Wall clock time and date at job start Sat Apr 11 2020 07:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47263 * 2 1 4 4 N 1.46492 * 109.47084 * 240.00033 * 2 1 3 5 5 C 1.34779 * 120.00075 * 85.00231 * 4 2 1 6 6 O 1.21279 * 119.99961 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00132 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.20509 * 85.40310 * 7 5 4 9 9 O 1.42723 * 109.33346 * 325.81304 * 7 5 4 10 10 C 1.43207 * 113.16802 * 291.50043 * 9 7 5 11 11 C 1.52969 * 108.47683 * 289.38572 * 10 9 7 12 12 C 1.50738 * 109.75387 * 49.30516 * 11 10 9 13 13 C 1.38589 * 118.76825 * 162.90519 * 12 11 10 14 14 C 1.38076 * 120.27586 * 179.55129 * 13 12 11 15 15 C 1.38258 * 119.85974 * 359.97438 * 14 13 12 16 16 C 1.38059 * 119.90146 * 0.09821 * 15 14 13 17 17 C 1.37906 * 121.34485 * 342.66744 * 12 11 10 18 18 C 1.53005 * 109.47218 * 119.99907 * 2 1 3 19 19 C 1.53945 * 113.74162 * 281.69514 * 18 2 1 20 20 N 1.47573 * 86.11509 * 222.04792 * 19 18 2 21 21 C 1.36943 * 134.48898 * 204.63891 * 20 19 18 22 22 H 1.07997 * 119.99813 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00339 * 0.02562 * 21 20 19 24 24 N 1.31616 * 119.99609 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00168 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46910 * 90.00029 * 25 23 21 27 27 H 1.48499 * 109.47077 * 209.99624 * 25 23 21 28 28 H 1.48497 * 109.47293 * 329.99829 * 25 23 21 29 29 C 1.47573 * 91.01964 * 24.64317 * 20 19 18 30 30 H 1.08997 * 109.47322 * 60.04725 * 1 2 3 31 31 H 1.09002 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46907 * 300.04319 * 1 2 3 33 33 H 0.97005 * 120.00199 * 264.99685 * 4 2 1 34 34 H 1.08994 * 109.47181 * 179.58849 * 8 7 5 35 35 H 1.08999 * 109.46982 * 299.59541 * 8 7 5 36 36 H 1.08998 * 109.46958 * 59.59110 * 8 7 5 37 37 H 1.08997 * 109.63150 * 169.69232 * 10 9 7 38 38 H 1.09001 * 109.63758 * 49.08297 * 10 9 7 39 39 H 1.09001 * 109.42784 * 289.21719 * 11 10 9 40 40 H 1.09006 * 109.37540 * 169.36395 * 11 10 9 41 41 H 1.08001 * 119.86679 * 359.55463 * 13 12 11 42 42 H 1.07995 * 120.07104 * 179.97438 * 14 13 12 43 43 H 1.08003 * 120.05227 * 180.37680 * 15 14 13 44 44 H 1.07991 * 119.85093 * 179.97438 * 16 15 14 45 45 H 1.08998 * 112.94072 * 53.43122 * 18 2 1 46 46 H 1.09002 * 113.77007 * 336.35446 * 19 18 2 47 47 H 1.09007 * 113.76638 * 107.74467 * 19 18 2 48 48 H 0.97003 * 120.00286 * 180.02562 * 24 23 21 49 49 H 1.09000 * 113.76921 * 221.06488 * 29 20 19 50 50 H 1.08994 * 113.77068 * 89.65675 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7288 -3.5877 8 6 1.4731 -1.4115 -4.2893 9 8 3.6083 -1.7141 -3.2062 10 6 4.8261 -1.1507 -2.7058 11 6 5.5771 -0.5059 -3.8721 12 6 4.6424 0.3852 -4.6496 13 6 5.1817 1.3285 -5.5099 14 6 4.3542 2.1547 -6.2442 15 6 2.9819 2.0400 -6.1210 16 6 2.4439 1.1016 -5.2631 17 6 3.2738 0.2738 -4.5227 18 6 2.0401 -0.7212 1.2493 19 6 1.9774 0.1340 2.5278 20 7 3.3096 -0.4177 2.8418 21 6 4.0191 -0.6141 3.9965 22 1 5.0066 -1.0495 3.9560 23 6 3.4691 -0.2535 5.2189 24 7 2.2659 0.2776 5.2682 25 14 4.4367 -0.5222 6.7940 26 1 5.2519 0.6843 7.0860 27 1 3.4964 -0.7677 7.9168 28 1 5.3310 -1.6964 6.6315 29 6 3.5702 -0.6726 1.4118 30 1 -0.3634 0.5131 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5145 0.8896 33 1 2.2491 -1.6318 -1.1526 34 1 1.8301 -1.9208 -5.1843 35 1 1.0193 -2.1374 -3.6146 36 1 0.7321 -0.6625 -4.5687 37 1 5.4393 -1.9367 -2.2651 38 1 4.5983 -0.3948 -1.9542 39 1 5.9650 -1.2849 -4.5285 40 1 6.4055 0.0875 -3.4850 41 1 6.2537 1.4178 -5.6065 42 1 4.7780 2.8889 -6.9132 43 1 2.3316 2.6805 -6.6984 44 1 1.3719 1.0130 -5.1672 45 1 1.6179 -1.7194 1.3657 46 1 1.9797 1.2075 2.3388 47 1 1.1984 -0.1747 3.2251 48 1 1.8816 0.5299 6.1224 49 1 4.0629 -1.6253 1.2180 50 1 4.0404 0.1639 0.8950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506683686.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:18 Heat of formation + Delta-G solvation = -1.164314 kcal Electronic energy + Delta-G solvation = -31276.947935 eV Core-core repulsion = 27270.788056 eV Total energy + Delta-G solvation = -4006.159879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.30484 -39.26689 -38.07424 -37.57262 -34.83088 -33.98533 -32.41461 -32.14182 -30.59994 -29.89757 -28.32199 -27.47793 -25.19267 -24.63411 -24.07808 -23.88629 -22.53571 -21.41172 -20.58189 -19.85430 -18.96653 -17.77404 -17.28508 -16.78240 -16.38970 -15.79623 -15.63801 -15.18367 -14.96476 -14.79151 -14.42205 -14.11899 -14.00273 -13.81773 -13.55118 -13.44441 -13.33092 -13.09823 -12.68217 -12.47885 -12.32755 -12.24646 -12.10845 -12.01556 -11.90887 -11.59465 -11.41146 -11.22080 -11.16209 -10.90185 -10.88647 -10.65776 -10.40997 -10.34356 -9.96098 -9.81280 -9.45458 -9.32277 -8.92087 -8.83294 -8.77998 -8.76535 -6.87196 -5.76519 -3.08683 1.12065 1.24243 2.59947 3.12827 3.39088 3.43682 3.45255 3.45846 3.64793 4.30220 4.44068 4.45382 4.58482 4.66573 4.72589 4.92102 4.95075 5.02338 5.13242 5.19136 5.22782 5.25811 5.33871 5.40933 5.42159 5.46919 5.55161 5.61158 5.62956 5.67197 5.80428 5.83063 5.83496 5.89551 6.01795 6.08550 6.26653 6.27091 6.35016 6.35856 6.37411 6.45318 6.59611 6.62414 6.71319 6.81412 6.85028 7.22834 7.36729 7.56412 7.66352 7.98813 8.30223 9.05140 9.71231 10.60623 11.40673 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017334 B = 0.002710 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.934761 B =10328.197416 C =10939.169745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.086 0.914 4 N -0.708 5.708 5 C 0.496 3.504 6 O -0.530 6.530 7 C 0.143 3.857 8 C -0.135 4.135 9 O -0.357 6.357 10 C 0.052 3.948 11 C -0.115 4.115 12 C -0.067 4.067 13 C -0.124 4.124 14 C -0.112 4.112 15 C -0.127 4.127 16 C -0.080 4.080 17 C -0.095 4.095 18 C -0.146 4.146 19 C 0.176 3.824 20 N -0.611 5.611 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.403 0.597 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.254 0.746 49 H 0.041 0.959 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 -2.548 -24.654 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 H 0.104 0.896 4 N -0.359 5.359 5 C 0.279 3.721 6 O -0.406 6.406 7 C 0.100 3.900 8 C -0.192 4.192 9 O -0.276 6.276 10 C -0.025 4.025 11 C -0.152 4.152 12 C -0.067 4.067 13 C -0.142 4.142 14 C -0.130 4.130 15 C -0.145 4.145 16 C -0.098 4.098 17 C -0.095 4.095 18 C -0.166 4.166 19 C 0.050 3.950 20 N -0.337 5.337 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.000 4.000 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.238 0.762 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.107 0.893 46 H 0.045 0.955 47 H 0.093 0.907 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.364 -1.904 -24.314 24.391 hybrid contribution 0.809 -0.021 0.964 1.259 sum 1.173 -1.924 -23.350 23.459 Atomic orbital electron populations 1.22099 0.95388 1.01809 1.02224 1.21144 0.93871 0.97389 0.83147 0.89638 1.46134 1.65931 1.14450 1.09339 1.20937 0.78645 0.87463 0.85016 1.90717 1.50009 1.15390 1.84534 1.20460 0.90271 0.87960 0.91284 1.21823 0.95016 1.01213 1.01174 1.88109 1.25502 1.30801 1.83165 1.22787 0.85382 0.99391 0.94911 1.21139 0.97793 0.98665 0.97632 1.19482 0.92971 0.96749 0.97523 1.21003 0.99763 0.96166 0.97261 1.21113 0.93768 0.98913 0.99250 1.21074 0.95265 0.98752 0.99418 1.20999 0.99705 0.94370 0.94715 1.19530 0.93220 0.98404 0.98393 1.23853 0.97553 1.00760 0.94478 1.22187 0.89683 0.93795 0.89343 1.45933 1.16412 1.71754 0.99627 1.19020 0.98418 1.34837 0.82810 0.90323 1.24780 0.97055 1.01142 0.97486 1.69808 1.15315 1.47299 1.24396 0.86129 0.78780 0.77774 0.83133 1.21647 1.21611 1.20637 1.22522 0.93151 0.97529 0.86828 0.92891 0.92690 0.91093 0.76196 0.90398 0.90695 0.90192 0.87354 0.91944 0.89470 0.89450 0.85988 0.86037 0.85933 0.85809 0.89265 0.95545 0.90684 0.93631 0.94097 0.95271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.44 37.16 0.35 -1.87 16 2 C 0.15 2.33 2.29 -67.93 -0.16 2.17 16 3 H 0.09 1.56 7.48 -51.93 -0.39 1.17 16 4 N -0.71 -9.57 4.80 -53.80 -0.26 -9.83 16 5 C 0.50 7.07 5.43 -10.98 -0.06 7.01 16 6 O -0.53 -9.33 15.29 5.56 0.08 -9.25 16 7 C 0.14 1.70 0.90 -92.94 -0.08 1.62 16 8 C -0.14 -1.27 8.37 37.16 0.31 -0.96 16 9 O -0.36 -4.07 9.47 -35.23 -0.33 -4.40 16 10 C 0.05 0.55 6.71 37.14 0.25 0.80 16 11 C -0.12 -1.10 6.00 -27.88 -0.17 -1.27 16 12 C -0.07 -0.77 5.77 -104.60 -0.60 -1.38 16 13 C -0.12 -1.27 9.67 -39.51 -0.38 -1.65 16 14 C -0.11 -1.09 10.05 -39.63 -0.40 -1.49 16 15 C -0.13 -1.30 10.05 -39.64 -0.40 -1.70 16 16 C -0.08 -0.93 8.27 -39.50 -0.33 -1.25 16 17 C -0.09 -1.17 4.43 -104.62 -0.46 -1.63 16 18 C -0.15 -2.63 3.36 -89.69 -0.30 -2.93 16 19 C 0.18 4.09 6.98 -2.98 -0.02 4.07 16 20 N -0.61 -15.69 3.70 -177.95 -0.66 -16.35 16 21 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.92 -27.36 11.38 55.49 0.63 -26.73 16 25 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 C 0.13 2.54 8.37 -2.98 -0.02 2.51 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.40 4.84 8.01 -40.82 -0.33 4.52 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.70 6.55 -51.93 -0.34 0.36 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.78 7.08 -51.93 -0.37 0.41 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.12 1.32 6.52 -52.49 -0.34 0.98 16 45 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 46 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 47 H 0.07 1.92 7.15 -51.92 -0.37 1.55 16 48 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.03 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 398.42 15.07 6.00 6.00 Total: -1.00 -33.48 398.42 -10.30 -43.78 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.01 Total: 4.31 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.73 Total: -4.74 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.28 Total: -52.90 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.25 Total: -13.65 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.48 -10.30 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506683686.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.616 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds