Wall clock time and date at job start Sat Apr 11 2020 07:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.52995 * 109.47082 * 119.99836 * 2 1 3 5 5 N 1.46900 * 109.47149 * 175.00026 * 4 2 1 6 6 C 1.46893 * 111.00116 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47154 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47304 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.48221 * 305.02235 * 8 7 6 10 10 C 1.53090 * 109.48094 * 185.00155 * 8 7 6 11 11 C 1.53184 * 109.16199 * 182.40965 * 10 8 7 12 12 C 1.53176 * 109.03902 * 56.97643 * 11 10 8 13 13 C 1.53088 * 109.16137 * 303.01798 * 12 11 10 14 14 O 1.42901 * 109.48350 * 65.05597 * 8 7 6 15 15 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 16 16 C 1.46499 * 120.00062 * 300.00045 * 15 2 1 17 17 C 1.34779 * 119.99726 * 119.99799 * 15 2 1 18 18 O 1.21279 * 120.00410 * 359.97438 * 17 15 2 19 19 C 1.50703 * 119.99541 * 179.97438 * 17 15 2 20 20 S 1.81004 * 109.46790 * 180.02562 * 19 17 15 21 21 C 1.76197 * 99.99958 * 180.02562 * 20 19 17 22 22 H 1.08008 * 119.99914 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00243 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99782 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00188 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47104 * 89.99919 * 25 23 21 27 27 H 1.48498 * 109.46993 * 210.00231 * 25 23 21 28 28 H 1.48504 * 109.47061 * 330.00171 * 25 23 21 29 29 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 30 30 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 31 31 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47154 * 295.00093 * 4 2 1 33 33 H 1.09000 * 109.47200 * 55.00483 * 4 2 1 34 34 H 1.00907 * 110.99958 * 56.04427 * 5 4 2 35 35 H 1.08998 * 109.47171 * 299.99783 * 6 5 4 36 36 H 1.09000 * 109.47109 * 60.00181 * 6 5 4 37 37 H 1.09003 * 109.46894 * 300.00294 * 7 6 5 38 38 H 1.09000 * 109.47146 * 59.99982 * 7 6 5 39 39 H 1.09000 * 109.52015 * 302.31011 * 10 8 7 40 40 H 1.08993 * 109.52738 * 62.43446 * 10 8 7 41 41 H 1.08996 * 109.54397 * 176.84942 * 11 10 8 42 42 H 1.09002 * 109.53990 * 297.10617 * 11 10 8 43 43 H 1.08996 * 109.52086 * 62.92780 * 12 11 10 44 44 H 1.09005 * 109.52088 * 183.11498 * 12 11 10 45 45 H 1.09004 * 109.47836 * 177.59189 * 13 12 11 46 46 H 1.08997 * 109.48454 * 297.62454 * 13 12 11 47 47 H 1.09002 * 109.47391 * 89.99876 * 16 15 2 48 48 H 1.09001 * 109.46813 * 329.99933 * 16 15 2 49 49 H 1.09004 * 109.47041 * 210.00060 * 16 15 2 50 50 H 1.08996 * 109.47057 * 299.99739 * 19 17 15 51 51 H 1.08996 * 109.47084 * 60.00703 * 19 17 15 52 52 H 0.96994 * 120.00208 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5041 -0.8266 1.1904 6 6 4.0303 -1.5158 2.3761 7 6 5.5547 -1.6056 2.2792 8 6 6.1027 -2.3239 3.5139 9 1 5.7533 -1.8180 4.4139 10 6 7.6331 -2.3041 3.4787 11 6 8.1738 -3.0768 4.6858 12 6 7.6101 -4.5009 4.6608 13 6 6.0807 -4.4357 4.6504 14 8 5.6452 -3.6777 3.5199 15 7 2.0184 -0.6906 -1.1962 16 6 1.6645 -2.0932 -1.4281 17 6 2.7932 -0.0355 -2.0833 18 8 3.0858 1.1257 -1.8917 19 6 3.2960 -0.7461 -3.3135 20 16 4.3021 0.3915 -4.2985 21 6 4.7446 -0.6693 -5.6339 22 1 4.3934 -1.6906 -5.6516 23 6 5.5437 -0.1924 -6.6638 24 7 5.9712 1.0524 -6.6425 25 14 6.0122 -1.3168 -8.0799 26 1 4.9932 -1.2101 -9.1547 27 1 7.3384 -0.9145 -8.6134 28 1 6.0776 -2.7197 -7.5973 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 3.9281 0.0827 1.0823 35 1 3.7558 -0.9587 3.2719 36 1 3.6095 -2.5199 2.4294 37 1 5.8296 -2.1624 1.3834 38 1 5.9751 -0.6013 2.2262 39 1 7.9824 -2.7740 2.5593 40 1 7.9851 -1.2733 3.5174 41 1 9.2620 -3.1145 4.6369 42 1 7.8660 -2.5788 5.6052 43 1 7.9590 -5.0150 3.7653 44 1 7.9457 -5.0410 5.5462 45 1 5.6742 -5.4453 4.5895 46 1 5.7309 -3.9576 5.5654 47 1 0.7376 -2.1444 -1.9994 48 1 1.5296 -2.5968 -0.4709 49 1 2.4630 -2.5818 -1.9864 50 1 3.9018 -1.6022 -3.0165 51 1 2.4485 -1.0890 -3.9070 52 1 6.5293 1.3859 -7.3623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568259997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:50 Heat of formation + Delta-G solvation = -98.489902 kcal Electronic energy + Delta-G solvation = -28254.541531 eV Core-core repulsion = 24379.605249 eV Total energy + Delta-G solvation = -3874.936282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.78806 -39.52517 -37.00625 -35.32852 -33.92406 -33.14175 -32.36109 -31.69837 -29.01056 -28.50492 -26.61860 -25.78269 -25.40864 -24.49041 -23.02622 -21.66281 -21.14022 -20.53685 -18.88525 -17.61592 -16.90645 -16.68838 -16.38012 -15.99198 -15.43019 -15.09611 -15.03431 -14.89932 -14.74356 -14.48110 -14.23309 -13.98775 -13.77015 -13.27552 -13.12387 -13.01489 -12.83928 -12.70870 -12.58225 -12.29591 -12.23717 -12.11260 -11.89655 -11.76139 -11.58534 -11.44920 -11.29641 -11.08871 -11.01196 -10.96766 -10.94643 -10.82495 -10.69028 -10.48940 -9.72557 -9.68949 -9.16974 -9.00072 -8.45092 -8.27783 -8.12697 -6.40891 -6.15091 -3.84132 3.08137 3.25855 3.27128 3.31609 3.35765 3.49533 3.73028 3.96592 4.27433 4.45462 4.48759 4.53313 4.61927 4.73826 4.84375 4.97731 5.05223 5.07894 5.11239 5.17089 5.19866 5.20475 5.26583 5.29179 5.33835 5.38731 5.43967 5.45706 5.53449 5.55674 5.58450 5.63653 5.66997 5.69734 5.71227 5.76942 5.90286 5.91900 5.98089 6.01808 6.08249 6.12313 6.14825 6.28649 6.82936 6.97732 7.01435 7.34236 7.66182 7.76705 8.42129 8.76780 9.30306 10.92374 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008675 B = 0.002534 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.936754 B =11045.091903 C =13313.323245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.099 0.901 4 C 0.052 3.948 5 N -0.683 5.683 6 C 0.067 3.933 7 C -0.112 4.112 8 C 0.094 3.906 9 H 0.054 0.946 10 C -0.152 4.152 11 C -0.123 4.123 12 C -0.158 4.158 13 C 0.061 3.939 14 O -0.375 6.375 15 N -0.602 5.602 16 C 0.088 3.912 17 C 0.541 3.459 18 O -0.525 6.525 19 C -0.147 4.147 20 S -0.064 6.064 21 C -0.532 4.532 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.869 5.869 25 Si 0.917 3.083 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.344 0.656 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.047 0.953 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.085 0.915 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 -9.901 25.479 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.117 0.883 4 C -0.078 4.078 5 N -0.314 5.314 6 C -0.062 4.062 7 C -0.149 4.149 8 C 0.036 3.964 9 H 0.072 0.928 10 C -0.190 4.190 11 C -0.160 4.160 12 C -0.195 4.195 13 C -0.016 4.016 14 O -0.294 6.294 15 N -0.337 5.337 16 C -0.056 4.056 17 C 0.329 3.671 18 O -0.401 6.401 19 C -0.298 4.298 20 S 0.163 5.837 21 C -0.680 4.680 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.163 0.837 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.107 0.893 51 H 0.103 0.897 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.038 -8.692 25.138 26.903 hybrid contribution 0.076 -1.457 -0.164 1.469 sum -3.962 -10.149 24.974 27.247 Atomic orbital electron populations 1.22087 0.94925 1.02229 1.02452 1.20992 0.93509 0.98063 0.84163 0.88299 1.22306 0.88723 1.00596 0.96210 1.60306 1.04755 1.26287 1.40032 1.21870 0.94692 0.99356 0.90323 1.21593 0.95240 1.00346 0.97759 1.22077 0.92991 0.83029 0.98272 0.92800 1.22217 0.96048 1.01322 0.99392 1.21585 1.00698 0.95475 0.98247 1.22199 0.96848 0.97591 1.02893 1.22532 0.93662 0.96402 0.88979 1.87978 1.73769 1.22886 1.44800 1.47576 1.51795 1.12107 1.22204 1.21617 1.00475 0.82040 1.01469 1.20188 0.76849 0.86621 0.83447 1.90654 1.56566 1.16814 1.76040 1.23525 1.04046 1.04582 0.97613 1.85335 1.61214 1.15487 1.21638 1.22872 1.37036 0.99750 1.08368 0.91034 1.24981 0.95184 0.95520 0.97935 1.70023 1.33376 1.14390 1.32637 0.86190 0.77917 0.80291 0.81239 1.20336 1.20819 1.19692 0.91813 0.91818 0.92347 0.94697 0.90872 0.83713 0.96081 0.90498 0.89806 0.90540 0.90652 0.90773 0.91438 0.92025 0.90907 0.91090 0.89003 0.93525 0.93426 0.91588 0.90893 0.89253 0.89651 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.20 37.16 0.34 -1.21 16 2 C 0.14 1.68 2.88 -67.93 -0.20 1.49 16 3 H 0.10 1.44 6.90 -51.93 -0.36 1.08 16 4 C 0.05 0.54 4.93 -3.83 -0.02 0.52 16 5 N -0.68 -8.07 6.22 -113.79 -0.71 -8.78 16 6 C 0.07 0.68 5.58 -3.83 -0.02 0.66 16 7 C -0.11 -1.13 5.18 -26.73 -0.14 -1.27 16 8 C 0.09 0.85 2.64 -26.69 -0.07 0.78 16 9 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 10 C -0.15 -1.25 5.42 -26.59 -0.14 -1.40 16 11 C -0.12 -0.85 6.03 -26.55 -0.16 -1.01 16 12 C -0.16 -1.07 6.14 -26.59 -0.16 -1.23 16 13 C 0.06 0.46 6.84 37.20 0.25 0.71 16 14 O -0.38 -3.84 9.94 -35.23 -0.35 -4.20 16 15 N -0.60 -8.79 2.49 -173.93 -0.43 -9.22 16 16 C 0.09 1.03 9.30 59.85 0.56 1.59 16 17 C 0.54 10.57 7.69 -10.98 -0.08 10.49 16 18 O -0.53 -12.09 15.19 5.56 0.08 -12.00 16 19 C -0.15 -3.12 4.71 36.01 0.17 -2.95 16 20 S -0.06 -1.76 20.57 -107.50 -2.21 -3.98 16 21 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 22 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 25 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.50 7.67 -51.93 -0.40 0.11 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.72 6.88 -51.93 -0.36 0.36 16 34 H 0.34 4.40 8.73 -39.29 -0.34 4.06 16 35 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.85 7.83 -51.93 -0.41 0.44 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.66 6.53 -51.93 -0.34 0.32 16 49 H 0.07 0.91 6.44 -51.93 -0.33 0.57 16 50 H 0.09 1.81 7.40 -51.92 -0.38 1.42 16 51 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 52 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 422.91 15.07 6.37 6.37 Total: -1.00 -34.27 422.91 -10.66 -44.94 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -9.65 Total: 1.93 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 0.52 Total: -5.97 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.41 Total: -43.84 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.27 Total: -16.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.98 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.27 -10.66 -44.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568259997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.554 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds