Wall clock time and date at job start Sat Apr 11 2020 07:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.52995 * 109.47082 * 119.99836 * 2 1 3 5 5 N 1.46900 * 109.47149 * 175.00026 * 4 2 1 6 6 C 1.46893 * 111.00116 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47154 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47304 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.48221 * 305.02235 * 8 7 6 10 10 C 1.53090 * 109.48094 * 185.00155 * 8 7 6 11 11 C 1.53184 * 109.16199 * 182.40965 * 10 8 7 12 12 C 1.53176 * 109.03902 * 56.97643 * 11 10 8 13 13 C 1.53088 * 109.16137 * 303.01798 * 12 11 10 14 14 O 1.42901 * 109.48350 * 65.05597 * 8 7 6 15 15 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 16 16 C 1.46499 * 120.00062 * 300.00045 * 15 2 1 17 17 C 1.34779 * 119.99726 * 119.99799 * 15 2 1 18 18 O 1.21279 * 120.00410 * 359.97438 * 17 15 2 19 19 C 1.50703 * 119.99541 * 179.97438 * 17 15 2 20 20 S 1.81004 * 109.46790 * 180.02562 * 19 17 15 21 21 C 1.76197 * 99.99958 * 180.02562 * 20 19 17 22 22 H 1.08008 * 119.99914 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00243 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99782 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00188 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47104 * 89.99919 * 25 23 21 27 27 H 1.48498 * 109.46993 * 210.00231 * 25 23 21 28 28 H 1.48504 * 109.47061 * 330.00171 * 25 23 21 29 29 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 30 30 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 31 31 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47154 * 295.00093 * 4 2 1 33 33 H 1.09000 * 109.47200 * 55.00483 * 4 2 1 34 34 H 1.00907 * 110.99958 * 56.04427 * 5 4 2 35 35 H 1.08998 * 109.47171 * 299.99783 * 6 5 4 36 36 H 1.09000 * 109.47109 * 60.00181 * 6 5 4 37 37 H 1.09003 * 109.46894 * 300.00294 * 7 6 5 38 38 H 1.09000 * 109.47146 * 59.99982 * 7 6 5 39 39 H 1.09000 * 109.52015 * 302.31011 * 10 8 7 40 40 H 1.08993 * 109.52738 * 62.43446 * 10 8 7 41 41 H 1.08996 * 109.54397 * 176.84942 * 11 10 8 42 42 H 1.09002 * 109.53990 * 297.10617 * 11 10 8 43 43 H 1.08996 * 109.52086 * 62.92780 * 12 11 10 44 44 H 1.09005 * 109.52088 * 183.11498 * 12 11 10 45 45 H 1.09004 * 109.47836 * 177.59189 * 13 12 11 46 46 H 1.08997 * 109.48454 * 297.62454 * 13 12 11 47 47 H 1.09002 * 109.47391 * 89.99876 * 16 15 2 48 48 H 1.09001 * 109.46813 * 329.99933 * 16 15 2 49 49 H 1.09004 * 109.47041 * 210.00060 * 16 15 2 50 50 H 1.08996 * 109.47057 * 299.99739 * 19 17 15 51 51 H 1.08996 * 109.47084 * 60.00703 * 19 17 15 52 52 H 0.96994 * 120.00208 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5041 -0.8266 1.1904 6 6 4.0303 -1.5158 2.3761 7 6 5.5547 -1.6056 2.2792 8 6 6.1027 -2.3239 3.5139 9 1 5.7533 -1.8180 4.4139 10 6 7.6331 -2.3041 3.4787 11 6 8.1738 -3.0768 4.6858 12 6 7.6101 -4.5009 4.6608 13 6 6.0807 -4.4357 4.6504 14 8 5.6452 -3.6777 3.5199 15 7 2.0184 -0.6906 -1.1962 16 6 1.6645 -2.0932 -1.4281 17 6 2.7932 -0.0355 -2.0833 18 8 3.0858 1.1257 -1.8917 19 6 3.2960 -0.7461 -3.3135 20 16 4.3021 0.3915 -4.2985 21 6 4.7446 -0.6693 -5.6339 22 1 4.3934 -1.6906 -5.6516 23 6 5.5437 -0.1924 -6.6638 24 7 5.9712 1.0524 -6.6425 25 14 6.0122 -1.3168 -8.0799 26 1 4.9932 -1.2101 -9.1547 27 1 7.3384 -0.9145 -8.6134 28 1 6.0776 -2.7197 -7.5973 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 3.9281 0.0827 1.0823 35 1 3.7558 -0.9587 3.2719 36 1 3.6095 -2.5199 2.4294 37 1 5.8296 -2.1624 1.3834 38 1 5.9751 -0.6013 2.2262 39 1 7.9824 -2.7740 2.5593 40 1 7.9851 -1.2733 3.5174 41 1 9.2620 -3.1145 4.6369 42 1 7.8660 -2.5788 5.6052 43 1 7.9590 -5.0150 3.7653 44 1 7.9457 -5.0410 5.5462 45 1 5.6742 -5.4453 4.5895 46 1 5.7309 -3.9576 5.5654 47 1 0.7376 -2.1444 -1.9994 48 1 1.5296 -2.5968 -0.4709 49 1 2.4630 -2.5818 -1.9864 50 1 3.9018 -1.6022 -3.0165 51 1 2.4485 -1.0890 -3.9070 52 1 6.5293 1.3859 -7.3623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568259997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:49 Heat of formation + Delta-G solvation = -121.012081 kcal Electronic energy + Delta-G solvation = -28255.518166 eV Core-core repulsion = 24379.605249 eV Total energy + Delta-G solvation = -3875.912917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.91764 -40.41046 -38.11649 -36.40932 -34.57009 -34.55407 -34.07073 -32.67494 -30.17683 -29.62191 -27.71800 -27.62677 -26.52607 -25.17140 -23.75710 -22.67464 -22.12083 -21.14490 -20.23338 -19.52412 -18.23337 -17.51969 -17.15953 -17.00817 -16.86676 -16.72200 -16.28318 -15.82362 -15.76407 -15.54776 -15.27293 -15.11476 -14.58256 -14.50204 -14.39202 -14.30019 -13.88498 -13.66123 -13.53320 -13.34616 -13.23107 -13.14681 -13.04857 -12.99316 -12.88264 -12.72715 -12.57164 -12.34826 -12.12885 -12.03138 -11.87096 -11.78927 -11.66749 -11.54335 -11.15760 -11.12800 -10.74378 -10.34415 -10.23847 -9.52677 -9.30047 -8.63872 -8.33035 -6.10381 1.28760 1.42765 1.47852 1.58828 1.72612 2.21930 2.30595 2.84148 3.00641 3.11611 3.32370 3.74423 3.80362 3.88439 3.93880 3.98579 4.02461 4.13742 4.18418 4.25260 4.31632 4.34859 4.35967 4.38100 4.47397 4.51547 4.55003 4.61408 4.67196 4.73761 4.76095 4.77518 4.82085 4.83845 4.91463 4.99205 5.04808 5.09673 5.11361 5.13678 5.17723 5.26339 5.29051 5.39185 5.42815 5.72394 6.14253 6.21287 6.34404 6.37029 6.43021 7.07975 7.29753 8.76292 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008675 B = 0.002534 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.936754 B =11045.091903 C =13313.323245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 H 0.071 0.929 4 C 0.059 3.941 5 N -0.701 5.701 6 C 0.076 3.924 7 C -0.109 4.109 8 C 0.098 3.902 9 H 0.066 0.934 10 C -0.153 4.153 11 C -0.122 4.122 12 C -0.156 4.156 13 C 0.055 3.945 14 O -0.398 6.398 15 N -0.587 5.587 16 C 0.080 3.920 17 C 0.538 3.462 18 O -0.570 6.570 19 C -0.121 4.121 20 S -0.150 6.150 21 C -0.545 4.545 22 H 0.079 0.921 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.259 1.259 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.335 0.665 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.092 0.908 49 H 0.065 0.935 50 H 0.099 0.901 51 H 0.100 0.900 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -12.300 26.965 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.030 3.970 3 H 0.089 0.911 4 C -0.070 4.070 5 N -0.332 5.332 6 C -0.053 4.053 7 C -0.147 4.147 8 C 0.040 3.960 9 H 0.084 0.916 10 C -0.191 4.191 11 C -0.159 4.159 12 C -0.194 4.194 13 C -0.021 4.021 14 O -0.318 6.318 15 N -0.320 5.320 16 C -0.062 4.062 17 C 0.325 3.675 18 O -0.450 6.450 19 C -0.272 4.272 20 S 0.078 5.922 21 C -0.693 4.693 22 H 0.098 0.902 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.183 1.183 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.110 0.890 49 H 0.084 0.916 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.283 -11.138 26.667 29.378 hybrid contribution 0.374 -0.750 -0.504 0.978 sum -4.909 -11.887 26.162 29.153 Atomic orbital electron populations 1.22030 0.92435 1.03598 1.02794 1.21211 0.95316 0.96674 0.83847 0.91112 1.22284 0.87849 1.01315 0.95591 1.60350 1.05736 1.25884 1.41206 1.21784 0.94325 0.98946 0.90223 1.21548 0.95620 1.00148 0.97346 1.22041 0.93253 0.82802 0.97906 0.91567 1.22218 0.95751 1.01763 0.99382 1.21600 1.00984 0.95448 0.97877 1.22192 0.96451 0.97563 1.03164 1.22722 0.94119 0.96669 0.88620 1.87939 1.74258 1.23404 1.46226 1.47576 1.49684 1.13115 1.21601 1.21877 1.01016 0.80073 1.03264 1.19917 0.77667 0.86113 0.83767 1.90637 1.58729 1.18612 1.77010 1.23338 1.03308 1.02907 0.97621 1.85490 1.63495 1.19529 1.23718 1.23187 1.37433 0.99980 1.08678 0.90236 1.26124 0.94783 0.97215 1.01026 1.70185 1.34147 1.16613 1.33845 0.84962 0.77756 0.78231 0.77085 1.19217 1.20199 1.18291 0.89592 0.93435 0.90375 0.92776 0.89381 0.84727 0.94701 0.90953 0.92474 0.90474 0.92438 0.90255 0.90943 0.90902 0.92185 0.89208 0.88131 0.92279 0.91438 0.88981 0.91620 0.88238 0.88129 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.20 71.98 0.66 -1.90 16 2 C 0.13 3.10 2.88 44.99 0.13 3.23 16 3 H 0.07 2.09 6.90 -2.39 -0.02 2.07 16 4 C 0.06 1.10 4.93 86.30 0.43 1.52 16 5 N -0.70 -16.05 6.22 -513.91 -3.20 -19.24 16 6 C 0.08 1.47 5.58 86.31 0.48 1.95 16 7 C -0.11 -2.21 5.18 30.59 0.16 -2.05 16 8 C 0.10 1.70 2.64 30.62 0.08 1.78 16 9 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 10 C -0.15 -2.49 5.42 30.69 0.17 -2.32 16 11 C -0.12 -1.53 6.03 30.71 0.19 -1.34 16 12 C -0.16 -1.90 6.14 30.68 0.19 -1.71 16 13 C 0.05 0.74 6.84 72.01 0.49 1.23 16 14 O -0.40 -7.83 9.94 -148.98 -1.48 -9.32 16 15 N -0.59 -16.56 2.49 -822.57 -2.04 -18.60 16 16 C 0.08 1.68 9.30 127.77 1.19 2.87 16 17 C 0.54 21.34 7.69 87.66 0.67 22.02 16 18 O -0.57 -27.40 15.19 -3.02 -0.05 -27.45 16 19 C -0.12 -5.17 4.71 71.24 0.34 -4.84 16 20 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 21 C -0.54 -32.10 9.50 67.95 0.65 -31.46 16 22 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -57.08 13.22 21.65 0.29 -56.80 16 25 Si 1.00 44.62 29.55 68.60 2.03 46.65 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.04 7.67 -2.39 -0.02 1.03 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.40 6.88 -2.39 -0.02 1.38 16 34 H 0.34 8.71 8.73 -89.69 -0.78 7.92 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 1.48 7.83 -2.39 -0.02 1.46 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.09 1.49 6.53 -2.39 -0.02 1.48 16 49 H 0.07 1.51 6.44 -2.38 -0.02 1.49 16 50 H 0.10 4.03 7.40 -2.40 -0.02 4.01 16 51 H 0.10 3.96 8.11 -2.40 -0.02 3.94 16 52 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -77.54 422.91 0.76 -76.79 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.10 Total: 27.55 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 6.28 Total: -9.79 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -4.96 Total: -94.64 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.53 Total: -36.76 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -77.54 0.76 -76.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568259997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.227 kcal (2) G-P(sol) polarization free energy of solvation -77.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds