Wall clock time and date at job start Sat Apr 11 2020 07:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00303 * 2 1 4 4 H 1.08999 * 109.47246 * 29.99694 * 3 2 1 5 5 C 1.53002 * 109.47102 * 270.00390 * 3 2 1 6 6 C 1.52995 * 109.47377 * 149.99972 * 3 2 1 7 7 N 1.46904 * 109.47257 * 299.70195 * 6 3 2 8 8 C 1.46845 * 111.00218 * 169.81546 * 7 6 3 9 9 C 1.53028 * 109.52260 * 185.83962 * 8 7 6 10 10 C 1.53117 * 109.27922 * 300.81618 * 9 8 7 11 11 C 1.53117 * 109.15802 * 57.65901 * 10 9 8 12 12 C 1.52998 * 109.54023 * 62.30612 * 11 10 9 13 13 C 1.53003 * 109.50653 * 182.40570 * 11 10 9 14 14 N 1.46505 * 109.46908 * 299.80242 * 13 11 10 15 15 C 1.34771 * 120.00389 * 179.97438 * 14 13 11 16 16 O 1.21289 * 119.99493 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00416 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.46987 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99792 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00166 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00119 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99866 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99892 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46898 * 90.00223 * 23 21 19 25 25 H 1.48498 * 109.47047 * 209.99537 * 23 21 19 26 26 H 1.48493 * 109.47392 * 329.99783 * 23 21 19 27 27 C 1.46851 * 110.99484 * 294.02661 * 7 6 3 28 28 H 1.08998 * 109.47039 * 60.00185 * 1 2 3 29 29 H 1.09000 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46828 * 300.00253 * 1 2 3 31 31 H 1.09001 * 109.47469 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47005 * 299.99681 * 5 3 2 33 33 H 1.08993 * 109.47805 * 59.99421 * 5 3 2 34 34 H 1.08995 * 109.47402 * 179.69993 * 6 3 2 35 35 H 1.08998 * 109.47434 * 59.70042 * 6 3 2 36 36 H 1.09007 * 109.45815 * 305.85543 * 8 7 6 37 37 H 1.09001 * 109.46287 * 65.82076 * 8 7 6 38 38 H 1.08996 * 109.50830 * 60.75959 * 9 8 7 39 39 H 1.09003 * 109.50454 * 180.83691 * 9 8 7 40 40 H 1.08994 * 109.52516 * 297.75123 * 10 9 8 41 41 H 1.09000 * 109.52459 * 177.56084 * 10 9 8 42 42 H 1.08996 * 109.47397 * 180.09788 * 12 11 10 43 43 H 1.09003 * 109.46939 * 300.10191 * 12 11 10 44 44 H 1.08995 * 109.47295 * 60.09978 * 12 11 10 45 45 H 1.08992 * 109.47731 * 179.80202 * 13 11 10 46 46 H 1.08999 * 109.47279 * 59.79480 * 13 11 10 47 47 H 0.97004 * 119.99640 * 359.71906 * 14 13 11 48 48 H 1.08995 * 109.47368 * 300.00363 * 17 15 14 49 49 H 1.09000 * 109.46615 * 60.00138 * 17 15 14 50 50 H 0.97004 * 120.00008 * 180.02562 * 22 21 19 51 51 H 1.08992 * 109.46683 * 54.14337 * 27 7 6 52 52 H 1.08996 * 109.45946 * 294.17054 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3589 1.2632 0.7212 7 7 3.1589 0.8228 2.1083 8 6 4.4434 0.5380 2.7605 9 6 4.1918 -0.0545 4.1488 10 6 3.3835 0.9417 4.9847 11 6 2.0724 1.2584 4.2601 12 6 1.2406 -0.0187 4.1259 13 6 1.2853 2.2989 5.0593 14 7 0.9860 1.7675 6.3913 15 6 0.2963 2.5148 7.2757 16 8 -0.0762 3.6275 6.9690 17 6 -0.0120 1.9679 8.6457 18 16 -0.9417 3.1995 9.5917 19 6 -1.1597 2.3226 11.1045 20 1 -0.7587 1.3257 11.2134 21 6 -1.8467 2.9130 12.1561 22 7 -2.3349 4.1282 12.0236 23 14 -2.0771 1.9836 13.7600 24 1 -0.9382 2.2733 14.6680 25 1 -3.3447 2.4132 14.4034 26 1 -2.1315 0.5255 13.4839 27 6 2.3853 1.8129 2.8684 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.6615 2.7669 -1.4426 32 1 2.8829 1.0774 -1.9564 33 1 1.2570 1.8014 -1.9564 34 1 3.8048 2.2578 0.7166 35 1 4.0224 0.5653 0.2106 36 1 5.0065 -0.1748 2.1580 37 1 5.0140 1.4617 2.8578 38 1 3.6332 -0.9853 4.0515 39 1 5.1454 -0.2519 4.6386 40 1 3.9583 1.8586 5.1151 41 1 3.1648 0.5061 5.9597 42 1 0.3083 0.2076 3.6084 43 1 1.8017 -0.7596 3.5564 44 1 1.0190 -0.4139 5.1172 45 1 0.3538 2.5266 4.5413 46 1 1.8789 3.2080 5.1559 47 1 1.2811 0.8762 6.6354 48 1 -0.6061 1.0592 8.5489 49 1 0.9194 1.7395 9.1638 50 1 -2.8147 4.5409 12.7587 51 1 1.4537 2.0260 2.3444 52 1 2.9656 2.7305 2.9652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500475667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:05 Heat of formation + Delta-G solvation = -92.142864 kcal Electronic energy + Delta-G solvation = -28716.023475 eV Core-core repulsion = 24841.362421 eV Total energy + Delta-G solvation = -3874.661054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44785 -39.02639 -38.23135 -35.76746 -33.64068 -32.41819 -32.17968 -31.47095 -29.34358 -27.31764 -27.16470 -26.38137 -25.83374 -25.31812 -23.77554 -21.62196 -21.21349 -20.24127 -18.76251 -17.87438 -17.01753 -16.74501 -16.19766 -15.78310 -15.61724 -15.41774 -15.11662 -15.02763 -14.79419 -14.64049 -14.17488 -14.08635 -13.76467 -13.62765 -13.27761 -13.18378 -12.98173 -12.86563 -12.61406 -12.58641 -12.50610 -12.17486 -11.93254 -11.76874 -11.67881 -11.55683 -11.30842 -11.05540 -11.01739 -11.00953 -10.77357 -10.75573 -10.54651 -10.34342 -9.85113 -9.79875 -9.36681 -9.05815 -8.81707 -8.56302 -8.21779 -6.48356 -6.20506 -3.90765 3.05073 3.14741 3.23106 3.28306 3.32033 3.44851 3.51349 3.80666 4.21694 4.35039 4.36724 4.52552 4.58949 4.72868 4.78000 4.85933 4.95529 5.01730 5.03718 5.07283 5.14573 5.15057 5.18777 5.21870 5.24085 5.27065 5.33001 5.40140 5.44398 5.50384 5.55060 5.56416 5.61146 5.66391 5.73308 5.75299 5.80001 5.84512 5.92313 5.95372 5.98508 6.10611 6.16400 6.33291 6.64879 6.75159 6.77749 6.98545 7.60781 7.76077 8.36467 8.66296 9.24795 10.86903 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021627 B = 0.001941 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.344834 B =14425.725301 C =14865.066853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.088 3.912 4 H 0.061 0.939 5 C -0.175 4.175 6 C 0.059 3.941 7 N -0.524 5.524 8 C 0.057 3.943 9 C -0.117 4.117 10 C -0.112 4.112 11 C -0.066 4.066 12 C -0.132 4.132 13 C 0.133 3.867 14 N -0.734 5.734 15 C 0.531 3.469 16 O -0.520 6.520 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.067 3.933 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.397 0.603 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.268 0.732 51 H 0.075 0.925 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.473 -9.618 -25.893 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C 0.029 3.971 4 H 0.079 0.921 5 C -0.234 4.234 6 C -0.069 4.069 7 N -0.248 5.248 8 C -0.071 4.071 9 C -0.155 4.155 10 C -0.150 4.150 11 C -0.067 4.067 12 C -0.189 4.189 13 C 0.008 3.992 14 N -0.390 5.390 15 C 0.317 3.683 16 O -0.394 6.394 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.062 4.062 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.232 0.768 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.078 0.922 51 H 0.094 0.906 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.598 -8.204 -26.339 30.327 hybrid contribution 0.644 -1.210 1.479 2.017 sum 13.242 -9.414 -24.860 29.698 Atomic orbital electron populations 1.22745 0.81511 1.02593 0.99581 1.87973 1.19034 1.26647 1.94891 1.22131 0.94650 0.85539 0.94742 0.92147 1.22273 1.02564 1.01581 0.96936 1.22207 0.96287 0.99403 0.89017 1.61788 1.18119 1.43809 1.01042 1.22090 0.89979 0.99365 0.95662 1.21617 1.00142 0.99472 0.94248 1.21661 0.95211 0.99515 0.98595 1.20783 0.95630 0.96246 0.94047 1.21779 0.99269 0.96627 1.01245 1.21237 0.99192 0.95807 0.82998 1.46003 1.59003 1.19761 1.14191 1.20293 0.76847 0.85264 0.85900 1.90699 1.50879 1.19430 1.78402 1.23524 1.05184 1.05870 0.95790 1.85390 1.68672 1.19137 1.10216 1.22871 1.41849 1.04146 0.99434 0.90941 1.24997 0.94761 0.95116 0.98772 1.70021 1.34579 1.13215 1.32491 0.86166 0.77807 0.79662 0.81852 1.20289 1.20764 1.19696 1.22065 0.98233 0.92506 0.93346 0.94671 0.89811 0.94020 0.91691 0.91684 0.92223 0.93635 0.89911 0.90799 0.95087 0.90593 0.91533 0.91945 0.91435 0.92949 0.90696 0.93217 0.91701 0.91863 0.76780 0.89283 0.89313 0.92209 0.90643 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.37 -3.32 10.22 -35.23 -0.36 -3.68 16 3 C 0.09 0.63 2.61 -26.73 -0.07 0.57 16 4 H 0.06 0.44 6.07 -51.93 -0.31 0.13 16 5 C -0.18 -1.02 9.53 37.16 0.35 -0.66 16 6 C 0.06 0.41 4.65 -3.82 -0.02 0.39 16 7 N -0.52 -4.13 3.81 -234.68 -0.89 -5.03 16 8 C 0.06 0.41 5.46 -3.84 -0.02 0.39 16 9 C -0.12 -0.85 5.74 -26.66 -0.15 -1.00 16 10 C -0.11 -0.93 4.58 -26.61 -0.12 -1.06 16 11 C -0.07 -0.59 0.53 -154.43 -0.08 -0.67 16 12 C -0.13 -1.19 7.86 37.16 0.29 -0.90 16 13 C 0.13 1.57 4.57 -4.04 -0.02 1.55 16 14 N -0.73 -9.92 4.98 -60.29 -0.30 -10.22 16 15 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 16 O -0.52 -11.94 15.86 5.55 0.09 -11.85 16 17 C -0.15 -3.12 6.16 36.00 0.22 -2.89 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.07 0.56 4.01 -3.83 -0.02 0.55 16 28 H 0.03 0.22 7.87 -51.93 -0.41 -0.19 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.34 7.87 -51.93 -0.41 -0.07 16 34 H 0.05 0.29 8.12 -51.93 -0.42 -0.14 16 35 H 0.08 0.57 7.98 -51.93 -0.41 0.16 16 36 H 0.07 0.49 8.01 -51.93 -0.42 0.07 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.59 6.58 -51.93 -0.34 0.24 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.57 6.96 -51.93 -0.36 0.21 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.69 6.01 -51.93 -0.31 0.38 16 44 H 0.05 0.44 6.85 -51.93 -0.36 0.09 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.40 4.37 6.19 -40.82 -0.25 4.12 16 48 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 49 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 50 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 51 H 0.08 0.65 6.21 -51.93 -0.32 0.32 16 52 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 415.53 15.07 6.26 6.26 Total: -1.00 -34.19 415.53 -9.50 -43.69 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -9.37 Total: -0.70 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 1.57 Total: -5.52 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.46 Total: -40.81 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.27 Total: -15.53 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.19 -9.50 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500475667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.450 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds