Wall clock time and date at job start Sat Apr 11 2020 07:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47339 * 2 1 4 4 C 1.53001 * 109.47651 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47484 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99899 * 90.00050 * 5 4 3 7 7 H 1.08004 * 119.99752 * 302.89014 * 6 5 4 8 8 C 1.38949 * 119.99785 * 122.89358 * 6 5 4 9 9 N 1.31409 * 120.00432 * 339.19147 * 8 6 5 10 10 Si 1.86801 * 119.99637 * 159.19999 * 8 6 5 11 11 H 1.48502 * 109.47391 * 59.99940 * 10 8 6 12 12 H 1.48502 * 109.46960 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47327 * 299.99536 * 10 8 6 14 14 C 1.34775 * 120.00392 * 269.72259 * 5 4 3 15 15 O 1.21299 * 119.99489 * 3.95767 * 14 5 4 16 16 C 1.50697 * 120.00303 * 183.96036 * 14 5 4 17 17 H 1.08993 * 110.24499 * 46.20436 * 16 14 5 18 18 C 1.54374 * 110.27547 * 168.20995 * 16 14 5 19 19 N 1.48802 * 104.08482 * 142.27411 * 18 16 14 20 20 C 1.46901 * 111.01537 * 202.14888 * 19 18 16 21 21 C 1.50703 * 109.46753 * 45.07954 * 20 19 18 22 22 C 1.38231 * 119.99961 * 269.72088 * 21 20 19 23 23 C 1.38237 * 120.00204 * 179.76880 * 22 21 20 24 24 C 1.38238 * 119.99712 * 0.48609 * 23 22 21 25 25 C 1.38241 * 119.99836 * 359.79331 * 24 23 22 26 26 C 1.38230 * 120.00253 * 359.95112 * 25 24 23 27 27 C 1.48544 * 103.83271 * 321.49019 * 19 18 16 28 28 C 1.51841 * 110.27319 * 284.19486 * 16 14 5 29 29 O 1.20757 * 127.12676 * 61.38070 * 28 16 14 30 30 H 1.09005 * 109.46475 * 299.99712 * 1 2 3 31 31 H 1.09001 * 109.47425 * 59.99438 * 1 2 3 32 32 H 1.08999 * 109.47289 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46475 * 240.00288 * 2 1 3 34 34 H 1.09001 * 109.47425 * 120.00562 * 2 1 3 35 35 H 1.09005 * 109.47125 * 60.00116 * 3 2 1 36 36 H 1.09001 * 109.47321 * 300.00626 * 3 2 1 37 37 H 1.09005 * 109.47129 * 59.99668 * 4 3 2 38 38 H 1.09001 * 109.46902 * 300.00432 * 4 3 2 39 39 H 0.97003 * 120.00000 * 177.68234 * 9 8 6 40 40 H 1.09000 * 110.49472 * 261.00598 * 18 16 14 41 41 H 1.09003 * 110.49618 * 23.67157 * 18 16 14 42 42 H 1.09000 * 109.46635 * 165.07561 * 20 19 18 43 43 H 1.08995 * 109.47422 * 285.07645 * 20 19 18 44 44 H 1.08006 * 120.00193 * 359.97438 * 22 21 20 45 45 H 1.08001 * 120.00317 * 180.25008 * 23 22 21 46 46 H 1.08002 * 120.00146 * 179.76634 * 24 23 22 47 47 H 1.08001 * 119.99529 * 179.97438 * 25 24 23 48 48 H 1.07993 * 120.00354 * 180.02562 * 26 25 24 49 49 H 1.08996 * 110.35636 * 280.28814 * 27 19 18 50 50 H 1.09003 * 110.44523 * 158.04053 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2874 3.4692 1.1876 7 1 3.4905 3.5704 1.9096 8 6 5.5446 3.9933 1.4623 9 7 6.5987 3.5440 0.8190 10 14 5.7363 5.3365 2.7462 11 1 5.2612 4.8360 4.0611 12 1 7.1670 5.7206 2.8509 13 1 4.9334 6.5205 2.3477 14 6 4.2879 3.4578 -1.1669 15 8 4.0224 2.9112 -2.2166 16 6 4.8743 4.8460 -1.1674 17 1 5.7205 4.8982 -0.4825 18 6 5.3151 5.2400 -2.5934 19 7 4.9706 6.6842 -2.6929 20 6 4.8276 7.0962 -4.0957 21 6 4.0113 6.0708 -4.8396 22 6 4.6382 5.0080 -5.4627 23 6 3.8892 4.0648 -6.1411 24 6 2.5139 4.1899 -6.2048 25 6 1.8875 5.2560 -5.5866 26 6 2.6361 6.1962 -4.9038 27 6 3.6762 6.7910 -1.9720 28 6 3.8174 5.8638 -0.7766 29 8 3.2140 5.9236 0.2677 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9331 0.9287 -0.8909 38 1 3.9338 0.9285 0.8891 39 1 7.4714 3.9330 0.9864 40 1 6.3882 5.0928 -2.7155 41 1 4.7630 4.6643 -3.3363 42 1 4.3256 8.0627 -4.1410 43 1 5.8136 7.1771 -4.5530 44 1 5.7131 4.9127 -5.4167 45 1 4.3786 3.2323 -6.6244 46 1 1.9289 3.4551 -6.7380 47 1 0.8131 5.3539 -5.6368 48 1 2.1467 7.0288 -4.4205 49 1 2.8575 6.4624 -2.6121 50 1 3.5090 7.8156 -1.6396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181567831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:08 Heat of formation + Delta-G solvation = -45.709253 kcal Electronic energy + Delta-G solvation = -32170.736913 eV Core-core repulsion = 28162.645421 eV Total energy + Delta-G solvation = -4008.091492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.84231 -40.39979 -39.56316 -38.04971 -36.99029 -35.84559 -33.76665 -33.30110 -31.90602 -31.09244 -29.77808 -29.05369 -26.89567 -26.44712 -24.55068 -23.51687 -22.98749 -22.04719 -21.74393 -21.53444 -20.66197 -18.86588 -17.89207 -17.54830 -17.18273 -16.94911 -16.85679 -16.29364 -16.18514 -16.01365 -15.84026 -15.56274 -15.34364 -14.94403 -14.88140 -14.61487 -14.27806 -14.18823 -14.05848 -13.90480 -13.57137 -13.40208 -13.29049 -13.24329 -13.06884 -12.97140 -12.75509 -12.41668 -12.30833 -12.23523 -12.18208 -12.07667 -12.01272 -11.91260 -11.81507 -11.46629 -10.89991 -10.35284 -10.25999 -9.78081 -9.62931 -9.58154 -9.26060 -8.38244 -6.27011 0.43620 0.52468 0.91420 1.34194 1.41080 1.51435 1.97319 2.28757 2.77999 2.89604 2.93087 3.10455 3.20904 3.69813 3.84515 3.89924 3.99380 4.01246 4.07237 4.15209 4.23125 4.25793 4.30931 4.35293 4.43453 4.51239 4.56210 4.62932 4.67828 4.69164 4.80287 4.81135 4.87521 4.93850 4.95121 4.95255 5.08567 5.13396 5.14550 5.16476 5.27620 5.35824 5.44041 5.45359 5.46593 5.55469 5.64242 5.74205 5.86839 6.04386 6.14446 6.52756 6.60309 6.92819 7.53677 7.97391 8.64146 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008600 B = 0.005415 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.852291 B = 5169.570296 C = 7270.243051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.113 4.113 4 C 0.114 3.886 5 N -0.456 5.456 6 C -0.332 4.332 7 H 0.070 0.930 8 C 0.028 3.972 9 N -0.884 5.884 10 Si 0.942 3.058 11 H -0.264 1.264 12 H -0.275 1.275 13 H -0.268 1.268 14 C 0.515 3.485 15 O -0.617 6.617 16 C -0.174 4.174 17 H 0.132 0.868 18 C 0.040 3.960 19 N -0.487 5.487 20 C 0.081 3.919 21 C -0.130 4.130 22 C -0.113 4.113 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.131 4.131 26 C -0.124 4.124 27 C -0.022 4.022 28 C 0.374 3.626 29 O -0.438 6.438 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.036 0.964 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.275 0.725 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.094 0.906 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 4.427 -10.438 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.152 4.152 4 C -0.009 4.009 5 N -0.174 5.174 6 C -0.460 4.460 7 H 0.088 0.912 8 C -0.175 4.175 9 N -0.521 5.521 10 Si 0.766 3.234 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.193 1.193 14 C 0.304 3.696 15 O -0.504 6.504 16 C -0.196 4.196 17 H 0.149 0.851 18 C -0.087 4.087 19 N -0.210 5.210 20 C -0.046 4.046 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.150 4.150 28 C 0.247 3.753 29 O -0.309 6.309 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.153 0.847 47 H 0.156 0.844 48 H 0.155 0.845 49 H 0.112 0.888 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.850 4.520 -10.075 12.496 hybrid contribution 0.061 -0.343 0.436 0.559 sum -5.789 4.177 -9.638 11.994 Atomic orbital electron populations 1.21720 0.94463 1.02403 1.01595 1.21428 0.96953 0.94654 1.02245 1.21746 0.94945 0.98178 1.00317 1.21514 0.94415 0.84683 1.00323 1.43433 1.58400 1.10524 1.05025 1.19099 0.95279 1.35004 0.96662 0.91195 1.25965 0.94397 0.98684 0.98458 1.70100 0.99347 1.38713 1.43964 0.85764 0.77412 0.80363 0.79860 1.18826 1.19952 1.19329 1.20043 0.78890 0.87255 0.83367 1.90477 1.58265 1.69245 1.32406 1.22782 1.01926 0.93928 1.00933 0.85143 1.23232 1.01800 0.89115 0.94584 1.66008 1.24400 1.17592 1.12996 1.21583 1.00827 0.96984 0.85163 1.20643 0.95129 0.98255 0.99140 1.21237 1.00375 0.94627 0.96970 1.21375 0.94807 0.99061 0.99574 1.21425 0.94913 0.98383 0.99896 1.21424 1.00798 0.94862 0.97819 1.21328 0.93430 1.00196 0.99318 1.23686 0.94276 1.02024 0.95057 1.24907 0.79212 0.84123 0.87085 1.90378 1.43608 1.70069 1.26809 0.92756 0.93316 0.90858 0.92080 0.91163 0.92980 0.94478 0.93493 0.91649 0.91565 0.89962 0.89801 0.87100 0.87855 0.85794 0.85243 0.84668 0.84368 0.84503 0.88849 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.11 -3.45 5.93 30.59 0.18 -3.27 16 3 C -0.11 -4.44 5.54 30.59 0.17 -4.27 16 4 C 0.11 5.22 5.35 86.38 0.46 5.68 16 5 N -0.46 -23.65 2.38 -635.54 -1.51 -25.16 16 6 C -0.33 -17.65 6.98 84.04 0.59 -17.06 16 7 H 0.07 3.81 7.91 -2.91 -0.02 3.78 16 8 C 0.03 1.47 3.38 84.93 0.29 1.76 16 9 N -0.88 -47.29 11.80 21.66 0.26 -47.03 16 10 Si 0.94 42.08 29.41 68.60 2.02 44.10 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 14 C 0.52 26.61 6.56 87.66 0.57 27.19 16 15 O -0.62 -33.07 15.04 -3.09 -0.05 -33.12 16 16 C -0.17 -7.98 2.40 -11.46 -0.03 -8.01 16 17 H 0.13 6.63 4.47 -2.39 -0.01 6.62 16 18 C 0.04 1.54 5.48 86.40 0.47 2.01 16 19 N -0.49 -14.88 5.68 -890.33 -5.06 -19.94 16 20 C 0.08 1.88 5.77 85.56 0.49 2.37 16 21 C -0.13 -3.37 3.83 -19.86 -0.08 -3.45 16 22 C -0.11 -3.12 7.51 22.27 0.17 -2.95 16 23 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 24 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 25 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 26 C -0.12 -3.05 8.04 22.27 0.18 -2.87 16 27 C -0.02 -0.70 6.22 85.64 0.53 -0.16 16 28 C 0.37 16.04 7.22 29.87 0.22 16.25 16 29 O -0.44 -20.96 16.15 -1.44 -0.02 -20.98 16 30 H 0.05 1.32 8.14 -2.38 -0.02 1.31 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 2.23 7.47 -2.38 -0.02 2.21 16 38 H 0.07 2.94 8.04 -2.39 -0.02 2.92 16 39 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 40 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.08 3.35 3.37 -2.39 -0.01 3.34 16 42 H 0.11 1.97 8.03 -2.39 -0.02 1.95 16 43 H 0.10 2.11 8.08 -2.39 -0.02 2.09 16 44 H 0.12 3.19 8.06 -2.91 -0.02 3.16 16 45 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 46 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 47 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 48 H 0.14 2.74 7.49 -2.91 -0.02 2.72 16 49 H 0.09 2.81 5.20 -2.39 -0.01 2.80 16 50 H 0.13 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -65.58 395.94 2.17 -63.41 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.93 Total: 37.67 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.60 Total: 1.05 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -6.32 Total: -92.13 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.07 Total: -54.10 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.02 Total: 44.10 kcal Total: -65.58 2.17 -63.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181567831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.703 kcal (2) G-P(sol) polarization free energy of solvation -65.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds