Wall clock time and date at job start Sat Apr 11 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46882 * 2 1 4 4 N 1.46496 * 109.47272 * 240.00231 * 2 1 3 5 5 C 1.36941 * 120.00460 * 84.99623 * 4 2 1 6 6 H 1.08008 * 119.99359 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00217 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99821 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47210 * 90.00062 * 9 7 5 11 11 H 1.48502 * 109.47030 * 210.00372 * 9 7 5 12 12 H 1.48502 * 109.47132 * 330.00186 * 9 7 5 13 13 C 1.52997 * 109.47583 * 119.99639 * 2 1 3 14 14 C 1.53042 * 109.46127 * 300.00657 * 13 2 1 15 15 C 1.53191 * 109.31092 * 178.62480 * 14 13 2 16 16 N 1.46920 * 108.77832 * 54.63306 * 15 14 13 17 17 C 1.34779 * 120.63433 * 126.36758 * 16 15 14 18 18 O 1.21598 * 119.99542 * 4.14270 * 17 16 15 19 19 C 1.47528 * 120.00602 * 184.14338 * 17 16 15 20 20 C 1.39529 * 120.04868 * 305.89521 * 19 17 16 21 21 C 1.37789 * 120.18881 * 180.26726 * 20 19 17 22 22 C 1.38649 * 119.96889 * 359.63804 * 21 20 19 23 23 C 1.37651 * 120.32166 * 0.02562 * 22 21 20 24 24 C 1.38886 * 120.88006 * 0.29235 * 23 22 21 25 25 O 1.35851 * 111.32637 * 179.50406 * 24 23 22 26 26 C 1.43764 * 109.32228 * 18.61432 * 25 24 23 27 27 C 1.51675 * 132.13822 * 180.48081 * 23 22 21 28 28 C 1.46922 * 118.73870 * 306.64439 * 16 15 14 29 29 C 1.52764 * 109.01184 * 53.30557 * 28 16 15 30 30 H 1.09003 * 109.46431 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47021 * 299.99623 * 1 2 3 32 32 H 1.08994 * 109.47479 * 60.00345 * 1 2 3 33 33 H 0.97008 * 120.00244 * 264.99457 * 4 2 1 34 34 H 0.97005 * 119.99480 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.45664 * 59.97507 * 13 2 1 36 36 H 1.09000 * 109.49528 * 58.66968 * 14 13 2 37 37 H 1.09001 * 109.52269 * 298.59022 * 14 13 2 38 38 H 1.09000 * 109.58829 * 294.84449 * 15 14 13 39 39 H 1.09001 * 109.70189 * 174.48945 * 15 14 13 40 40 H 1.07997 * 119.90576 * 0.08318 * 20 19 17 41 41 H 1.07994 * 120.01470 * 179.61488 * 21 20 19 42 42 H 1.08000 * 119.83861 * 179.97438 * 22 21 20 43 43 H 1.08998 * 110.74981 * 90.77799 * 26 25 24 44 44 H 1.08992 * 110.75181 * 213.95106 * 26 25 24 45 45 H 1.09006 * 110.94673 * 46.02490 * 27 23 22 46 46 H 1.08997 * 110.97864 * 282.33246 * 27 23 22 47 47 H 1.09003 * 109.58711 * 173.14645 * 28 16 15 48 48 H 1.09006 * 109.58580 * 293.56715 * 28 16 15 49 49 H 1.08993 * 109.56387 * 185.55442 * 29 28 16 50 50 H 1.08999 * 109.37926 * 65.51619 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8925 1.0406 -2.4241 7 6 2.6123 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4499 9 14 2.7900 0.2700 -5.1183 10 1 4.1518 0.8562 -5.2032 11 1 2.5803 -0.6617 -6.2555 12 1 1.7791 1.3564 -5.1756 13 6 2.0401 -0.7211 1.2492 14 6 1.5297 0.0004 2.4986 15 6 2.0139 -0.7440 3.7469 16 7 3.4756 -0.8766 3.6813 17 6 4.2497 -0.4569 4.7017 18 8 3.7367 -0.0327 5.7194 19 6 5.7192 -0.5121 4.5842 20 6 6.3489 -1.7120 4.2515 21 6 7.7216 -1.7682 4.1463 22 6 8.4802 -0.6282 4.3640 23 6 7.8688 0.5623 4.6859 24 6 6.4875 0.6450 4.8047 25 8 6.0946 1.9022 5.1377 26 6 7.1546 2.8265 4.8394 27 6 8.4212 1.9470 4.9654 28 6 4.0780 -1.4696 2.4797 29 6 3.5704 -0.7222 1.2479 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 2.2491 -1.6317 -1.1526 34 1 3.2488 -2.3959 -4.2420 35 1 1.6763 -1.7486 1.2493 36 1 0.4400 0.0212 2.4871 37 1 1.9130 1.0208 2.5121 38 1 1.5585 -1.7337 3.7817 39 1 1.7375 -0.1830 4.6396 40 1 5.7589 -2.5999 4.0789 41 1 8.2065 -2.6998 3.8948 42 1 9.5560 -0.6747 4.2814 43 1 7.0539 3.2156 3.8262 44 1 7.1725 3.6404 5.5640 45 1 9.1659 2.2272 4.2204 46 1 8.8376 2.0053 5.9710 47 1 5.1633 -1.3851 2.5353 48 1 3.7944 -2.5198 2.4090 49 1 3.9332 -1.2157 0.3463 50 1 3.9350 0.3048 1.2723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493836051.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:47 Heat of formation + Delta-G solvation = -28.258967 kcal Electronic energy + Delta-G solvation = -30844.702671 eV Core-core repulsion = 26837.367880 eV Total energy + Delta-G solvation = -4007.334791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51217 -40.01978 -37.93995 -37.41262 -35.35053 -33.29552 -32.69996 -31.22558 -30.74913 -30.27326 -29.47414 -28.20397 -25.59522 -24.36589 -23.67841 -23.09278 -22.52699 -22.17075 -20.92490 -19.71320 -19.12508 -17.67114 -17.40935 -16.97046 -16.77367 -16.47730 -15.78356 -15.37920 -15.11263 -14.78616 -14.12631 -13.98059 -13.89049 -13.81251 -13.62116 -13.44812 -13.36613 -13.12665 -12.91052 -12.55293 -12.54040 -12.20913 -12.14711 -12.08585 -11.95333 -11.58629 -11.50481 -11.14124 -11.11750 -10.94271 -10.85304 -10.70093 -10.24680 -10.21449 -10.14108 -9.84399 -9.71074 -9.56309 -9.06811 -8.89401 -8.54085 -8.38830 -6.93374 -5.76130 -3.03583 0.77440 1.04930 2.65503 2.94935 3.02843 3.42820 3.45923 3.48728 3.49800 4.07278 4.22461 4.39772 4.59058 4.64206 4.69484 4.87101 4.95227 5.04655 5.05154 5.11311 5.14029 5.19300 5.29994 5.36787 5.40635 5.44239 5.55311 5.59658 5.62731 5.72139 5.83361 5.94045 5.96664 5.98741 5.99834 6.08023 6.12716 6.15475 6.26777 6.28779 6.35981 6.47337 6.52363 6.60644 6.69859 6.82748 6.86614 6.97398 7.15762 7.44159 7.71460 8.19098 8.43121 9.54322 10.12852 10.47887 11.46647 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.002985 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.467586 B = 9378.082374 C =10388.470341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.234 4.234 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.089 4.089 14 C -0.128 4.128 15 C 0.114 3.886 16 N -0.601 5.601 17 C 0.565 3.435 18 O -0.537 6.537 19 C -0.144 4.144 20 C -0.055 4.055 21 C -0.151 4.151 22 C -0.052 4.052 23 C -0.182 4.182 24 C 0.155 3.845 25 O -0.290 6.290 26 C 0.047 3.953 27 C -0.108 4.108 28 C 0.098 3.902 29 C -0.122 4.122 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.092 0.908 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 2.657 18.465 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.365 4.365 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.109 4.109 14 C -0.166 4.166 15 C -0.008 4.008 16 N -0.333 5.333 17 C 0.353 3.647 18 O -0.415 6.415 19 C -0.147 4.147 20 C -0.074 4.074 21 C -0.169 4.169 22 C -0.070 4.070 23 C -0.183 4.183 24 C 0.107 3.893 25 O -0.203 6.203 26 C -0.028 4.028 27 C -0.145 4.145 28 C -0.024 4.024 29 C -0.160 4.160 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.099 0.901 44 H 0.127 0.873 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.111 0.889 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.051 3.107 18.947 21.671 hybrid contribution 0.331 0.190 -1.187 1.247 sum 10.382 3.297 17.759 20.834 Atomic orbital electron populations 1.22489 0.99528 1.00742 0.99840 1.20213 0.91584 0.95305 0.86084 0.93799 1.42411 1.78087 1.10607 1.05285 1.19232 1.36054 0.93784 0.87422 0.91381 1.24690 1.02427 0.95944 0.97902 1.69652 1.51236 1.08591 1.28798 0.86244 0.77737 0.78627 0.83923 1.21838 1.21853 1.20869 1.21376 0.94974 0.99898 0.94618 1.22017 1.01139 0.99662 0.93826 1.21644 0.78778 1.00847 0.99571 1.48081 1.07115 1.60737 1.17407 1.18117 0.86188 0.77298 0.83135 1.90776 1.74787 1.46631 1.29270 1.19046 0.93167 0.92845 1.09669 1.21071 0.95096 0.95834 0.95388 1.20974 0.93325 0.98698 1.03935 1.20444 1.00138 0.90631 0.95758 1.20753 0.93125 0.96700 1.07709 1.19359 0.91738 0.85731 0.92422 1.86905 1.41154 1.13959 1.78258 1.23933 0.83894 0.92257 1.02707 1.21805 0.98525 0.90501 1.03673 1.22031 0.98749 0.97282 0.84376 1.21806 0.96021 1.01012 0.97186 0.93590 0.94290 0.93059 0.78347 0.93624 0.91358 0.90325 0.91721 0.91500 0.89348 0.84401 0.84638 0.85332 0.90106 0.87328 0.88733 0.88993 0.89489 0.91132 0.88914 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.14 37.16 0.34 -2.61 16 2 C 0.18 3.41 2.47 -67.93 -0.17 3.25 16 3 H 0.04 0.89 8.08 -51.92 -0.42 0.47 16 4 N -0.72 -17.30 4.41 -53.42 -0.24 -17.54 16 5 C -0.23 -6.32 9.93 -15.06 -0.15 -6.47 16 6 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 9 Si 0.90 22.14 29.55 -169.99 -5.02 17.11 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C -0.09 -1.40 1.79 -90.58 -0.16 -1.56 16 14 C -0.13 -1.75 5.05 -26.61 -0.13 -1.89 16 15 C 0.11 1.52 6.42 -3.71 -0.02 1.49 16 16 N -0.60 -8.45 2.98 -174.26 -0.52 -8.97 16 17 C 0.56 8.92 7.15 -12.47 -0.09 8.83 16 18 O -0.54 -10.22 16.51 5.28 0.09 -10.13 16 19 C -0.14 -1.97 4.90 -104.72 -0.51 -2.48 16 20 C -0.06 -0.59 7.40 -39.26 -0.29 -0.88 16 21 C -0.15 -1.34 10.05 -39.59 -0.40 -1.74 16 22 C -0.05 -0.46 10.02 -39.64 -0.40 -0.85 16 23 C -0.18 -1.90 6.27 -104.12 -0.65 -2.55 16 24 C 0.15 2.09 6.78 -38.44 -0.26 1.83 16 25 O -0.29 -4.04 11.04 -19.27 -0.21 -4.25 16 26 C 0.05 0.41 8.01 38.06 0.30 0.72 16 27 C -0.11 -0.81 7.12 -26.50 -0.19 -1.00 16 28 C 0.10 1.27 5.48 -3.93 -0.02 1.25 16 29 C -0.12 -1.90 5.21 -26.83 -0.14 -2.04 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.38 9.69 7.58 -40.82 -0.31 9.38 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.99 6.36 -51.93 -0.33 0.66 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.25 7.03 -51.93 -0.36 0.88 16 40 H 0.14 1.25 7.35 -52.49 -0.39 0.86 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.05 4.74 -51.93 -0.25 0.81 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.09 1.66 7.40 -51.93 -0.38 1.28 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -33.67 394.31 -10.09 -43.76 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.81 Total: 8.04 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.04 Total: -7.22 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.03 Total: -53.25 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.13 Total: -14.39 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.67 -10.09 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493836051.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.505 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds