Wall clock time and date at job start Sat Apr 11 2020 07:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47194 * 2 1 4 4 N 1.46496 * 109.47408 * 120.00269 * 2 1 3 5 5 C 1.34779 * 120.00043 * 275.00026 * 4 2 1 6 6 O 1.21282 * 119.99782 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00388 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.20352 * 84.59211 * 7 5 4 9 9 O 1.42723 * 109.33656 * 325.00312 * 7 5 4 10 10 C 1.43215 * 113.13302 * 291.53865 * 9 7 5 11 11 C 1.52970 * 108.47933 * 289.32985 * 10 9 7 12 12 C 1.50741 * 109.76367 * 49.20748 * 11 10 9 13 13 C 1.38600 * 118.76439 * 162.99364 * 12 11 10 14 14 C 1.38067 * 120.27351 * 179.81675 * 13 12 11 15 15 C 1.38264 * 119.86650 * 359.96597 * 14 13 12 16 16 C 1.38057 * 119.89067 * 0.09296 * 15 14 13 17 17 C 1.37899 * 121.35257 * 342.94507 * 12 11 10 18 18 C 1.53000 * 109.46865 * 240.00326 * 2 1 3 19 19 C 1.53943 * 113.74257 * 156.67547 * 18 2 1 20 20 N 1.47585 * 86.11954 * 222.04787 * 19 18 2 21 21 C 1.36933 * 134.49336 * 204.64395 * 20 19 18 22 22 H 1.08002 * 119.99631 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00014 * 359.97438 * 21 20 19 24 24 N 1.31613 * 120.00018 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99961 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47100 * 89.99934 * 25 23 21 27 27 H 1.48498 * 109.47032 * 210.00021 * 25 23 21 28 28 H 1.48501 * 109.46922 * 330.00113 * 25 23 21 29 29 C 1.47584 * 91.01247 * 24.63822 * 20 19 18 30 30 H 1.09004 * 109.46552 * 299.99619 * 1 2 3 31 31 H 1.08999 * 109.46920 * 59.99685 * 1 2 3 32 32 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 33 33 H 0.96995 * 120.00188 * 94.99791 * 4 2 1 34 34 H 1.08997 * 109.47432 * 300.40644 * 8 7 5 35 35 H 1.09000 * 109.46738 * 60.40933 * 8 7 5 36 36 H 1.08995 * 109.46836 * 180.40032 * 8 7 5 37 37 H 1.08998 * 109.63233 * 49.03169 * 10 9 7 38 38 H 1.09000 * 109.63166 * 169.62896 * 10 9 7 39 39 H 1.09005 * 109.41665 * 169.29969 * 11 10 9 40 40 H 1.08998 * 109.42429 * 289.17495 * 11 10 9 41 41 H 1.07992 * 119.86310 * 359.82802 * 13 12 11 42 42 H 1.08001 * 120.07025 * 179.97438 * 14 13 12 43 43 H 1.08000 * 120.05643 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.84582 * 180.02562 * 16 15 14 45 45 H 1.09005 * 112.94179 * 288.40675 * 18 2 1 46 46 H 1.09002 * 113.76675 * 336.34154 * 19 18 2 47 47 H 1.08992 * 113.77569 * 107.74494 * 19 18 2 48 48 H 0.96999 * 120.00441 * 179.97438 * 24 23 21 49 49 H 1.09004 * 113.76702 * 221.06161 * 29 20 19 50 50 H 1.08997 * 113.76984 * 89.66302 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6490 -0.7288 3.5877 8 6 4.1791 -0.7347 3.5767 9 8 2.1713 -2.0737 3.5847 10 6 0.7553 -2.1683 3.7770 11 6 0.4364 -1.7917 5.2250 12 6 1.1236 -0.4974 5.5782 13 6 0.6949 0.2022 6.6953 14 6 1.3047 1.3891 7.0496 15 6 2.3478 1.8817 6.2873 16 6 2.7745 1.1861 5.1738 17 6 2.1616 -0.0048 4.8156 18 6 2.0400 -0.7212 -1.2493 19 6 3.4666 -0.3145 -1.6608 20 7 2.9583 -0.3118 -3.0464 21 6 3.5327 -0.4676 -4.2796 22 1 2.9221 -0.4225 -5.1693 23 6 4.8998 -0.6835 -4.3862 24 7 5.6438 -0.7390 -3.3020 25 14 5.6835 -0.8954 -6.0686 26 1 6.1036 0.4304 -6.5895 27 1 6.8701 -1.7808 -5.9540 28 1 4.6998 -1.5040 -6.9998 29 6 1.5822 -0.0739 -2.5689 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1525 34 1 4.5340 -1.2457 2.6817 35 1 4.5463 0.2916 3.5789 36 1 4.5467 -1.2540 4.4616 37 1 0.2471 -1.4821 3.0996 38 1 0.4267 -3.1893 3.5832 39 1 -0.6411 -1.6732 5.3397 40 1 0.7871 -2.5806 5.8903 41 1 -0.1193 -0.1829 7.2911 42 1 0.9677 1.9317 7.9205 43 1 2.8272 2.8097 6.5619 44 1 3.5896 1.5713 4.5791 45 1 1.8828 -1.7992 -1.2116 46 1 3.7640 0.6701 -1.3002 47 1 4.2152 -1.0831 -1.4690 48 1 6.5990 -0.8903 -3.3764 49 1 0.8264 -0.6505 -3.1021 50 1 1.3261 0.9814 -2.4749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506683683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:15 Heat of formation + Delta-G solvation = -0.568622 kcal Electronic energy + Delta-G solvation = -31153.079544 eV Core-core repulsion = 27146.945496 eV Total energy + Delta-G solvation = -4006.134048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29190 -39.24970 -38.08889 -37.56381 -34.82605 -33.97411 -32.40833 -32.16634 -30.56407 -29.83967 -28.29453 -27.50832 -25.26033 -24.59231 -24.06805 -23.85957 -22.53274 -21.42034 -20.56608 -19.91510 -18.87084 -17.75457 -17.29433 -16.71279 -16.35822 -15.93114 -15.68221 -15.06404 -14.94202 -14.83503 -14.44037 -14.25720 -13.85660 -13.79402 -13.48608 -13.39292 -13.37678 -12.99507 -12.63194 -12.47059 -12.38322 -12.21839 -12.06762 -12.05160 -11.89689 -11.65974 -11.32437 -11.28450 -11.16826 -10.93917 -10.89352 -10.70161 -10.41503 -10.33144 -9.92196 -9.74117 -9.46542 -9.31057 -8.92408 -8.80253 -8.78481 -8.73297 -6.85909 -5.75125 -3.07353 1.12492 1.24481 2.62801 3.15972 3.39875 3.44486 3.46303 3.46594 3.65585 4.33168 4.41880 4.46332 4.56019 4.69211 4.74794 4.91235 4.92500 5.01711 5.12027 5.20567 5.24667 5.28986 5.30175 5.38469 5.42926 5.54095 5.57349 5.59051 5.61493 5.66368 5.81328 5.82131 5.89287 5.95044 5.98062 6.03589 6.24017 6.27026 6.36174 6.36410 6.37622 6.40605 6.59541 6.66150 6.71992 6.81846 6.85903 7.25107 7.38020 7.57969 7.69393 8.00020 8.33473 9.06407 9.72474 10.62036 11.41858 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.002549 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.438591 B =10980.183194 C =11300.741663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.087 0.913 4 N -0.706 5.706 5 C 0.497 3.503 6 O -0.531 6.531 7 C 0.144 3.856 8 C -0.138 4.138 9 O -0.356 6.356 10 C 0.052 3.948 11 C -0.114 4.114 12 C -0.070 4.070 13 C -0.125 4.125 14 C -0.113 4.113 15 C -0.126 4.126 16 C -0.079 4.079 17 C -0.093 4.093 18 C -0.146 4.146 19 C 0.171 3.829 20 N -0.612 5.612 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.130 3.870 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.404 0.596 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.088 0.912 46 H 0.025 0.975 47 H 0.072 0.928 48 H 0.253 0.747 49 H 0.044 0.956 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 -1.712 22.099 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.105 0.895 4 N -0.357 5.357 5 C 0.281 3.719 6 O -0.408 6.408 7 C 0.101 3.899 8 C -0.195 4.195 9 O -0.274 6.274 10 C -0.024 4.024 11 C -0.151 4.151 12 C -0.070 4.070 13 C -0.143 4.143 14 C -0.131 4.131 15 C -0.144 4.144 16 C -0.097 4.097 17 C -0.093 4.093 18 C -0.166 4.166 19 C 0.046 3.954 20 N -0.338 5.338 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.003 3.997 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.106 0.894 46 H 0.043 0.957 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.221 -1.094 21.842 24.140 hybrid contribution 0.386 -0.126 -0.869 0.959 sum -9.835 -1.219 20.973 23.197 Atomic orbital electron populations 1.22129 0.95771 1.01681 1.02016 1.21123 0.93414 0.97590 0.83408 0.89520 1.46088 1.65948 1.14434 1.09235 1.20911 0.78192 0.87694 0.85075 1.90710 1.49342 1.15712 1.85014 1.20480 0.96818 0.82340 0.90269 1.21863 0.89379 1.03820 1.04486 1.88143 1.22576 1.23773 1.92917 1.22751 0.81713 1.02916 0.95069 1.21126 1.00673 0.95148 0.98190 1.19453 0.95550 0.96420 0.95545 1.20973 1.00612 0.95733 0.96983 1.21105 0.96292 0.96081 0.99643 1.21092 0.97685 1.00002 0.95628 1.21050 0.99272 0.93435 0.95921 1.19541 0.97193 0.96563 0.96050 1.23816 1.00968 0.99686 0.92112 1.22254 0.91719 0.98224 0.83215 1.45948 1.02456 1.83271 1.02162 1.19020 0.91081 1.42020 0.82905 0.90306 1.24782 0.95970 1.02455 0.97300 1.69813 1.05143 1.55642 1.26191 0.86130 0.78905 0.77550 0.83240 1.21653 1.21634 1.20641 1.22499 0.89725 0.96703 0.90757 0.92993 0.91354 0.92735 0.76068 0.90204 0.90036 0.90404 0.92274 0.87590 0.89641 0.89480 0.86084 0.86065 0.85876 0.85631 0.89370 0.95736 0.90992 0.93683 0.93785 0.94818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.29 37.16 0.35 -1.78 16 2 C 0.15 2.33 2.42 -67.93 -0.16 2.17 16 3 H 0.09 1.57 7.37 -51.93 -0.38 1.19 16 4 N -0.71 -9.99 4.97 -53.81 -0.27 -10.26 16 5 C 0.50 7.39 5.42 -10.99 -0.06 7.34 16 6 O -0.53 -9.55 15.27 5.56 0.08 -9.46 16 7 C 0.14 1.81 0.90 -92.94 -0.08 1.73 16 8 C -0.14 -1.57 8.39 37.16 0.31 -1.25 16 9 O -0.36 -4.12 9.50 -35.23 -0.33 -4.45 16 10 C 0.05 0.50 6.72 37.14 0.25 0.75 16 11 C -0.11 -0.99 6.00 -27.88 -0.17 -1.16 16 12 C -0.07 -0.77 5.78 -104.59 -0.60 -1.38 16 13 C -0.13 -1.22 9.67 -39.51 -0.38 -1.60 16 14 C -0.11 -1.08 10.05 -39.63 -0.40 -1.48 16 15 C -0.13 -1.32 10.05 -39.64 -0.40 -1.72 16 16 C -0.08 -0.96 8.27 -39.50 -0.33 -1.28 16 17 C -0.09 -1.16 4.41 -104.62 -0.46 -1.62 16 18 C -0.15 -2.62 3.50 -89.69 -0.31 -2.93 16 19 C 0.17 4.00 7.07 -2.97 -0.02 3.98 16 20 N -0.61 -15.77 3.70 -177.88 -0.66 -16.43 16 21 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -27.40 11.38 55.49 0.63 -26.77 16 25 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 C 0.13 2.61 7.56 -2.97 -0.02 2.59 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.89 7.43 -51.93 -0.39 0.51 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.40 5.20 8.03 -40.82 -0.33 4.87 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.89 6.51 -51.93 -0.34 0.56 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.63 7.09 -51.93 -0.37 0.26 16 38 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.13 1.48 6.52 -52.49 -0.34 1.14 16 45 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 46 H 0.02 0.61 7.96 -51.93 -0.41 0.20 16 47 H 0.07 1.85 7.15 -51.93 -0.37 1.48 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -33.65 397.12 -10.30 -43.95 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.97 Total: 4.66 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.75 Total: -4.47 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.29 Total: -53.46 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.25 Total: -13.92 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.65 -10.30 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506683683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.383 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds