Wall clock time and date at job start Sat Apr 11 2020 07:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47339 * 2 1 4 4 C 1.53001 * 109.47651 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47484 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99899 * 90.00050 * 5 4 3 7 7 H 1.08004 * 119.99752 * 302.89014 * 6 5 4 8 8 C 1.38949 * 119.99785 * 122.89358 * 6 5 4 9 9 N 1.31409 * 120.00432 * 339.19147 * 8 6 5 10 10 Si 1.86801 * 119.99637 * 159.19999 * 8 6 5 11 11 H 1.48502 * 109.47391 * 59.99940 * 10 8 6 12 12 H 1.48502 * 109.46960 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47327 * 299.99536 * 10 8 6 14 14 C 1.34775 * 120.00392 * 269.72259 * 5 4 3 15 15 O 1.21299 * 119.99489 * 3.95767 * 14 5 4 16 16 C 1.50697 * 120.00303 * 183.96036 * 14 5 4 17 17 H 1.08993 * 110.24499 * 46.20436 * 16 14 5 18 18 C 1.54374 * 110.27547 * 168.20995 * 16 14 5 19 19 N 1.48802 * 104.08482 * 142.27411 * 18 16 14 20 20 C 1.46901 * 111.01537 * 202.14888 * 19 18 16 21 21 C 1.50703 * 109.46753 * 45.07954 * 20 19 18 22 22 C 1.38231 * 119.99961 * 269.72088 * 21 20 19 23 23 C 1.38237 * 120.00204 * 179.76880 * 22 21 20 24 24 C 1.38238 * 119.99712 * 0.48609 * 23 22 21 25 25 C 1.38241 * 119.99836 * 359.79331 * 24 23 22 26 26 C 1.38230 * 120.00253 * 359.95112 * 25 24 23 27 27 C 1.48544 * 103.83271 * 321.49019 * 19 18 16 28 28 C 1.51841 * 110.27319 * 284.19486 * 16 14 5 29 29 O 1.20757 * 127.12676 * 61.38070 * 28 16 14 30 30 H 1.09005 * 109.46475 * 299.99712 * 1 2 3 31 31 H 1.09001 * 109.47425 * 59.99438 * 1 2 3 32 32 H 1.08999 * 109.47289 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46475 * 240.00288 * 2 1 3 34 34 H 1.09001 * 109.47425 * 120.00562 * 2 1 3 35 35 H 1.09005 * 109.47125 * 60.00116 * 3 2 1 36 36 H 1.09001 * 109.47321 * 300.00626 * 3 2 1 37 37 H 1.09005 * 109.47129 * 59.99668 * 4 3 2 38 38 H 1.09001 * 109.46902 * 300.00432 * 4 3 2 39 39 H 0.97003 * 120.00000 * 177.68234 * 9 8 6 40 40 H 1.09000 * 110.49472 * 261.00598 * 18 16 14 41 41 H 1.09003 * 110.49618 * 23.67157 * 18 16 14 42 42 H 1.09000 * 109.46635 * 165.07561 * 20 19 18 43 43 H 1.08995 * 109.47422 * 285.07645 * 20 19 18 44 44 H 1.08006 * 120.00193 * 359.97438 * 22 21 20 45 45 H 1.08001 * 120.00317 * 180.25008 * 23 22 21 46 46 H 1.08002 * 120.00146 * 179.76634 * 24 23 22 47 47 H 1.08001 * 119.99529 * 179.97438 * 25 24 23 48 48 H 1.07993 * 120.00354 * 180.02562 * 26 25 24 49 49 H 1.08996 * 110.35636 * 280.28814 * 27 19 18 50 50 H 1.09003 * 110.44523 * 158.04053 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2874 3.4692 1.1876 7 1 3.4905 3.5704 1.9096 8 6 5.5446 3.9933 1.4623 9 7 6.5987 3.5440 0.8190 10 14 5.7363 5.3365 2.7462 11 1 5.2612 4.8360 4.0611 12 1 7.1670 5.7206 2.8509 13 1 4.9334 6.5205 2.3477 14 6 4.2879 3.4578 -1.1669 15 8 4.0224 2.9112 -2.2166 16 6 4.8743 4.8460 -1.1674 17 1 5.7205 4.8982 -0.4825 18 6 5.3151 5.2400 -2.5934 19 7 4.9706 6.6842 -2.6929 20 6 4.8276 7.0962 -4.0957 21 6 4.0113 6.0708 -4.8396 22 6 4.6382 5.0080 -5.4627 23 6 3.8892 4.0648 -6.1411 24 6 2.5139 4.1899 -6.2048 25 6 1.8875 5.2560 -5.5866 26 6 2.6361 6.1962 -4.9038 27 6 3.6762 6.7910 -1.9720 28 6 3.8174 5.8638 -0.7766 29 8 3.2140 5.9236 0.2677 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9331 0.9287 -0.8909 38 1 3.9338 0.9285 0.8891 39 1 7.4714 3.9330 0.9864 40 1 6.3882 5.0928 -2.7155 41 1 4.7630 4.6643 -3.3363 42 1 4.3256 8.0627 -4.1410 43 1 5.8136 7.1771 -4.5530 44 1 5.7131 4.9127 -5.4167 45 1 4.3786 3.2323 -6.6244 46 1 1.9289 3.4551 -6.7380 47 1 0.8131 5.3539 -5.6368 48 1 2.1467 7.0288 -4.4205 49 1 2.8575 6.4624 -2.6121 50 1 3.5090 7.8156 -1.6396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181567831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:10 Heat of formation + Delta-G solvation = -29.093035 kcal Electronic energy + Delta-G solvation = -32170.016380 eV Core-core repulsion = 28162.645421 eV Total energy + Delta-G solvation = -4007.370959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.34438 -39.02554 -37.82491 -36.62766 -35.26262 -34.13359 -32.31999 -31.62980 -30.88339 -29.66890 -28.27093 -27.68092 -25.28300 -24.78405 -23.08137 -22.46335 -21.69695 -20.64113 -20.30785 -19.95450 -18.85585 -17.06767 -16.76436 -15.91552 -15.56145 -15.28874 -15.16610 -15.05729 -14.84871 -14.69960 -14.16550 -14.01581 -13.82498 -13.45641 -13.37609 -13.32534 -13.17047 -12.67058 -12.52363 -12.37081 -12.16426 -12.11059 -11.92761 -11.59076 -11.31900 -11.31756 -11.22187 -11.09620 -11.00949 -10.83036 -10.68784 -10.65843 -10.53956 -10.47466 -10.30690 -9.87488 -9.04927 -8.75013 -8.61704 -8.46895 -8.36075 -8.29981 -7.29328 -6.39859 -4.23179 1.45931 1.54561 2.60231 3.18858 3.26227 3.36517 3.83924 3.92230 4.17192 4.30918 4.68706 4.79930 4.86071 4.89716 4.95481 5.11104 5.17760 5.23110 5.32460 5.37436 5.46072 5.54864 5.57922 5.61147 5.70924 5.74903 5.80777 5.92312 5.99032 6.10112 6.11913 6.13939 6.15638 6.23427 6.27156 6.34850 6.43505 6.46393 6.53960 6.56003 6.60359 6.64556 6.67433 6.87024 6.91329 6.97717 7.05389 7.13058 7.16795 7.47608 7.99970 8.20237 8.61575 8.92528 9.50835 9.94349 10.62089 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008600 B = 0.005415 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.852291 B = 5169.570296 C = 7270.243051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.128 4.128 4 C 0.117 3.883 5 N -0.444 5.444 6 C -0.322 4.322 7 H 0.081 0.919 8 C 0.051 3.949 9 N -0.862 5.862 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.261 1.261 14 C 0.527 3.473 15 O -0.598 6.598 16 C -0.166 4.166 17 H 0.153 0.847 18 C 0.030 3.970 19 N -0.491 5.491 20 C 0.081 3.919 21 C -0.120 4.120 22 C -0.096 4.096 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.035 4.035 28 C 0.383 3.617 29 O -0.408 6.408 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.271 0.729 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.118 0.882 49 H 0.083 0.917 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.135 3.331 -9.998 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.006 4.006 5 N -0.162 5.162 6 C -0.450 4.450 7 H 0.099 0.901 8 C -0.154 4.154 9 N -0.498 5.498 10 Si 0.722 3.278 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.185 1.185 14 C 0.315 3.685 15 O -0.484 6.484 16 C -0.188 4.188 17 H 0.170 0.830 18 C -0.097 4.097 19 N -0.214 5.214 20 C -0.047 4.047 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.133 4.133 27 C -0.164 4.164 28 C 0.254 3.746 29 O -0.277 6.277 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.101 0.899 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.955 3.431 -9.628 11.359 hybrid contribution -0.220 0.064 0.347 0.416 sum -5.175 3.495 -9.281 11.186 Atomic orbital electron populations 1.21753 0.96493 1.00756 1.01594 1.21453 0.95225 0.97579 1.01564 1.21899 0.97325 0.95616 1.01804 1.21400 0.92370 0.85803 1.01027 1.43202 1.58376 1.09642 1.05021 1.19137 0.95288 1.34036 0.96550 0.90100 1.25501 0.94915 0.97820 0.97184 1.70058 0.98953 1.37924 1.42895 0.86468 0.77206 0.82743 0.81424 1.19551 1.20987 1.18509 1.19558 0.79028 0.86229 0.83651 1.90511 1.57338 1.68499 1.32012 1.22764 1.02212 0.94677 0.99129 0.83000 1.23409 1.02073 0.87182 0.97064 1.65966 1.24728 1.20039 1.10623 1.21417 0.99577 0.96216 0.87496 1.20514 0.94669 0.98142 0.98859 1.21034 0.99935 0.94111 0.96443 1.21096 0.94168 0.98572 0.99189 1.21098 0.94837 0.97763 0.99781 1.21071 0.99539 0.95070 0.98201 1.21015 0.93445 0.99530 0.99331 1.23715 0.93642 1.01786 0.97278 1.24390 0.80239 0.83742 0.86251 1.90406 1.42792 1.69227 1.25227 0.92974 0.93046 0.93337 0.92331 0.92264 0.92201 0.92492 0.92321 0.91636 0.91891 0.89852 0.89164 0.89924 0.89307 0.86095 0.86224 0.86441 0.86422 0.86411 0.89928 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.86 5.93 -26.73 -0.16 -2.02 16 3 C -0.13 -2.47 5.54 -26.73 -0.15 -2.62 16 4 C 0.12 2.62 5.35 -4.05 -0.02 2.60 16 5 N -0.44 -11.21 2.38 -114.81 -0.27 -11.48 16 6 C -0.32 -8.37 6.98 -14.93 -0.10 -8.47 16 7 H 0.08 2.14 7.91 -52.48 -0.42 1.73 16 8 C 0.05 1.30 3.38 -17.47 -0.06 1.24 16 9 N -0.86 -22.73 11.80 55.50 0.66 -22.07 16 10 Si 0.90 20.51 29.41 -169.99 -5.00 15.51 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 14 C 0.53 13.29 6.56 -10.99 -0.07 13.22 16 15 O -0.60 -15.65 15.04 5.54 0.08 -15.56 16 16 C -0.17 -3.78 2.40 -91.64 -0.22 -4.00 16 17 H 0.15 3.79 4.47 -51.93 -0.23 3.56 16 18 C 0.03 0.57 5.48 -2.05 -0.01 0.56 16 19 N -0.49 -8.00 5.68 -232.76 -1.32 -9.33 16 20 C 0.08 1.05 5.77 -4.97 -0.03 1.02 16 21 C -0.12 -1.67 3.83 -104.62 -0.40 -2.07 16 22 C -0.10 -1.36 7.51 -39.58 -0.30 -1.66 16 23 C -0.11 -1.54 10.05 -39.58 -0.40 -1.94 16 24 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 26 C -0.11 -1.53 8.04 -39.58 -0.32 -1.85 16 27 C -0.04 -0.60 6.22 -3.45 -0.02 -0.62 16 28 C 0.38 8.29 7.22 -27.85 -0.20 8.09 16 29 O -0.41 -9.74 16.15 6.00 0.10 -9.64 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.35 7.47 -51.93 -0.39 0.96 16 38 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 39 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.09 1.81 3.37 -51.93 -0.17 1.63 16 42 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 43 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 44 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 47 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.12 1.37 7.49 -52.49 -0.39 0.98 16 49 H 0.08 1.35 5.20 -51.93 -0.27 1.08 16 50 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -29.91 395.94 -10.44 -40.35 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.76 Total: 10.29 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.89 Total: -4.03 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.94 Total: -42.89 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.18 Total: -25.20 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.00 Total: 15.51 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.91 -10.44 -40.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181567831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.256 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds