Wall clock time and date at job start Sat Apr 11 2020 07:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99826 * 2 1 4 4 H 1.08997 * 109.46882 * 329.99549 * 3 2 1 5 5 C 1.53000 * 109.47218 * 89.99776 * 3 2 1 6 6 C 1.53002 * 109.47077 * 209.99724 * 3 2 1 7 7 N 1.46893 * 109.46991 * 63.27132 * 6 3 2 8 8 C 1.46849 * 111.00179 * 200.02054 * 7 6 3 9 9 C 1.53037 * 109.52469 * 174.16484 * 8 7 6 10 10 C 1.53119 * 109.28153 * 59.17797 * 9 8 7 11 11 C 1.53114 * 109.15904 * 302.34606 * 10 9 8 12 12 C 1.53000 * 109.53611 * 297.69515 * 11 10 9 13 13 C 1.53001 * 109.50390 * 177.59793 * 11 10 9 14 14 N 1.46493 * 109.47539 * 60.19169 * 13 11 10 15 15 C 1.34772 * 120.00531 * 179.97438 * 14 13 11 16 16 O 1.21283 * 119.99598 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00254 * 180.02562 * 15 14 13 18 18 S 1.81007 * 109.47152 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99849 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00359 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00201 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99524 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00653 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47074 * 270.00441 * 23 21 19 25 25 H 1.48507 * 109.47000 * 29.99977 * 23 21 19 26 26 H 1.48494 * 109.47552 * 149.99844 * 23 21 19 27 27 C 1.46846 * 111.00274 * 75.80936 * 7 6 3 28 28 H 1.08999 * 109.46971 * 60.00759 * 1 2 3 29 29 H 1.09006 * 109.46820 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47379 * 300.00150 * 1 2 3 31 31 H 1.09003 * 109.46822 * 299.99804 * 5 3 2 32 32 H 1.08997 * 109.47379 * 60.00077 * 5 3 2 33 33 H 1.09004 * 109.46871 * 180.02562 * 5 3 2 34 34 H 1.09005 * 109.47046 * 303.26962 * 6 3 2 35 35 H 1.08995 * 109.47239 * 183.27218 * 6 3 2 36 36 H 1.09006 * 109.46137 * 294.17794 * 8 7 6 37 37 H 1.08992 * 109.46347 * 54.14268 * 8 7 6 38 38 H 1.09000 * 109.50337 * 179.11987 * 9 8 7 39 39 H 1.09004 * 109.50315 * 299.19546 * 9 8 7 40 40 H 1.08996 * 109.52092 * 182.44290 * 10 9 8 41 41 H 1.08996 * 109.52336 * 62.25058 * 10 9 8 42 42 H 1.09002 * 109.47037 * 299.89768 * 12 11 10 43 43 H 1.09001 * 109.47583 * 59.90295 * 12 11 10 44 44 H 1.09006 * 109.47241 * 179.90460 * 12 11 10 45 45 H 1.09009 * 109.46610 * 300.19215 * 13 11 10 46 46 H 1.09001 * 109.47329 * 180.20044 * 13 11 10 47 47 H 0.97008 * 119.99533 * 0.02562 * 14 13 11 48 48 H 1.09004 * 109.46986 * 60.00663 * 17 15 14 49 49 H 1.09001 * 109.47564 * 300.00590 * 17 15 14 50 50 H 0.97003 * 120.00448 * 179.97438 * 22 21 19 51 51 H 1.09006 * 109.46252 * 65.82056 * 27 7 6 52 52 H 1.08998 * 109.46092 * 305.85737 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2175 1.7714 1.4425 6 6 3.3589 1.2633 -0.7212 7 7 3.1509 0.8917 -2.1270 8 6 4.3915 0.3828 -2.7260 9 6 4.1047 -0.1284 -4.1396 10 6 3.5391 1.0154 -4.9859 11 6 2.2748 1.5593 -4.3151 12 6 1.2144 0.4581 -4.2532 13 6 1.7364 2.7420 -5.1227 14 7 1.4114 2.2987 -6.4806 15 6 0.9174 3.1765 -7.3760 16 8 0.7423 4.3336 -7.0577 17 6 0.5826 2.7203 -8.7726 18 16 -0.0542 4.1195 -9.7281 19 6 -0.3556 3.3244 -11.2713 20 1 -0.1425 2.2720 -11.3873 21 6 -0.8680 4.0503 -12.3377 22 7 -1.1292 5.3326 -12.1958 23 14 -1.1882 3.2073 -13.9735 24 1 0.0280 3.2935 -14.8212 25 1 -1.5268 1.7807 -13.7373 26 1 -2.3204 3.8771 -14.6624 27 6 2.6145 2.0216 -2.8963 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.2566 1.8015 1.9562 32 1 2.8828 1.0776 1.9564 33 1 2.6604 2.7674 1.4424 34 1 4.0041 0.5268 -0.2423 35 1 3.8288 2.2454 -0.6707 36 1 5.1280 1.1851 -2.7723 37 1 4.7809 -0.4327 -2.1168 38 1 5.0287 -0.4916 -4.5896 39 1 3.3791 -0.9405 -4.0927 40 1 3.2929 0.6450 -5.9810 41 1 4.2802 1.8107 -5.0653 42 1 0.9737 0.1282 -5.2638 43 1 1.5983 -0.3842 -3.6777 44 1 0.3154 0.8459 -3.7739 45 1 2.4928 3.5257 -5.1675 46 1 0.8384 3.1310 -4.6427 47 1 1.5512 1.3731 -6.7350 48 1 -0.1737 1.9366 -8.7274 49 1 1.4805 2.3314 -9.2529 50 1 -1.4869 5.8401 -12.9411 51 1 3.3593 2.8162 -2.9419 52 1 1.7134 2.3963 -2.4108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500475666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:02 Heat of formation + Delta-G solvation = -116.273716 kcal Electronic energy + Delta-G solvation = -28632.310206 eV Core-core repulsion = 24756.602760 eV Total energy + Delta-G solvation = -3875.707446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28449 -40.21907 -38.96438 -36.69228 -34.60262 -34.53715 -33.07857 -32.05204 -30.84287 -28.03627 -27.77063 -27.68299 -26.96836 -26.63970 -24.31853 -22.38523 -21.92681 -21.55601 -19.90965 -19.40063 -17.96917 -17.60712 -17.40155 -16.87963 -16.73791 -16.62917 -16.28894 -15.93159 -15.77192 -15.69259 -15.37436 -15.02330 -14.92726 -14.56573 -14.34048 -14.16158 -14.00975 -13.81617 -13.55615 -13.34779 -13.16813 -13.12884 -13.07859 -12.88310 -12.76986 -12.61886 -12.52029 -12.29262 -12.24004 -12.01193 -11.73943 -11.62059 -11.45776 -11.28833 -11.14056 -11.04081 -10.94143 -10.43201 -10.27345 -10.10158 -9.17047 -8.66388 -8.34374 -6.12368 1.27253 1.42720 1.47314 1.57858 1.62402 2.25460 2.29527 2.89049 2.95543 2.99667 3.32763 3.64428 3.66090 3.81061 3.96325 4.05014 4.20831 4.21623 4.25816 4.28925 4.30036 4.32913 4.50409 4.51120 4.51465 4.54506 4.61093 4.61938 4.66227 4.73019 4.79445 4.80695 4.84136 4.90592 4.94071 4.97675 5.05834 5.07675 5.14721 5.19713 5.26336 5.30340 5.38602 5.42204 5.44742 5.61380 6.12735 6.18643 6.20191 6.42962 6.49965 7.06859 7.24542 8.74813 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.001901 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.437467 B =14725.111486 C =15045.764294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.089 3.911 4 H 0.055 0.945 5 C -0.172 4.172 6 C 0.059 3.941 7 N -0.530 5.530 8 C 0.057 3.943 9 C -0.112 4.112 10 C -0.112 4.112 11 C -0.055 4.055 12 C -0.127 4.127 13 C 0.134 3.866 14 N -0.707 5.707 15 C 0.533 3.467 16 O -0.567 6.567 17 C -0.129 4.129 18 S -0.151 6.151 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.258 1.258 26 H -0.278 1.278 27 C 0.071 3.929 28 H 0.038 0.962 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.413 0.587 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.271 0.729 51 H 0.035 0.965 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.890 -15.179 26.501 32.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.031 3.969 4 H 0.073 0.927 5 C -0.230 4.230 6 C -0.069 4.069 7 N -0.254 5.254 8 C -0.071 4.071 9 C -0.149 4.149 10 C -0.150 4.150 11 C -0.056 4.056 12 C -0.184 4.184 13 C 0.009 3.991 14 N -0.362 5.362 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.076 5.924 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.182 1.182 26 H -0.203 1.203 27 C -0.058 4.058 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.251 0.749 48 H 0.127 0.873 49 H 0.128 0.872 50 H 0.080 0.920 51 H 0.053 0.947 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.325 -13.672 26.976 31.957 hybrid contribution 0.211 -0.625 -1.405 1.552 sum 10.536 -14.297 25.572 31.134 Atomic orbital electron populations 1.22794 0.80811 1.03038 0.99829 1.87913 1.19979 1.27861 1.95050 1.22172 0.94642 0.84766 0.95366 0.92652 1.22238 1.02638 1.02071 0.96012 1.22235 0.96100 1.00574 0.88022 1.61759 1.29257 1.32972 1.01449 1.22133 0.89753 0.99118 0.96049 1.21584 1.01618 0.97867 0.93861 1.21663 0.95726 0.98483 0.99081 1.20671 0.96543 0.94346 0.94001 1.21738 0.96970 0.98319 1.01422 1.21341 0.99643 0.96814 0.81283 1.45739 1.65625 1.13130 1.11672 1.20052 0.76253 0.85375 0.86396 1.90688 1.53822 1.20061 1.79985 1.23369 1.05594 1.03785 0.95316 1.85575 1.83309 1.14202 1.09329 1.23205 1.50054 0.98603 0.97488 0.89893 1.26142 0.94242 0.95549 1.03333 1.70185 1.42477 1.08599 1.33511 0.84944 0.78130 0.78538 0.76313 1.19302 1.18175 1.20322 1.21991 0.99573 0.91559 0.92664 0.94372 0.89272 0.93827 0.92242 0.91751 0.90652 0.89808 0.92519 0.95024 0.90099 0.90398 0.90815 0.91225 0.92401 0.92892 0.90514 0.93630 0.92645 0.92551 0.74873 0.87284 0.87229 0.92010 0.94730 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.82 113.37 1.23 1.65 16 2 O -0.39 -6.60 10.27 -148.98 -1.53 -8.13 16 3 C 0.09 1.19 2.80 30.59 0.09 1.27 16 4 H 0.06 0.78 6.39 -2.39 -0.02 0.76 16 5 C -0.17 -1.77 9.53 71.98 0.69 -1.09 16 6 C 0.06 0.73 4.68 86.31 0.40 1.14 16 7 N -0.53 -7.50 3.79 -896.38 -3.40 -10.90 16 8 C 0.06 0.71 5.43 86.33 0.47 1.18 16 9 C -0.11 -1.36 5.74 30.65 0.18 -1.19 16 10 C -0.11 -1.64 4.58 30.67 0.14 -1.49 16 11 C -0.05 -0.89 0.53 -52.13 -0.03 -0.92 16 12 C -0.13 -2.05 7.86 71.98 0.57 -1.49 16 13 C 0.13 3.05 4.57 86.38 0.39 3.45 16 14 N -0.71 -18.06 4.98 -463.07 -2.31 -20.37 16 15 C 0.53 19.83 7.85 87.66 0.69 20.51 16 16 O -0.57 -26.56 15.86 -3.04 -0.05 -26.61 16 17 C -0.13 -5.15 6.16 71.23 0.44 -4.71 16 18 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 19 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.69 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16 23 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.07 1.09 4.01 86.33 0.35 1.44 16 28 H 0.04 0.52 8.08 -2.39 -0.02 0.50 16 29 H 0.09 1.02 8.14 -2.38 -0.02 1.01 16 30 H 0.04 0.48 7.87 -2.39 -0.02 0.47 16 31 H 0.06 0.61 7.87 -2.39 -0.02 0.59 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 1.02 7.79 -2.38 -0.02 1.00 16 35 H 0.06 0.62 8.00 -2.39 -0.02 0.60 16 36 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.08 0.92 7.93 -2.39 -0.02 0.90 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.96 6.59 -2.39 -0.02 0.95 16 40 H 0.07 0.99 6.95 -2.39 -0.02 0.97 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.05 0.82 6.86 -2.39 -0.02 0.80 16 43 H 0.08 1.25 6.01 -2.39 -0.01 1.24 16 44 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.41 8.05 6.19 -92.70 -0.57 7.48 16 48 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 49 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 50 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 51 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 52 H 0.07 1.16 6.67 -2.39 -0.02 1.15 16 Total: -1.00 -75.23 416.13 0.89 -74.34 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.31 Total: 21.18 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 6.70 Total: -9.70 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -5.42 Total: -87.18 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.58 Total: -34.73 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -75.23 0.89 -74.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500475666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.932 kcal (2) G-P(sol) polarization free energy of solvation -75.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds