Wall clock time and date at job start Sat Apr 11 2020 07:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47382 * 2 1 4 4 C 1.52996 * 109.47001 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46959 * 179.97438 * 4 3 2 6 6 C 1.37101 * 119.99799 * 90.00170 * 5 4 3 7 7 H 1.07996 * 120.00199 * 214.98286 * 6 5 4 8 8 C 1.38946 * 119.99930 * 34.97716 * 6 5 4 9 9 N 1.31417 * 120.00193 * 22.25925 * 8 6 5 10 10 Si 1.86804 * 120.00227 * 202.25462 * 8 6 5 11 11 H 1.48497 * 109.47200 * 90.00366 * 10 8 6 12 12 H 1.48499 * 109.47027 * 210.00605 * 10 8 6 13 13 H 1.48500 * 109.47006 * 329.99999 * 10 8 6 14 14 C 1.34774 * 120.00232 * 270.00515 * 5 4 3 15 15 O 1.21289 * 119.99920 * 5.02038 * 14 5 4 16 16 C 1.50700 * 120.00034 * 185.02220 * 14 5 4 17 17 N 1.46504 * 109.47150 * 178.61943 * 16 14 5 18 18 C 1.46767 * 124.34741 * 89.99792 * 17 16 14 19 19 C 1.54470 * 105.47201 * 162.98328 * 18 17 16 20 20 H 1.09000 * 110.97244 * 267.26270 * 19 18 17 21 21 C 1.50707 * 110.96969 * 143.53488 * 19 18 17 22 22 C 1.38233 * 119.99755 * 299.72641 * 21 19 18 23 23 C 1.38236 * 119.99603 * 179.78640 * 22 21 19 24 24 C 1.38234 * 120.00048 * 0.46387 * 23 22 21 25 25 C 1.38236 * 120.00063 * 359.77198 * 24 23 22 26 26 C 1.38233 * 119.99930 * 0.02562 * 25 24 23 27 27 C 1.54633 * 101.76484 * 25.41865 * 19 18 17 28 28 C 1.34413 * 124.35153 * 269.70178 * 17 16 14 29 29 O 1.21282 * 124.93976 * 0.38796 * 28 17 16 30 30 H 1.09000 * 109.47042 * 59.99557 * 1 2 3 31 31 H 1.09002 * 109.46633 * 299.99820 * 1 2 3 32 32 H 1.09000 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47042 * 120.00443 * 2 1 3 34 34 H 1.09002 * 109.46633 * 240.00180 * 2 1 3 35 35 H 1.08992 * 109.47225 * 300.00438 * 3 2 1 36 36 H 1.08999 * 109.46777 * 60.00055 * 3 2 1 37 37 H 1.08992 * 109.47596 * 300.00342 * 4 3 2 38 38 H 1.08999 * 109.47203 * 60.00447 * 4 3 2 39 39 H 0.96997 * 120.00246 * 178.61414 * 9 8 6 40 40 H 1.09000 * 109.46837 * 298.62278 * 16 14 5 41 41 H 1.08996 * 109.47140 * 58.61941 * 16 14 5 42 42 H 1.08998 * 110.24462 * 281.98945 * 18 17 16 43 43 H 1.09006 * 110.24303 * 43.89740 * 18 17 16 44 44 H 1.08003 * 119.99964 * 0.02562 * 22 21 19 45 45 H 1.08007 * 119.99834 * 180.25761 * 23 22 21 46 46 H 1.08001 * 119.99871 * 179.78775 * 24 23 22 47 47 H 1.07995 * 119.99816 * 179.97438 * 25 24 23 48 48 H 1.07996 * 120.00082 * 179.97438 * 26 25 24 49 49 H 1.08994 * 110.48877 * 93.88118 * 27 19 18 50 50 H 1.09001 * 110.48494 * 216.39194 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2865 3.4706 1.1871 7 1 4.0922 4.5296 1.2710 8 6 4.7676 2.7637 2.2823 9 7 5.4077 1.6300 2.1031 10 14 4.5045 3.4247 4.0096 11 1 3.2234 2.9028 4.5495 12 1 5.6239 2.9884 4.8823 13 1 4.4572 4.9084 3.9698 14 6 4.2835 3.4583 -1.1674 15 8 3.9962 2.9199 -2.2156 16 6 4.8922 4.8369 -1.1704 17 7 5.0641 5.2918 -2.5524 18 6 4.0530 6.0383 -3.3103 19 6 4.8101 6.6634 -4.5028 20 1 5.1538 7.6695 -4.2626 21 6 3.9526 6.6708 -5.7421 22 6 3.4844 5.4803 -6.2658 23 6 2.6941 5.4875 -7.3999 24 6 2.3800 6.6845 -8.0159 25 6 2.8522 7.8747 -7.4949 26 6 3.6390 7.8678 -6.3584 27 6 6.0038 5.6933 -4.6618 28 6 6.1703 5.0841 -3.2872 29 8 7.1573 4.4921 -2.9047 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9562 0.8900 37 1 3.9331 0.9286 0.8907 38 1 3.9338 0.9284 -0.8891 39 1 5.7611 1.1467 2.8662 40 1 4.2344 5.5256 -0.6403 41 1 5.8623 4.8069 -0.6745 42 1 3.2759 5.3632 -3.6689 43 1 3.6157 6.8193 -2.6882 44 1 3.7329 4.5448 -5.7866 45 1 2.3249 4.5576 -7.8067 46 1 1.7654 6.6899 -8.9039 47 1 2.6071 8.8098 -7.9764 48 1 4.0083 8.7976 -5.9516 49 1 5.7746 4.9239 -5.3990 50 1 6.9031 6.2387 -4.9480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180308899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:52 Heat of formation + Delta-G solvation = -65.868826 kcal Electronic energy + Delta-G solvation = -30385.435370 eV Core-core repulsion = 26376.469693 eV Total energy + Delta-G solvation = -4008.965677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80701 -40.40647 -39.77963 -37.54314 -37.09979 -35.59770 -34.49746 -33.46190 -31.77674 -31.35144 -30.16410 -28.48762 -27.86374 -26.80878 -24.50336 -24.03418 -23.29916 -22.03404 -21.36501 -21.30543 -20.52225 -18.91493 -18.30006 -17.78001 -17.49948 -16.99143 -16.63276 -16.35775 -16.14452 -16.01599 -15.73734 -15.62991 -15.55226 -14.74581 -14.67162 -14.52766 -14.42854 -14.14911 -13.89175 -13.79770 -13.72688 -13.64804 -13.49346 -13.11983 -13.04165 -12.95301 -12.69487 -12.44151 -12.30800 -12.13277 -12.06780 -12.00068 -11.92290 -11.83940 -11.70651 -11.46326 -11.09191 -10.94741 -10.68954 -9.76373 -9.61673 -9.56966 -9.50836 -8.31966 -6.08575 0.44264 0.56043 1.41023 1.47871 1.51050 1.59300 1.93074 2.01346 2.31606 2.87594 2.99281 3.07018 3.28219 3.65609 3.67751 3.99227 4.03040 4.09188 4.10359 4.23110 4.24596 4.26833 4.30011 4.34497 4.39808 4.49482 4.57277 4.60395 4.63818 4.68347 4.76215 4.78514 4.80429 4.85052 4.95636 5.03592 5.06592 5.15026 5.15944 5.23461 5.32312 5.38972 5.40909 5.46723 5.55574 5.63596 5.69209 5.75841 5.96536 6.14742 6.17694 6.38185 7.07792 7.12237 7.54272 7.97581 8.69766 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003005 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.837722 B = 9314.301397 C =10724.532329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.109 4.109 4 C 0.114 3.886 5 N -0.445 5.445 6 C -0.363 4.363 7 H 0.107 0.893 8 C 0.003 3.997 9 N -0.891 5.891 10 Si 0.986 3.014 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.252 1.252 14 C 0.436 3.564 15 O -0.630 6.630 16 C 0.135 3.865 17 N -0.598 5.598 18 C 0.109 3.891 19 C -0.041 4.041 20 H 0.133 0.867 21 C -0.080 4.080 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.134 4.134 28 C 0.503 3.497 29 O -0.591 6.591 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.022 0.978 39 H 0.273 0.727 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.126 0.874 46 H 0.141 0.859 47 H 0.148 0.852 48 H 0.150 0.850 49 H 0.102 0.898 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 13.338 -12.573 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.148 4.148 4 C -0.010 4.010 5 N -0.163 5.163 6 C -0.490 4.490 7 H 0.124 0.876 8 C -0.200 4.200 9 N -0.528 5.528 10 Si 0.809 3.191 11 H -0.197 1.197 12 H -0.214 1.214 13 H -0.175 1.175 14 C 0.225 3.775 15 O -0.518 6.518 16 C 0.009 3.991 17 N -0.329 5.329 18 C -0.013 4.013 19 C -0.059 4.059 20 H 0.151 0.849 21 C -0.080 4.080 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.173 4.173 28 C 0.293 3.707 29 O -0.472 6.472 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.040 0.960 39 H 0.082 0.918 40 H 0.142 0.858 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.144 0.856 46 H 0.158 0.842 47 H 0.166 0.834 48 H 0.168 0.832 49 H 0.120 0.880 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.115 12.588 -12.669 19.617 hybrid contribution 0.321 -0.827 1.051 1.376 sum -7.794 11.761 -11.617 18.276 Atomic orbital electron populations 1.21700 0.93864 1.02384 1.01867 1.21423 0.97347 0.95259 1.01498 1.21705 0.94997 0.97676 1.00412 1.21404 0.93689 0.84682 1.01207 1.43746 1.55299 1.12344 1.04924 1.19858 1.45449 0.96101 0.87568 0.87570 1.26283 0.93207 0.96360 1.04179 1.70038 1.31814 1.17941 1.33004 0.85044 0.77727 0.79629 0.76715 1.19657 1.21353 1.17538 1.21519 0.81813 0.90516 0.83690 1.90471 1.58358 1.70151 1.32787 1.20893 1.02473 0.93390 0.82339 1.48057 1.16896 1.54910 1.13060 1.22409 0.90427 0.95307 0.93175 1.21088 0.92678 1.00640 0.91526 0.84924 1.19539 0.98773 0.93790 0.95927 1.21118 0.98786 0.97863 0.97048 1.21331 0.98443 0.99319 0.95869 1.21472 1.00007 0.92347 1.00489 1.21494 0.97367 0.98968 0.96210 1.21339 0.98023 0.97527 0.95780 1.22457 1.01828 1.00286 0.92763 1.21705 0.81793 0.78395 0.88826 1.90678 1.34167 1.45034 1.77316 0.92903 0.92406 0.91086 0.92148 0.92807 0.94240 0.92399 0.88968 0.95971 0.91770 0.85751 0.89526 0.92366 0.87465 0.88032 0.85581 0.84150 0.83412 0.83246 0.87968 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.12 -4.03 5.93 30.60 0.18 -3.85 16 3 C -0.11 -4.61 5.54 30.59 0.17 -4.44 16 4 C 0.11 5.79 4.97 86.38 0.43 6.22 16 5 N -0.45 -23.23 2.54 -635.55 -1.61 -24.84 16 6 C -0.36 -18.17 8.64 84.04 0.73 -17.44 16 7 H 0.11 4.84 7.06 -2.91 -0.02 4.82 16 8 C 0.00 0.16 4.96 84.92 0.42 0.58 16 9 N -0.89 -48.36 11.33 21.66 0.25 -48.11 16 10 Si 0.99 38.76 29.61 68.60 2.03 40.79 16 11 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 12 H -0.29 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 14 C 0.44 22.33 7.69 87.66 0.67 23.01 16 15 O -0.63 -35.28 16.06 -3.06 -0.05 -35.32 16 16 C 0.13 5.64 5.14 85.63 0.44 6.08 16 17 N -0.60 -21.88 2.42 -822.34 -1.99 -23.87 16 18 C 0.11 2.87 6.84 86.83 0.59 3.46 16 19 C -0.04 -0.81 3.37 -10.48 -0.04 -0.85 16 20 H 0.13 1.80 7.96 -2.39 -0.02 1.78 16 21 C -0.08 -1.53 4.96 -19.86 -0.10 -1.63 16 22 C -0.13 -2.97 8.06 22.27 0.18 -2.79 16 23 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 25 C -0.12 -1.65 10.05 22.27 0.22 -1.42 16 26 C -0.11 -1.58 9.69 22.27 0.22 -1.36 16 27 C -0.13 -3.49 6.30 30.59 0.19 -3.30 16 28 C 0.50 19.63 8.02 87.90 0.70 20.34 16 29 O -0.59 -29.43 17.59 -3.04 -0.05 -29.48 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.09 4.96 5.36 -2.39 -0.01 4.95 16 38 H 0.02 1.21 7.50 -2.39 -0.02 1.19 16 39 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 40 H 0.12 4.31 7.59 -2.39 -0.02 4.29 16 41 H 0.09 3.99 7.90 -2.39 -0.02 3.97 16 42 H 0.06 1.78 7.17 -2.39 -0.02 1.76 16 43 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.10 2.77 7.32 -2.91 -0.02 2.75 16 45 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 47 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 48 H 0.15 1.34 7.99 -2.91 -0.02 1.31 16 49 H 0.10 2.76 6.63 -2.39 -0.02 2.75 16 50 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -75.25 409.29 5.67 -69.59 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.92 Total: 35.80 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.18 Total: 15.47 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -3.36 Total: -96.83 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: -0.10 Total: -64.81 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -75.25 5.67 -69.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180308899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.716 kcal (2) G-P(sol) polarization free energy of solvation -75.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds