Wall clock time and date at job start Sat Apr 11 2020 07:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47181 * 2 1 4 4 C 1.53001 * 109.46742 * 119.99786 * 2 1 3 5 5 H 1.09000 * 109.47232 * 300.58042 * 4 2 1 6 6 C 1.50702 * 109.47154 * 60.58596 * 4 2 1 7 7 O 1.21274 * 120.00327 * 83.88427 * 6 4 2 8 8 N 1.34780 * 119.99274 * 263.87907 * 6 4 2 9 9 C 1.46493 * 120.00624 * 354.93774 * 8 6 4 10 10 C 1.46509 * 119.99326 * 174.93159 * 8 6 4 11 11 H 1.08991 * 109.46910 * 0.02562 * 10 8 6 12 12 C 1.53000 * 109.46968 * 240.00294 * 10 8 6 13 13 C 1.50697 * 109.46842 * 120.00500 * 10 8 6 14 14 H 1.08008 * 120.00123 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99787 * 179.97438 * 13 10 8 16 16 N 1.31512 * 120.00437 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 119.99880 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47225 * 89.99821 * 17 15 13 19 19 H 1.48497 * 109.47214 * 209.99974 * 17 15 13 20 20 H 1.48505 * 109.46991 * 329.99574 * 17 15 13 21 21 N 1.46500 * 109.47061 * 180.58189 * 4 2 1 22 22 C 1.46731 * 125.62431 * 119.99768 * 21 4 2 23 23 C 1.50835 * 106.25003 * 179.97438 * 22 21 4 24 24 C 1.37583 * 133.23509 * 179.97438 * 23 22 21 25 25 C 1.38477 * 119.95130 * 179.97438 * 24 23 22 26 26 C 1.38379 * 120.19075 * 0.03832 * 25 24 23 27 27 C 1.37947 * 120.32105 * 359.97438 * 26 25 24 28 28 C 1.39623 * 119.82623 * 359.97438 * 27 26 25 29 29 C 1.34425 * 125.62556 * 299.69311 * 21 4 2 30 30 O 1.21551 * 124.85176 * 0.02562 * 29 21 4 31 31 H 1.09005 * 109.47462 * 306.60318 * 1 2 3 32 32 H 1.09007 * 109.47094 * 66.60362 * 1 2 3 33 33 H 1.08997 * 109.47146 * 186.60076 * 1 2 3 34 34 H 1.08998 * 109.46971 * 239.99782 * 2 1 3 35 35 H 1.08995 * 109.46865 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47113 * 299.99841 * 3 2 1 37 37 H 1.08997 * 109.46859 * 59.99808 * 3 2 1 38 38 H 1.09000 * 109.46913 * 275.99963 * 9 8 6 39 39 H 1.09002 * 109.47382 * 35.99483 * 9 8 6 40 40 H 1.08997 * 109.47679 * 155.99836 * 9 8 6 41 41 H 1.09005 * 109.46938 * 300.00166 * 12 10 8 42 42 H 1.08994 * 109.46991 * 180.02562 * 12 10 8 43 43 H 1.08997 * 109.47186 * 60.00246 * 12 10 8 44 44 H 0.96999 * 120.00406 * 179.97438 * 16 15 13 45 45 H 1.09001 * 110.10148 * 299.17385 * 22 21 4 46 46 H 1.08999 * 110.09827 * 60.78794 * 22 21 4 47 47 H 1.07998 * 120.02037 * 0.02562 * 24 23 22 48 48 H 1.07999 * 119.90058 * 179.97438 * 25 24 23 49 49 H 1.07994 * 119.84071 * 180.02562 * 26 25 24 50 50 H 1.07997 * 120.08562 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6681 -0.2134 2.1392 6 6 1.5494 -2.1462 1.2421 7 8 2.1573 -2.9936 0.6231 8 7 0.4352 -2.4787 1.9237 9 6 -0.2366 -1.4815 2.7606 10 6 -0.1042 -3.8374 1.8274 11 1 0.5248 -4.4318 1.1649 12 6 -1.5270 -3.7828 1.2674 13 6 -0.1270 -4.4670 3.1964 14 1 0.2255 -3.9108 4.0525 15 6 -0.5978 -5.7530 3.3560 16 7 -1.0274 -6.4301 2.3136 17 14 -0.6254 -6.5336 5.0528 18 1 -1.9242 -6.2418 5.7109 19 1 -0.4547 -8.0032 4.9245 20 1 0.4809 -5.9765 5.8720 21 7 3.5048 -0.7091 1.2564 22 6 4.3495 -0.1092 2.2954 23 6 5.7766 -0.3467 1.8685 24 6 6.9928 -0.0219 2.4235 25 6 8.1648 -0.3848 1.7815 26 6 8.1168 -1.0731 0.5820 27 6 6.9025 -1.4035 0.0168 28 6 5.7165 -1.0420 0.6587 29 6 4.2969 -1.2509 0.3151 30 8 3.9003 -1.8286 -0.6781 31 1 -0.3634 0.6128 0.8250 32 1 -0.3634 0.4081 -0.9432 33 1 -0.3633 -1.0208 0.1181 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 0.2435 -1.4452 3.7385 39 1 -0.1680 -0.5028 2.2857 40 1 -1.2849 -1.7545 2.8805 41 1 -2.1558 -3.1883 1.9303 42 1 -1.9284 -4.7936 1.1962 43 1 -1.5105 -3.3274 0.2772 44 1 -1.3583 -7.3350 2.4259 45 1 4.1530 0.9606 2.3666 46 1 4.1609 -0.5899 3.2553 47 1 7.0334 0.5151 3.3597 48 1 9.1191 -0.1290 2.2177 49 1 9.0343 -1.3538 0.0863 50 1 6.8695 -1.9411 -0.9193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548529689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:38 Heat of formation + Delta-G solvation = -38.751920 kcal Electronic energy + Delta-G solvation = -31807.201818 eV Core-core repulsion = 27799.412018 eV Total energy + Delta-G solvation = -4007.789800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40591 -40.84051 -39.00238 -37.54981 -37.08612 -36.24170 -34.70519 -32.24120 -32.00185 -31.45423 -28.49037 -28.13602 -27.60377 -27.43165 -27.27810 -24.32792 -23.14372 -22.72131 -21.68181 -20.99559 -19.64033 -18.69643 -18.33265 -17.75451 -17.55504 -17.24069 -16.86938 -16.70112 -16.10611 -16.03949 -15.51093 -15.27657 -14.94032 -14.80946 -14.57370 -14.41273 -14.28530 -14.06030 -14.03071 -13.78656 -13.59554 -13.52130 -13.32211 -13.24432 -12.98144 -12.84836 -12.74060 -12.68527 -12.57689 -12.21964 -12.17208 -12.15624 -12.05227 -12.03427 -11.74888 -11.19805 -10.95823 -10.64527 -10.53714 -10.02883 -9.86342 -9.54378 -9.29639 -8.15760 -6.33392 -0.16492 0.35010 1.37639 1.40552 1.44744 1.50877 1.89697 1.95469 2.31431 2.50093 2.86090 3.11572 3.14570 3.42585 3.64245 3.74053 3.79759 3.93768 4.14429 4.17369 4.21030 4.34312 4.41542 4.45887 4.49910 4.55139 4.58886 4.65924 4.75434 4.76169 4.78971 4.84998 4.92152 4.93583 5.00653 5.02600 5.06202 5.15338 5.18768 5.34838 5.36515 5.38573 5.43705 5.46154 5.57179 5.65459 5.67437 5.92130 6.01448 6.05365 6.14693 6.75258 6.81661 7.18202 7.32648 7.50801 8.88488 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.003607 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.191999 B = 7761.860939 C = 8984.507225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.127 4.127 4 C 0.166 3.834 5 H 0.150 0.850 6 C 0.478 3.522 7 O -0.583 6.583 8 N -0.596 5.596 9 C 0.072 3.928 10 C 0.265 3.735 11 H -0.007 1.007 12 C -0.130 4.130 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.968 3.032 18 H -0.263 1.263 19 H -0.289 1.289 20 H -0.270 1.270 21 N -0.607 5.607 22 C 0.137 3.863 23 C -0.082 4.082 24 C -0.096 4.096 25 C -0.081 4.081 26 C -0.127 4.127 27 C -0.074 4.074 28 C -0.192 4.192 29 C 0.539 3.461 30 O -0.554 6.554 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.016 0.984 44 H 0.263 0.737 45 H 0.139 0.861 46 H 0.107 0.893 47 H 0.171 0.829 48 H 0.172 0.828 49 H 0.157 0.843 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.934 23.635 4.812 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.184 4.184 4 C 0.060 3.940 5 H 0.167 0.833 6 C 0.265 3.735 7 O -0.462 6.462 8 N -0.327 5.327 9 C -0.070 4.070 10 C 0.163 3.837 11 H 0.011 0.989 12 C -0.188 4.188 13 C -0.574 4.574 14 H 0.081 0.919 15 C -0.188 4.188 16 N -0.560 5.560 17 Si 0.792 3.208 18 H -0.188 1.188 19 H -0.215 1.215 20 H -0.195 1.195 21 N -0.339 5.339 22 C 0.017 3.983 23 C -0.083 4.083 24 C -0.114 4.114 25 C -0.098 4.098 26 C -0.145 4.145 27 C -0.093 4.093 28 C -0.196 4.196 29 C 0.329 3.671 30 O -0.432 6.432 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.157 0.843 46 H 0.124 0.876 47 H 0.188 0.812 48 H 0.190 0.810 49 H 0.174 0.826 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.810 22.714 3.940 26.373 hybrid contribution -0.344 -1.853 -0.112 1.888 sum 12.466 20.861 3.828 24.602 Atomic orbital electron populations 1.21994 0.92653 1.01855 1.04187 1.21352 0.97425 0.97935 0.95277 1.21703 1.00472 0.92311 1.03963 1.21122 0.78181 0.91647 1.03062 0.83309 1.21643 0.80982 0.91723 0.79139 1.90749 1.57308 1.52990 1.45134 1.48219 1.26018 1.13218 1.45290 1.22070 0.98924 0.91438 0.94568 1.18446 0.90979 0.78624 0.95638 0.98852 1.21863 0.98107 1.02097 0.96752 1.21573 1.42438 0.99730 0.93653 0.91939 1.25806 0.94645 0.97418 1.00925 1.70047 1.42978 1.11592 1.31338 0.85416 0.78969 0.77092 0.79287 1.18769 1.21451 1.19470 1.47762 1.04703 1.57400 1.24070 1.20858 0.84901 1.01604 0.90977 1.20725 0.96158 0.97254 0.94174 1.20771 0.88946 1.00332 1.01371 1.21828 0.99728 0.94598 0.93681 1.21442 0.96867 0.99107 0.97058 1.21030 0.91485 0.97429 0.99399 1.20543 0.93108 1.05804 1.00121 1.18927 0.87453 0.77779 0.82987 1.90756 1.80559 1.42048 1.29817 0.88322 0.91025 0.94771 0.94250 0.93668 0.91427 0.88976 0.92064 0.88451 0.90533 0.92686 0.91647 0.96520 0.92741 0.84319 0.87559 0.81178 0.81011 0.82585 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 7.82 71.98 0.56 -3.14 16 2 C -0.10 -2.86 2.37 -10.79 -0.03 -2.89 16 3 C -0.13 -2.43 9.03 71.98 0.65 -1.78 16 4 C 0.17 5.16 1.91 44.25 0.08 5.24 16 5 H 0.15 3.20 6.16 -2.39 -0.01 3.19 16 6 C 0.48 21.68 5.79 87.66 0.51 22.18 16 7 O -0.58 -34.47 13.37 18.40 0.25 -34.22 16 8 N -0.60 -26.01 2.16 -826.81 -1.78 -27.79 16 9 C 0.07 2.15 8.43 127.77 1.08 3.23 16 10 C 0.27 14.54 2.62 44.24 0.12 14.65 16 11 H -0.01 -0.44 6.91 -2.39 -0.02 -0.46 16 12 C -0.13 -6.50 8.96 71.98 0.64 -5.86 16 13 C -0.54 -30.03 8.37 25.60 0.21 -29.82 16 14 H 0.06 3.36 7.65 -2.91 -0.02 3.34 16 15 C 0.01 0.63 5.30 84.65 0.45 1.08 16 16 N -0.92 -55.30 11.32 21.45 0.24 -55.06 16 17 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 N -0.61 -18.97 2.04 -809.78 -1.65 -20.63 16 22 C 0.14 2.67 7.36 85.63 0.63 3.30 16 23 C -0.08 -1.74 6.38 -19.63 -0.13 -1.87 16 24 C -0.10 -1.29 10.03 22.17 0.22 -1.07 16 25 C -0.08 -0.99 10.05 22.36 0.22 -0.76 16 26 C -0.13 -2.19 10.02 22.23 0.22 -1.96 16 27 C -0.07 -1.99 10.10 22.54 0.23 -1.77 16 28 C -0.19 -5.95 6.26 -20.14 -0.13 -6.07 16 29 C 0.54 21.44 6.95 86.75 0.60 22.04 16 30 O -0.55 -28.38 14.58 17.54 0.26 -28.12 16 31 H 0.10 1.64 6.89 -2.38 -0.02 1.62 16 32 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.03 1.10 6.11 -2.39 -0.01 1.08 16 34 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 35 H 0.04 0.95 7.59 -2.39 -0.02 0.93 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 2.05 3.88 -2.39 -0.01 2.04 16 40 H 0.08 2.35 6.44 -2.39 -0.02 2.34 16 41 H 0.05 2.42 6.67 -2.38 -0.02 2.41 16 42 H 0.06 3.66 6.07 -2.39 -0.01 3.64 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 48 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 49 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 50 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -93.72 390.92 6.44 -87.28 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.95 Total: 17.70 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 6.16 Total: 14.75 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -3.19 Total: -103.48 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: 0.50 Total: -62.35 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -93.72 6.44 -87.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548529689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.528 kcal (2) G-P(sol) polarization free energy of solvation -93.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds