Wall clock time and date at job start Sat Apr 11 2020 07:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46882 * 2 1 4 4 N 1.46496 * 109.47272 * 240.00231 * 2 1 3 5 5 C 1.36941 * 120.00460 * 84.99623 * 4 2 1 6 6 H 1.08008 * 119.99359 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00217 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99821 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47210 * 90.00062 * 9 7 5 11 11 H 1.48502 * 109.47030 * 210.00372 * 9 7 5 12 12 H 1.48502 * 109.47132 * 330.00186 * 9 7 5 13 13 C 1.52997 * 109.47583 * 119.99639 * 2 1 3 14 14 C 1.53042 * 109.46127 * 300.00657 * 13 2 1 15 15 C 1.53191 * 109.31092 * 178.62480 * 14 13 2 16 16 N 1.46920 * 108.77832 * 54.63306 * 15 14 13 17 17 C 1.34779 * 120.63433 * 126.36758 * 16 15 14 18 18 O 1.21598 * 119.99542 * 4.14270 * 17 16 15 19 19 C 1.47528 * 120.00602 * 184.14338 * 17 16 15 20 20 C 1.39529 * 120.04868 * 305.89521 * 19 17 16 21 21 C 1.37789 * 120.18881 * 180.26726 * 20 19 17 22 22 C 1.38649 * 119.96889 * 359.63804 * 21 20 19 23 23 C 1.37651 * 120.32166 * 0.02562 * 22 21 20 24 24 C 1.38886 * 120.88006 * 0.29235 * 23 22 21 25 25 O 1.35851 * 111.32637 * 179.50406 * 24 23 22 26 26 C 1.43764 * 109.32228 * 18.61432 * 25 24 23 27 27 C 1.51675 * 132.13822 * 180.48081 * 23 22 21 28 28 C 1.46922 * 118.73870 * 306.64439 * 16 15 14 29 29 C 1.52764 * 109.01184 * 53.30557 * 28 16 15 30 30 H 1.09003 * 109.46431 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47021 * 299.99623 * 1 2 3 32 32 H 1.08994 * 109.47479 * 60.00345 * 1 2 3 33 33 H 0.97008 * 120.00244 * 264.99457 * 4 2 1 34 34 H 0.97005 * 119.99480 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.45664 * 59.97507 * 13 2 1 36 36 H 1.09000 * 109.49528 * 58.66968 * 14 13 2 37 37 H 1.09001 * 109.52269 * 298.59022 * 14 13 2 38 38 H 1.09000 * 109.58829 * 294.84449 * 15 14 13 39 39 H 1.09001 * 109.70189 * 174.48945 * 15 14 13 40 40 H 1.07997 * 119.90576 * 0.08318 * 20 19 17 41 41 H 1.07994 * 120.01470 * 179.61488 * 21 20 19 42 42 H 1.08000 * 119.83861 * 179.97438 * 22 21 20 43 43 H 1.08998 * 110.74981 * 90.77799 * 26 25 24 44 44 H 1.08992 * 110.75181 * 213.95106 * 26 25 24 45 45 H 1.09006 * 110.94673 * 46.02490 * 27 23 22 46 46 H 1.08997 * 110.97864 * 282.33246 * 27 23 22 47 47 H 1.09003 * 109.58711 * 173.14645 * 28 16 15 48 48 H 1.09006 * 109.58580 * 293.56715 * 28 16 15 49 49 H 1.08993 * 109.56387 * 185.55442 * 29 28 16 50 50 H 1.08999 * 109.37926 * 65.51619 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8925 1.0406 -2.4241 7 6 2.6123 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4499 9 14 2.7900 0.2700 -5.1183 10 1 4.1518 0.8562 -5.2032 11 1 2.5803 -0.6617 -6.2555 12 1 1.7791 1.3564 -5.1756 13 6 2.0401 -0.7211 1.2492 14 6 1.5297 0.0004 2.4986 15 6 2.0139 -0.7440 3.7469 16 7 3.4756 -0.8766 3.6813 17 6 4.2497 -0.4569 4.7017 18 8 3.7367 -0.0327 5.7194 19 6 5.7192 -0.5121 4.5842 20 6 6.3489 -1.7120 4.2515 21 6 7.7216 -1.7682 4.1463 22 6 8.4802 -0.6282 4.3640 23 6 7.8688 0.5623 4.6859 24 6 6.4875 0.6450 4.8047 25 8 6.0946 1.9022 5.1377 26 6 7.1546 2.8265 4.8394 27 6 8.4212 1.9470 4.9654 28 6 4.0780 -1.4696 2.4797 29 6 3.5704 -0.7222 1.2479 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 2.2491 -1.6317 -1.1526 34 1 3.2488 -2.3959 -4.2420 35 1 1.6763 -1.7486 1.2493 36 1 0.4400 0.0212 2.4871 37 1 1.9130 1.0208 2.5121 38 1 1.5585 -1.7337 3.7817 39 1 1.7375 -0.1830 4.6396 40 1 5.7589 -2.5999 4.0789 41 1 8.2065 -2.6998 3.8948 42 1 9.5560 -0.6747 4.2814 43 1 7.0539 3.2156 3.8262 44 1 7.1725 3.6404 5.5640 45 1 9.1659 2.2272 4.2204 46 1 8.8376 2.0053 5.9710 47 1 5.1633 -1.3851 2.5353 48 1 3.7944 -2.5198 2.4090 49 1 3.9332 -1.2157 0.3463 50 1 3.9350 0.3048 1.2723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493836051.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:46 Heat of formation + Delta-G solvation = -48.475529 kcal Electronic energy + Delta-G solvation = -30845.579327 eV Core-core repulsion = 26837.367880 eV Total energy + Delta-G solvation = -4008.211447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.34873 -41.13463 -39.21870 -38.30359 -36.88085 -34.70761 -33.85433 -32.49598 -32.12786 -31.23461 -30.32178 -29.77538 -26.85705 -25.89036 -24.74338 -24.25928 -23.55977 -22.99745 -22.15164 -21.15923 -20.27997 -19.13089 -18.46270 -18.22959 -17.70221 -17.34762 -16.81451 -16.71339 -16.28547 -15.99373 -15.61070 -15.50727 -15.16572 -14.94383 -14.82697 -14.35781 -14.25409 -14.22664 -14.08080 -13.93302 -13.55684 -13.55042 -13.36379 -13.02173 -12.88676 -12.80292 -12.74817 -12.72598 -12.34030 -12.23991 -12.17405 -12.13027 -11.88715 -11.77870 -11.51692 -11.36256 -11.21845 -10.95418 -10.82512 -9.91840 -9.68314 -9.20537 -8.93798 -7.90054 -5.16142 -0.04534 0.26667 1.48303 1.48515 1.52891 1.56746 1.96261 2.22464 2.58503 2.63887 3.36307 3.42380 3.43487 3.64671 3.75199 3.80440 3.86860 3.96192 4.10440 4.12070 4.19043 4.23577 4.29512 4.37093 4.40788 4.44632 4.53815 4.55040 4.57774 4.77169 4.78548 4.79964 4.84672 4.85825 4.92469 4.94554 5.03868 5.05013 5.13197 5.16217 5.23773 5.28910 5.34413 5.38735 5.47276 5.52757 5.60047 5.60647 5.67734 6.08050 6.29658 6.33042 7.02704 7.39666 8.16815 8.41212 9.33105 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.002985 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.467586 B = 9378.082374 C =10388.470341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.174 3.826 3 H 0.030 0.970 4 N -0.730 5.730 5 C -0.234 4.234 6 H 0.067 0.933 7 C -0.071 4.071 8 N -0.965 5.965 9 Si 0.963 3.037 10 H -0.289 1.289 11 H -0.296 1.296 12 H -0.275 1.275 13 C -0.079 4.079 14 C -0.117 4.117 15 C 0.113 3.887 16 N -0.598 5.598 17 C 0.561 3.439 18 O -0.581 6.581 19 C -0.174 4.174 20 C -0.062 4.062 21 C -0.144 4.144 22 C -0.048 4.048 23 C -0.187 4.187 24 C 0.120 3.880 25 O -0.329 6.329 26 C 0.036 3.964 27 C -0.100 4.100 28 C 0.107 3.893 29 C -0.115 4.115 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.374 0.626 34 H 0.250 0.750 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.119 0.881 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.069 0.931 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.994 2.369 18.917 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.048 0.952 4 N -0.370 5.370 5 C -0.366 4.366 6 H 0.085 0.915 7 C -0.263 4.263 8 N -0.616 5.616 9 Si 0.793 3.207 10 H -0.216 1.216 11 H -0.223 1.223 12 H -0.200 1.200 13 C -0.098 4.098 14 C -0.155 4.155 15 C -0.009 4.009 16 N -0.330 5.330 17 C 0.351 3.649 18 O -0.462 6.462 19 C -0.178 4.178 20 C -0.081 4.081 21 C -0.162 4.162 22 C -0.066 4.066 23 C -0.188 4.188 24 C 0.073 3.927 25 O -0.243 6.243 26 C -0.037 4.037 27 C -0.136 4.136 28 C -0.015 4.015 29 C -0.153 4.153 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.169 0.831 41 H 0.186 0.814 42 H 0.181 0.819 43 H 0.100 0.900 44 H 0.147 0.853 45 H 0.137 0.863 46 H 0.125 0.875 47 H 0.116 0.884 48 H 0.109 0.891 49 H 0.087 0.913 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.481 2.845 19.405 22.726 hybrid contribution -0.099 0.331 -1.285 1.331 sum 11.381 3.175 18.120 21.632 Atomic orbital electron populations 1.22352 0.97902 1.00977 1.00456 1.20406 0.92598 0.94519 0.85939 0.95228 1.42534 1.78327 1.10259 1.05920 1.19530 1.34591 0.93868 0.88587 0.91495 1.25379 1.03263 0.96812 1.00863 1.69787 1.52771 1.09868 1.29206 0.85294 0.77717 0.77507 0.80192 1.21596 1.22286 1.20013 1.21254 0.94903 0.99933 0.93730 1.21921 1.02115 0.98644 0.92830 1.21700 0.78629 1.01796 0.98770 1.48153 1.07403 1.60186 1.17231 1.18563 0.87372 0.76326 0.82675 1.90732 1.75820 1.48690 1.30951 1.19172 0.91960 0.94447 1.12221 1.21295 0.96277 0.95143 0.95343 1.21411 0.92539 1.00080 1.02181 1.20920 1.01914 0.89807 0.93955 1.21185 0.92017 0.98539 1.07015 1.19751 0.93338 0.85684 0.93885 1.86845 1.43591 1.14982 1.78849 1.24241 0.83648 0.92363 1.03492 1.21873 0.98130 0.88384 1.05257 1.22017 0.99347 0.97642 0.82513 1.21667 0.96052 1.00050 0.97535 0.93490 0.90991 0.95116 0.79308 0.94155 0.90699 0.88477 0.92971 0.89383 0.90204 0.83120 0.81440 0.81913 0.89981 0.85329 0.86312 0.87523 0.88445 0.89073 0.91276 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 9.14 71.98 0.66 -4.76 16 2 C 0.17 6.64 2.47 44.99 0.11 6.75 16 3 H 0.03 1.22 8.08 -2.38 -0.02 1.20 16 4 N -0.73 -35.32 4.41 -322.94 -1.42 -36.74 16 5 C -0.23 -12.75 9.93 84.03 0.83 -11.92 16 6 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 7 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 8 N -0.97 -57.43 13.06 21.65 0.28 -57.15 16 9 Si 0.96 45.75 29.55 68.60 2.03 47.78 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 C -0.08 -2.42 1.79 -10.77 -0.02 -2.44 16 14 C -0.12 -3.07 5.05 30.67 0.15 -2.92 16 15 C 0.11 2.92 6.42 86.36 0.55 3.47 16 16 N -0.60 -16.69 2.98 -823.50 -2.45 -19.14 16 17 C 0.56 18.14 7.15 86.69 0.62 18.76 16 18 O -0.58 -23.06 16.51 -4.02 -0.07 -23.12 16 19 C -0.17 -4.81 4.90 -19.93 -0.10 -4.91 16 20 C -0.06 -1.25 7.40 22.47 0.17 -1.08 16 21 C -0.14 -2.15 10.05 22.26 0.22 -1.93 16 22 C -0.05 -0.71 10.02 22.23 0.22 -0.48 16 23 C -0.19 -3.61 6.27 -19.54 -0.12 -3.74 16 24 C 0.12 3.28 6.78 23.01 0.16 3.44 16 25 O -0.33 -9.52 11.04 -91.88 -1.01 -10.53 16 26 C 0.04 0.62 8.01 72.57 0.58 1.21 16 27 C -0.10 -1.30 7.12 30.74 0.22 -1.08 16 28 C 0.11 2.68 5.48 86.22 0.47 3.15 16 29 C -0.11 -3.60 5.21 30.53 0.16 -3.44 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.99 6.40 -2.39 -0.02 1.97 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.37 19.23 7.58 -92.70 -0.70 18.53 16 34 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.10 2.21 6.36 -2.39 -0.02 2.20 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 2.25 7.03 -2.39 -0.02 2.24 16 40 H 0.15 2.47 7.35 -2.91 -0.02 2.45 16 41 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.10 2.29 4.74 -2.39 -0.01 2.27 16 48 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 49 H 0.07 2.52 7.40 -2.39 -0.02 2.50 16 50 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.62 394.31 2.96 -72.65 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.25 Total: 31.69 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 5.36 Total: -5.44 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -3.59 Total: -113.03 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.08 Total: -33.65 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -75.62 2.96 -72.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493836051.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.179 kcal (2) G-P(sol) polarization free energy of solvation -75.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds