Wall clock time and date at job start Sat Apr 11 2020 07:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47194 * 2 1 4 4 N 1.46496 * 109.47408 * 120.00269 * 2 1 3 5 5 C 1.34779 * 120.00043 * 275.00026 * 4 2 1 6 6 O 1.21282 * 119.99782 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00388 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.20352 * 84.59211 * 7 5 4 9 9 O 1.42723 * 109.33656 * 325.00312 * 7 5 4 10 10 C 1.43215 * 113.13302 * 291.53865 * 9 7 5 11 11 C 1.52970 * 108.47933 * 289.32985 * 10 9 7 12 12 C 1.50741 * 109.76367 * 49.20748 * 11 10 9 13 13 C 1.38600 * 118.76439 * 162.99364 * 12 11 10 14 14 C 1.38067 * 120.27351 * 179.81675 * 13 12 11 15 15 C 1.38264 * 119.86650 * 359.96597 * 14 13 12 16 16 C 1.38057 * 119.89067 * 0.09296 * 15 14 13 17 17 C 1.37899 * 121.35257 * 342.94507 * 12 11 10 18 18 C 1.53000 * 109.46865 * 240.00326 * 2 1 3 19 19 C 1.53943 * 113.74257 * 156.67547 * 18 2 1 20 20 N 1.47585 * 86.11954 * 222.04787 * 19 18 2 21 21 C 1.36933 * 134.49336 * 204.64395 * 20 19 18 22 22 H 1.08002 * 119.99631 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00014 * 359.97438 * 21 20 19 24 24 N 1.31613 * 120.00018 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99961 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47100 * 89.99934 * 25 23 21 27 27 H 1.48498 * 109.47032 * 210.00021 * 25 23 21 28 28 H 1.48501 * 109.46922 * 330.00113 * 25 23 21 29 29 C 1.47584 * 91.01247 * 24.63822 * 20 19 18 30 30 H 1.09004 * 109.46552 * 299.99619 * 1 2 3 31 31 H 1.08999 * 109.46920 * 59.99685 * 1 2 3 32 32 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 33 33 H 0.96995 * 120.00188 * 94.99791 * 4 2 1 34 34 H 1.08997 * 109.47432 * 300.40644 * 8 7 5 35 35 H 1.09000 * 109.46738 * 60.40933 * 8 7 5 36 36 H 1.08995 * 109.46836 * 180.40032 * 8 7 5 37 37 H 1.08998 * 109.63233 * 49.03169 * 10 9 7 38 38 H 1.09000 * 109.63166 * 169.62896 * 10 9 7 39 39 H 1.09005 * 109.41665 * 169.29969 * 11 10 9 40 40 H 1.08998 * 109.42429 * 289.17495 * 11 10 9 41 41 H 1.07992 * 119.86310 * 359.82802 * 13 12 11 42 42 H 1.08001 * 120.07025 * 179.97438 * 14 13 12 43 43 H 1.08000 * 120.05643 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.84582 * 180.02562 * 16 15 14 45 45 H 1.09005 * 112.94179 * 288.40675 * 18 2 1 46 46 H 1.09002 * 113.76675 * 336.34154 * 19 18 2 47 47 H 1.08992 * 113.77569 * 107.74494 * 19 18 2 48 48 H 0.96999 * 120.00441 * 179.97438 * 24 23 21 49 49 H 1.09004 * 113.76702 * 221.06161 * 29 20 19 50 50 H 1.08997 * 113.76984 * 89.66302 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6490 -0.7288 3.5877 8 6 4.1791 -0.7347 3.5767 9 8 2.1713 -2.0737 3.5847 10 6 0.7553 -2.1683 3.7770 11 6 0.4364 -1.7917 5.2250 12 6 1.1236 -0.4974 5.5782 13 6 0.6949 0.2022 6.6953 14 6 1.3047 1.3891 7.0496 15 6 2.3478 1.8817 6.2873 16 6 2.7745 1.1861 5.1738 17 6 2.1616 -0.0048 4.8156 18 6 2.0400 -0.7212 -1.2493 19 6 3.4666 -0.3145 -1.6608 20 7 2.9583 -0.3118 -3.0464 21 6 3.5327 -0.4676 -4.2796 22 1 2.9221 -0.4225 -5.1693 23 6 4.8998 -0.6835 -4.3862 24 7 5.6438 -0.7390 -3.3020 25 14 5.6835 -0.8954 -6.0686 26 1 6.1036 0.4304 -6.5895 27 1 6.8701 -1.7808 -5.9540 28 1 4.6998 -1.5040 -6.9998 29 6 1.5822 -0.0739 -2.5689 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1525 34 1 4.5340 -1.2457 2.6817 35 1 4.5463 0.2916 3.5789 36 1 4.5467 -1.2540 4.4616 37 1 0.2471 -1.4821 3.0996 38 1 0.4267 -3.1893 3.5832 39 1 -0.6411 -1.6732 5.3397 40 1 0.7871 -2.5806 5.8903 41 1 -0.1193 -0.1829 7.2911 42 1 0.9677 1.9317 7.9205 43 1 2.8272 2.8097 6.5619 44 1 3.5896 1.5713 4.5791 45 1 1.8828 -1.7992 -1.2116 46 1 3.7640 0.6701 -1.3002 47 1 4.2152 -1.0831 -1.4690 48 1 6.5990 -0.8903 -3.3764 49 1 0.8264 -0.6505 -3.1021 50 1 1.3261 0.9814 -2.4749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506683683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:14 Heat of formation + Delta-G solvation = -21.434576 kcal Electronic energy + Delta-G solvation = -31153.984359 eV Core-core repulsion = 27146.945496 eV Total energy + Delta-G solvation = -4007.038863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.24513 -40.50378 -39.48739 -38.50705 -36.23940 -34.82015 -34.15885 -33.21362 -31.82939 -30.74453 -29.36562 -29.09214 -26.75299 -25.95424 -25.43535 -24.78866 -23.70105 -22.55011 -21.69858 -21.20222 -20.17236 -18.80693 -18.72212 -18.21489 -17.34873 -17.04386 -16.91255 -16.47747 -16.07192 -16.00323 -15.72391 -15.39188 -15.17110 -14.87371 -14.70163 -14.56899 -14.21590 -14.18769 -14.03198 -13.54885 -13.38162 -13.30301 -13.22243 -13.11795 -13.05724 -12.92006 -12.85998 -12.71930 -12.65822 -12.53467 -12.03231 -11.97413 -11.75064 -11.68954 -11.49959 -11.28831 -11.22549 -10.87803 -10.41767 -10.05737 -9.72787 -9.56334 -8.92669 -7.90589 -5.24516 0.32055 0.45663 1.44673 1.46366 1.47084 1.55542 2.08021 2.46923 2.57760 2.82943 3.29609 3.36890 3.46231 3.60881 3.68538 3.78782 3.82493 3.93190 3.95035 4.17078 4.24409 4.25770 4.27950 4.46210 4.49840 4.52901 4.56636 4.61510 4.66300 4.72269 4.72606 4.79915 4.83778 4.86032 4.91592 4.98420 5.05453 5.06746 5.09146 5.16637 5.25123 5.29528 5.45840 5.50427 5.54505 5.58765 5.58970 5.64879 5.88323 5.93479 6.06925 6.53519 6.91505 7.16767 7.60524 8.56317 9.26103 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.002549 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.438591 B =10980.183194 C =11300.741663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.159 3.841 3 H 0.058 0.942 4 N -0.701 5.701 5 C 0.497 3.503 6 O -0.566 6.566 7 C 0.151 3.849 8 C -0.139 4.139 9 O -0.361 6.361 10 C 0.045 3.955 11 C -0.111 4.111 12 C -0.084 4.084 13 C -0.128 4.128 14 C -0.114 4.114 15 C -0.137 4.137 16 C -0.101 4.101 17 C -0.116 4.116 18 C -0.108 4.108 19 C 0.168 3.832 20 N -0.644 5.644 21 C -0.235 4.235 22 H 0.085 0.915 23 C -0.070 4.070 24 N -0.953 5.953 25 Si 0.979 3.021 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.131 3.869 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.002 0.998 47 H 0.042 0.958 48 H 0.248 0.752 49 H 0.066 0.934 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.691 -2.877 23.076 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.053 3.947 3 H 0.077 0.923 4 N -0.352 5.352 5 C 0.283 3.717 6 O -0.445 6.445 7 C 0.108 3.892 8 C -0.196 4.196 9 O -0.279 6.279 10 C -0.031 4.031 11 C -0.148 4.148 12 C -0.084 4.084 13 C -0.146 4.146 14 C -0.132 4.132 15 C -0.155 4.155 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.128 4.128 19 C 0.043 3.957 20 N -0.370 5.370 21 C -0.364 4.364 22 H 0.103 0.897 23 C -0.262 4.262 24 N -0.602 5.602 25 Si 0.807 3.193 26 H -0.216 1.216 27 H -0.220 1.220 28 H -0.190 1.190 29 C 0.006 3.994 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.249 0.751 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.133 0.867 45 H 0.122 0.878 46 H 0.019 0.981 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.084 0.916 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.547 -2.276 22.821 26.142 hybrid contribution 1.052 0.287 -1.126 1.567 sum -11.495 -1.990 21.696 24.633 Atomic orbital electron populations 1.22034 0.93256 1.03135 1.02140 1.20868 0.95133 0.95736 0.82920 0.92343 1.46012 1.65729 1.14694 1.08748 1.21409 0.77273 0.87317 0.85734 1.90683 1.50890 1.17310 1.85626 1.20328 0.96990 0.82685 0.89191 1.21874 0.89133 1.03744 1.04816 1.88135 1.24012 1.22853 1.92941 1.22996 0.80388 1.04183 0.95556 1.21184 1.01686 0.94292 0.97633 1.19841 0.95214 0.97554 0.95796 1.21354 1.01018 0.95549 0.96664 1.21489 0.95467 0.96153 1.00069 1.21367 0.98242 1.00569 0.95296 1.21150 0.99754 0.94120 0.96895 1.19652 0.98460 0.97071 0.96509 1.23435 0.96371 1.00488 0.92527 1.22130 0.94171 0.96220 0.83209 1.46380 1.05083 1.83488 1.02069 1.19451 0.91601 1.40989 0.84334 0.89725 1.25657 0.96655 1.02991 1.00938 1.70012 1.04896 1.57099 1.28232 0.85066 0.77846 0.77194 0.79157 1.21633 1.21974 1.19013 1.22684 0.87781 0.97631 0.91345 0.93474 0.90632 0.90565 0.75141 0.90785 0.90432 0.89022 0.93621 0.84890 0.87612 0.88115 0.83331 0.83308 0.84336 0.86671 0.87789 0.98051 0.93984 0.94333 0.91602 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.29 71.98 0.67 -3.02 16 2 C 0.16 4.90 2.42 44.99 0.11 5.01 16 3 H 0.06 2.18 7.37 -2.39 -0.02 2.16 16 4 N -0.70 -19.80 4.97 -442.53 -2.20 -22.00 16 5 C 0.50 15.07 5.42 87.66 0.47 15.54 16 6 O -0.57 -21.05 15.27 -3.04 -0.05 -21.10 16 7 C 0.15 3.82 0.90 -12.30 -0.01 3.81 16 8 C -0.14 -3.26 8.39 71.98 0.60 -2.65 16 9 O -0.36 -7.98 9.50 -148.98 -1.42 -9.40 16 10 C 0.04 0.76 6.72 71.97 0.48 1.24 16 11 C -0.11 -1.65 6.00 29.85 0.18 -1.47 16 12 C -0.08 -1.73 5.78 -19.85 -0.11 -1.85 16 13 C -0.13 -2.20 9.67 22.32 0.22 -1.98 16 14 C -0.11 -1.95 10.05 22.24 0.22 -1.72 16 15 C -0.14 -2.79 10.05 22.23 0.22 -2.57 16 16 C -0.10 -2.52 8.27 22.32 0.18 -2.33 16 17 C -0.12 -2.89 4.41 -19.86 -0.09 -2.98 16 18 C -0.11 -3.84 3.50 -10.13 -0.04 -3.87 16 19 C 0.17 8.14 7.07 86.48 0.61 8.75 16 20 N -0.64 -33.46 3.70 -716.70 -2.65 -36.11 16 21 C -0.24 -13.39 10.70 84.03 0.90 -12.50 16 22 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 24 N -0.95 -58.50 11.38 21.65 0.25 -58.26 16 25 Si 0.98 46.29 29.55 68.60 2.03 48.31 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 C 0.13 5.12 7.56 86.48 0.65 5.77 16 30 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.07 1.79 7.43 -2.39 -0.02 1.77 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.41 10.38 8.03 -92.71 -0.74 9.63 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.84 6.51 -2.39 -0.02 1.83 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 0.90 7.09 -2.39 -0.02 0.89 16 38 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 44 H 0.12 2.94 6.52 -2.91 -0.02 2.92 16 45 H 0.10 3.41 8.14 -2.38 -0.02 3.39 16 46 H 0.00 0.09 7.96 -2.39 -0.02 0.07 16 47 H 0.04 2.27 7.15 -2.39 -0.02 2.25 16 48 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 49 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 50 H 0.04 1.62 8.06 -2.39 -0.02 1.60 16 Total: -1.00 -74.90 397.12 1.91 -72.99 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.20 Total: 25.93 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.75 Total: -0.37 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.60 Total: -116.36 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.46 Total: -30.50 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -74.90 1.91 -72.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506683683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.555 kcal (2) G-P(sol) polarization free energy of solvation -74.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds