 5.153 6 C -0.476 4.476 7 H 0.107 0.893 8 C -0.160 4.160 9 N -0.487 5.487 10 Si 0.740 3.260 11 H -0.202 1.202 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.240 3.760 15 O -0.485 6.485 16 C 0.002 3.998 17 N -0.329 5.329 18 C -0.009 4.009 19 C -0.080 4.080 20 H 0.116 0.884 21 C -0.071 4.071 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.131 4.131 27 C -0.185 4.185 28 C 0.307 3.693 29 O -0.407 6.407 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.123 0.877 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.196 9.373 -12.364 16.707 hybrid contribution -0.260 0.220 1.045 1.099 sum -6.455 9.593 -11.318 16.181 Atomic orbital electron populations 1.21754 0.96664 1.00651 1.01427 1.21435 0.94943 0.97849 1.01570 1.21865 0.97902 0.95365 1.01203 1.21448 0.91207 0.84919 1.03487 1.43445 1.55355 1.12154 1.04305 1.19404 1.45363 0.95173 0.87663 0.89261 1.25352 0.94039 0.96273 1.00335 1.69915 1.30654 1.16356 1.31805 0.86147 0.78151 0.79464 0.82215 1.20183 1.20910 1.19288 1.20742 0.82100 0.88922 0.84235 1.90507 1.57090 1.68997 1.31888 1.21085 1.03535 0.94971 0.80257 1.47847 1.16007 1.55307 1.13747 1.22131 0.91454 0.95330 0.92003 1.21102 0.94345 1.00081 0.92464 0.88360 1.19595 0.98165 0.93440 0.95882 1.21179 0.97261 0.98232 0.96040 1.21171 0.98233 0.98165 0.95920 1.21157 1.00293 0.92726 1.00052 1.21105 0.98325 0.98051 0.96543 1.21038 0.98705 0.97344 0.96004 1.22465 0.99417 0.99807 0.96792 1.20657 0.82549 0.79205 0.86906 1.90728 1.31915 1.42347 1.75733 0.93139 0.93045 0.93441 0.92256 0.92481 0.93077 0.92328 0.87546 0.93113 0.91869 0.88913 0.87447 0.90480 0.90463 0.85429 0.86008 0.86304 0.86199 0.85974 0.87692 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.21 16 3 C -0.12 -2.56 5.54 -26.73 -0.15 -2.71 16 4 C 0.11 2.73 4.97 -4.04 -0.02 2.71 16 5 N -0.43 -10.90 2.54 -114.82 -0.29 -11.19 16 6 C -0.35 -8.62 8.64 -14.93 -0.13 -8.75 16 7 H 0.09 2.06 7.06 -52.49 -0.37 1.69 16 8 C 0.05 1.17 4.96 -17.47 -0.09 1.08 16 9 N -0.85 -22.42 11.33 55.50 0.63 -21.79 16 10 Si 0.91 19.06 29.61 -169.99 -5.03 14.03 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 C 0.45 11.09 7.69 -10.99 -0.08 11.01 16 15 O -0.60 -15.86 16.06 5.55 0.09 -15.77 16 16 C 0.13 2.58 5.14 -5.19 -0.03 2.55 16 17 N -0.60 -10.74 2.42 -173.79 -0.42 -11.16 16 18 C 0.11 1.56 6.84 -3.13 -0.02 1.54 16 19 C -0.06 -0.67 3.37 -90.14 -0.30 -0.98 16 20 H 0.10 0.88 7.96 -51.93 -0.41 0.47 16 21 C -0.07 -0.74 4.96 -104.62 -0.52 -1.26 16 22 C -0.11 -1.24 8.06 -39.58 -0.32 -1.56 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.11 -1.03 9.69 -39.58 -0.38 -1.41 16 27 C -0.14 -1.92 6.30 -26.74 -0.17 -2.09 16 28 C 0.52 9.82 8.02 -10.87 -0.09 9.73 16 29 O -0.53 -12.51 17.59 5.56 0.10 -12.41 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.11 2.72 5.36 -51.93 -0.28 2.44 16 38 H 0.05 1.29 7.50 -51.93 -0.39 0.91 16 39 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.09 1.64 7.59 -51.93 -0.39 1.25 16 41 H 0.11 2.37 7.90 -51.93 -0.41 1.96 16 42 H 0.08 1.16 7.17 -51.93 -0.37 0.79 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.13 1.60 7.32 -52.48 -0.38 1.22 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.12 0.87 7.99 -52.49 -0.42 0.45 16 49 H 0.10 1.38 6.63 -51.93 -0.34 1.03 16 50 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 409.29 15.07 6.17 6.17 Total: -1.00 -32.22 409.29 -10.03 -42.24 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.99 Total: 8.52 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -3.28 Total: 1.38 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.08 Total: -44.15 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: 0.19 Total: -28.18 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.22 -10.03 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180308899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.970 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds