Wall clock time and date at job start Sat Apr 11 2020 07:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47263 * 2 1 4 4 N 1.46492 * 109.47084 * 240.00033 * 2 1 3 5 5 C 1.34779 * 120.00075 * 85.00231 * 4 2 1 6 6 O 1.21279 * 119.99961 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00132 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.20509 * 85.40310 * 7 5 4 9 9 O 1.42723 * 109.33346 * 325.81304 * 7 5 4 10 10 C 1.43207 * 113.16802 * 291.50043 * 9 7 5 11 11 C 1.52969 * 108.47683 * 289.38572 * 10 9 7 12 12 C 1.50738 * 109.75387 * 49.30516 * 11 10 9 13 13 C 1.38589 * 118.76825 * 162.90519 * 12 11 10 14 14 C 1.38076 * 120.27586 * 179.55129 * 13 12 11 15 15 C 1.38258 * 119.85974 * 359.97438 * 14 13 12 16 16 C 1.38059 * 119.90146 * 0.09821 * 15 14 13 17 17 C 1.37906 * 121.34485 * 342.66744 * 12 11 10 18 18 C 1.53005 * 109.47218 * 119.99907 * 2 1 3 19 19 C 1.53945 * 113.74162 * 281.69514 * 18 2 1 20 20 N 1.47573 * 86.11509 * 222.04792 * 19 18 2 21 21 C 1.36943 * 134.48898 * 204.63891 * 20 19 18 22 22 H 1.07997 * 119.99813 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00339 * 0.02562 * 21 20 19 24 24 N 1.31616 * 119.99609 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00168 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46910 * 90.00029 * 25 23 21 27 27 H 1.48499 * 109.47077 * 209.99624 * 25 23 21 28 28 H 1.48497 * 109.47293 * 329.99829 * 25 23 21 29 29 C 1.47573 * 91.01964 * 24.64317 * 20 19 18 30 30 H 1.08997 * 109.47322 * 60.04725 * 1 2 3 31 31 H 1.09002 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46907 * 300.04319 * 1 2 3 33 33 H 0.97005 * 120.00199 * 264.99685 * 4 2 1 34 34 H 1.08994 * 109.47181 * 179.58849 * 8 7 5 35 35 H 1.08999 * 109.46982 * 299.59541 * 8 7 5 36 36 H 1.08998 * 109.46958 * 59.59110 * 8 7 5 37 37 H 1.08997 * 109.63150 * 169.69232 * 10 9 7 38 38 H 1.09001 * 109.63758 * 49.08297 * 10 9 7 39 39 H 1.09001 * 109.42784 * 289.21719 * 11 10 9 40 40 H 1.09006 * 109.37540 * 169.36395 * 11 10 9 41 41 H 1.08001 * 119.86679 * 359.55463 * 13 12 11 42 42 H 1.07995 * 120.07104 * 179.97438 * 14 13 12 43 43 H 1.08003 * 120.05227 * 180.37680 * 15 14 13 44 44 H 1.07991 * 119.85093 * 179.97438 * 16 15 14 45 45 H 1.08998 * 112.94072 * 53.43122 * 18 2 1 46 46 H 1.09002 * 113.77007 * 336.35446 * 19 18 2 47 47 H 1.09007 * 113.76638 * 107.74467 * 19 18 2 48 48 H 0.97003 * 120.00286 * 180.02562 * 24 23 21 49 49 H 1.09000 * 113.76921 * 221.06488 * 29 20 19 50 50 H 1.08994 * 113.77068 * 89.65675 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7288 -3.5877 8 6 1.4731 -1.4115 -4.2893 9 8 3.6083 -1.7141 -3.2062 10 6 4.8261 -1.1507 -2.7058 11 6 5.5771 -0.5059 -3.8721 12 6 4.6424 0.3852 -4.6496 13 6 5.1817 1.3285 -5.5099 14 6 4.3542 2.1547 -6.2442 15 6 2.9819 2.0400 -6.1210 16 6 2.4439 1.1016 -5.2631 17 6 3.2738 0.2738 -4.5227 18 6 2.0401 -0.7212 1.2493 19 6 1.9774 0.1340 2.5278 20 7 3.3096 -0.4177 2.8418 21 6 4.0191 -0.6141 3.9965 22 1 5.0066 -1.0495 3.9560 23 6 3.4691 -0.2535 5.2189 24 7 2.2659 0.2776 5.2682 25 14 4.4367 -0.5222 6.7940 26 1 5.2519 0.6843 7.0860 27 1 3.4964 -0.7677 7.9168 28 1 5.3310 -1.6964 6.6315 29 6 3.5702 -0.6726 1.4118 30 1 -0.3634 0.5131 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5145 0.8896 33 1 2.2491 -1.6318 -1.1526 34 1 1.8301 -1.9208 -5.1843 35 1 1.0193 -2.1374 -3.6146 36 1 0.7321 -0.6625 -4.5687 37 1 5.4393 -1.9367 -2.2651 38 1 4.5983 -0.3948 -1.9542 39 1 5.9650 -1.2849 -4.5285 40 1 6.4055 0.0875 -3.4850 41 1 6.2537 1.4178 -5.6065 42 1 4.7780 2.8889 -6.9132 43 1 2.3316 2.6805 -6.6984 44 1 1.3719 1.0130 -5.1672 45 1 1.6179 -1.7194 1.3657 46 1 1.9797 1.2075 2.3388 47 1 1.1984 -0.1747 3.2251 48 1 1.8816 0.5299 6.1224 49 1 4.0629 -1.6253 1.2180 50 1 4.0404 0.1639 0.8950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506683686.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:17 Heat of formation + Delta-G solvation = -21.590353 kcal Electronic energy + Delta-G solvation = -31277.833674 eV Core-core repulsion = 27270.788056 eV Total energy + Delta-G solvation = -4007.045618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.24002 -40.50785 -39.47246 -38.50911 -36.23599 -34.81436 -34.13581 -33.20833 -31.87353 -30.76528 -29.35353 -29.08308 -26.68708 -25.97032 -25.48631 -24.79440 -23.67033 -22.52938 -21.71574 -21.16449 -20.26852 -18.80262 -18.74966 -18.16687 -17.40874 -17.00572 -16.71637 -16.48281 -16.23367 -15.95016 -15.80503 -15.35007 -15.13177 -15.00461 -14.72856 -14.55757 -14.24150 -14.12235 -14.05324 -13.52334 -13.35795 -13.27980 -13.20662 -13.10599 -13.07045 -12.97601 -12.83971 -12.69153 -12.66181 -12.37374 -12.06154 -11.97103 -11.81288 -11.70350 -11.57291 -11.29397 -11.20977 -10.87650 -10.40748 -10.07227 -9.72544 -9.56590 -8.93525 -7.91333 -5.25186 0.31853 0.45664 1.44856 1.46952 1.48917 1.55615 2.05871 2.46585 2.58201 2.82847 3.28607 3.37948 3.47139 3.57548 3.68279 3.81278 3.83264 3.94403 3.95043 4.16396 4.23026 4.24275 4.26369 4.42863 4.52040 4.53358 4.54709 4.62484 4.68181 4.74408 4.74554 4.81542 4.83995 4.86782 4.90307 4.93534 5.05541 5.08035 5.11674 5.15725 5.23556 5.28645 5.49161 5.49907 5.52868 5.58429 5.58696 5.62937 5.86824 5.93131 6.06715 6.55754 6.91143 7.19027 7.59789 8.55397 9.25613 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017334 B = 0.002710 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.934761 B =10328.197416 C =10939.169745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 H 0.057 0.943 4 N -0.698 5.698 5 C 0.497 3.503 6 O -0.567 6.567 7 C 0.149 3.851 8 C -0.134 4.134 9 O -0.357 6.357 10 C 0.047 3.953 11 C -0.112 4.112 12 C -0.087 4.087 13 C -0.132 4.132 14 C -0.116 4.116 15 C -0.136 4.136 16 C -0.097 4.097 17 C -0.118 4.118 18 C -0.110 4.110 19 C 0.172 3.828 20 N -0.642 5.642 21 C -0.237 4.237 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.979 3.021 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.130 3.870 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.414 0.586 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.038 0.962 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.125 0.875 45 H 0.105 0.895 46 H 0.009 0.991 47 H 0.047 0.953 48 H 0.249 0.751 49 H 0.063 0.937 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.654 -3.905 -26.306 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.075 0.925 4 N -0.349 5.349 5 C 0.282 3.718 6 O -0.446 6.446 7 C 0.106 3.894 8 C -0.191 4.191 9 O -0.275 6.275 10 C -0.029 4.029 11 C -0.149 4.149 12 C -0.087 4.087 13 C -0.150 4.150 14 C -0.134 4.134 15 C -0.154 4.154 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.129 4.129 19 C 0.046 3.954 20 N -0.368 5.368 21 C -0.365 4.365 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.807 3.193 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.190 1.190 29 C 0.005 3.995 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.251 0.749 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.148 0.852 38 H 0.057 0.943 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.143 0.857 45 H 0.124 0.876 46 H 0.026 0.974 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.486 -3.298 -26.005 26.255 hybrid contribution 0.511 0.461 1.407 1.567 sum 1.997 -2.836 -24.597 24.841 Atomic orbital electron populations 1.22031 0.93878 1.03055 1.01901 1.20779 0.94890 0.95663 0.83036 0.92454 1.45954 1.65675 1.14784 1.08518 1.21456 0.77681 0.87028 0.85610 1.90697 1.51609 1.17114 1.85144 1.20428 0.91058 0.88051 0.89888 1.21869 0.94232 1.01375 1.01608 1.88108 1.25694 1.30647 1.83090 1.22910 0.85516 0.99573 0.94894 1.21168 0.97541 0.98920 0.97290 1.19833 0.93123 0.97555 0.98204 1.21336 1.01055 0.95743 0.96850 1.21483 0.93609 0.99064 0.99207 1.21396 0.96105 0.98640 0.99280 1.21175 0.99929 0.94997 0.95364 1.19714 0.93918 0.99158 0.99095 1.23462 0.96127 1.00347 0.93002 1.22076 0.88353 0.93527 0.91475 1.46356 1.17324 1.71968 1.01172 1.19443 0.98788 1.34162 0.84114 0.89802 1.25646 0.98140 1.01561 1.00725 1.70001 1.16877 1.48687 1.24656 0.85070 0.77404 0.77948 0.78868 1.21619 1.21928 1.19022 1.22641 0.94777 0.98278 0.83832 0.92815 0.90618 0.91849 0.74931 0.89255 0.89760 0.89912 0.85234 0.94345 0.87886 0.88441 0.83900 0.83509 0.84014 0.85734 0.87643 0.97360 0.93453 0.94231 0.91922 0.95361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.44 71.98 0.68 -3.46 16 2 C 0.16 5.00 2.29 45.00 0.10 5.10 16 3 H 0.06 2.14 7.48 -2.39 -0.02 2.13 16 4 N -0.70 -18.12 4.80 -442.53 -2.12 -20.25 16 5 C 0.50 13.92 5.43 87.66 0.48 14.39 16 6 O -0.57 -20.18 15.29 -3.03 -0.05 -20.22 16 7 C 0.15 3.37 0.90 -12.30 -0.01 3.36 16 8 C -0.13 -2.30 8.37 71.98 0.60 -1.70 16 9 O -0.36 -7.51 9.47 -148.98 -1.41 -8.92 16 10 C 0.05 0.92 6.71 71.97 0.48 1.41 16 11 C -0.11 -1.95 6.00 29.85 0.18 -1.77 16 12 C -0.09 -1.89 5.77 -19.85 -0.11 -2.01 16 13 C -0.13 -2.47 9.67 22.32 0.22 -2.25 16 14 C -0.12 -2.04 10.05 22.24 0.22 -1.81 16 15 C -0.14 -2.63 10.05 22.23 0.22 -2.41 16 16 C -0.10 -2.19 8.27 22.32 0.18 -2.01 16 17 C -0.12 -2.82 4.43 -19.86 -0.09 -2.91 16 18 C -0.11 -3.88 3.36 -10.13 -0.03 -3.91 16 19 C 0.17 8.22 6.98 86.48 0.60 8.82 16 20 N -0.64 -33.23 3.70 -716.91 -2.65 -35.88 16 21 C -0.24 -13.42 10.70 84.03 0.90 -12.52 16 22 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 24 N -0.95 -58.09 11.38 21.65 0.25 -57.84 16 25 Si 0.98 46.00 29.55 68.60 2.03 48.02 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 C 0.13 5.13 8.37 86.48 0.72 5.85 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.84 8.09 -2.39 -0.02 1.82 16 33 H 0.41 9.10 8.01 -92.70 -0.74 8.36 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.37 6.55 -2.39 -0.02 1.35 16 37 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.04 0.93 7.08 -2.39 -0.02 0.92 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.12 2.65 6.52 -2.92 -0.02 2.63 16 45 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 46 H 0.01 0.44 8.03 -2.39 -0.02 0.42 16 47 H 0.05 2.51 7.15 -2.38 -0.02 2.50 16 48 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 49 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 50 H 0.03 1.15 8.10 -2.39 -0.02 1.13 16 Total: -1.00 -73.67 398.42 2.05 -71.62 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.20 Total: 24.72 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.82 Total: -1.26 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -4.53 Total: -113.97 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.46 Total: -29.14 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -73.67 2.05 -71.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506683686.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.028 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds