Wall clock time and date at job start Sat Apr 11 2020 07:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47586 * 2 1 4 4 C 1.53004 * 109.47237 * 120.00413 * 2 1 3 5 5 N 1.46895 * 109.47035 * 174.99958 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47053 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46891 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.48271 * 55.02482 * 8 7 6 10 10 C 1.53097 * 109.47918 * 175.05917 * 8 7 6 11 11 C 1.53180 * 109.16186 * 177.59209 * 10 8 7 12 12 C 1.53180 * 109.03807 * 303.02097 * 11 10 8 13 13 C 1.53088 * 109.16266 * 56.98133 * 12 11 10 14 14 O 1.42898 * 109.48516 * 295.00292 * 8 7 6 15 15 N 1.46505 * 109.47290 * 240.00382 * 2 1 3 16 16 C 1.46499 * 119.99635 * 300.00119 * 15 2 1 17 17 C 1.34777 * 120.00341 * 119.99876 * 15 2 1 18 18 O 1.21284 * 119.99922 * 0.02562 * 17 15 2 19 19 C 1.50693 * 120.00131 * 180.02562 * 17 15 2 20 20 S 1.81000 * 109.46997 * 180.02562 * 19 17 15 21 21 C 1.76204 * 99.99843 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00273 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99984 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99888 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00086 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46816 * 59.99954 * 25 23 21 27 27 H 1.48505 * 109.47091 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47314 * 299.99992 * 25 23 21 29 29 H 1.08997 * 109.47213 * 299.99995 * 1 2 3 30 30 H 1.09007 * 109.47274 * 59.99597 * 1 2 3 31 31 H 1.09003 * 109.47519 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46863 * 54.99800 * 4 2 1 33 33 H 1.09002 * 109.46661 * 294.99977 * 4 2 1 34 34 H 1.00899 * 111.00672 * 56.04786 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 1.09001 * 109.47142 * 300.00160 * 7 6 5 38 38 H 1.09004 * 109.47006 * 60.00213 * 7 6 5 39 39 H 1.09000 * 109.52271 * 297.49526 * 10 8 7 40 40 H 1.09000 * 109.52382 * 57.68792 * 10 8 7 41 41 H 1.08998 * 109.54338 * 183.15145 * 11 10 8 42 42 H 1.09006 * 109.61690 * 62.93201 * 11 10 8 43 43 H 1.09003 * 109.51804 * 297.07371 * 12 11 10 44 44 H 1.09001 * 109.57254 * 176.91863 * 12 11 10 45 45 H 1.08995 * 109.47762 * 182.41224 * 13 12 11 46 46 H 1.08999 * 109.49335 * 62.38162 * 13 12 11 47 47 H 1.09004 * 109.47391 * 89.99970 * 16 15 2 48 48 H 1.08997 * 109.47090 * 209.99357 * 16 15 2 49 49 H 1.09001 * 109.47529 * 329.99897 * 16 15 2 50 50 H 1.09000 * 109.47341 * 299.99998 * 19 17 15 51 51 H 1.08999 * 109.47158 * 60.00258 * 19 17 15 52 52 H 0.97001 * 119.99973 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5039 -0.8267 1.1903 6 6 4.0303 -1.5150 2.3766 7 6 5.5545 -1.6060 2.2791 8 6 6.1027 -2.3222 3.5149 9 1 5.6157 -3.2918 3.6191 10 6 7.6126 -2.5230 3.3608 11 6 8.1635 -3.1861 4.6270 12 6 7.8133 -2.3171 5.8389 13 6 6.2957 -2.1243 5.8973 14 8 5.8448 -1.5321 4.6774 15 7 2.0183 -0.6905 -1.1962 16 6 1.6643 -2.0931 -1.4281 17 6 2.7931 -0.0355 -2.0834 18 8 3.0865 1.1255 -1.8912 19 6 3.2950 -0.7457 -3.3141 20 16 4.3013 0.3918 -4.2988 21 6 4.7426 -0.6687 -5.6351 22 1 4.3915 -1.6898 -5.6528 23 6 5.5424 -0.1919 -6.6645 24 7 5.9708 1.0526 -6.6427 25 14 6.0109 -1.3162 -8.0807 26 1 4.7809 -1.7839 -8.7691 27 1 6.8633 -0.5721 -9.0424 28 1 6.7602 -2.4864 -7.5568 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -1.7198 1.2950 33 1 1.7516 -0.1584 2.1369 34 1 3.9280 0.0824 1.0824 35 1 3.7559 -0.9573 3.2719 36 1 3.6095 -2.5191 2.4308 37 1 5.8286 -2.1640 1.3838 38 1 5.9757 -0.6020 2.2248 39 1 7.8091 -3.1622 2.5000 40 1 8.0957 -1.5567 3.2160 41 1 9.2464 -3.2811 4.5472 42 1 7.7185 -4.1740 4.7460 43 1 8.3005 -1.3466 5.7441 44 1 8.1535 -2.8079 6.7507 45 1 6.0442 -1.4714 6.7330 46 1 5.8112 -3.0912 6.0328 47 1 0.7375 -2.1443 -1.9995 48 1 2.4627 -2.5818 -1.9865 49 1 1.5294 -2.5969 -0.4710 50 1 3.9004 -1.6023 -3.0179 51 1 2.4470 -1.0878 -3.9074 52 1 6.5294 1.3860 -7.3622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568259999.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:55 Heat of formation + Delta-G solvation = -98.818994 kcal Electronic energy + Delta-G solvation = -28190.889331 eV Core-core repulsion = 24315.938778 eV Total energy + Delta-G solvation = -3874.950552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.79882 -39.53281 -37.00200 -35.32983 -33.93359 -33.14733 -32.36862 -31.70325 -29.01528 -28.51614 -26.63668 -25.78877 -25.41597 -24.48411 -23.03792 -21.66912 -21.14306 -20.53243 -18.89306 -17.62393 -16.91782 -16.69559 -16.39400 -15.92471 -15.43862 -15.24220 -14.99034 -14.85119 -14.75045 -14.48581 -14.29121 -14.03816 -13.72742 -13.28015 -13.10730 -13.01702 -12.84150 -12.71373 -12.52778 -12.40814 -12.24451 -12.06225 -11.89192 -11.76583 -11.57979 -11.52243 -11.31171 -11.08681 -10.99895 -10.98503 -10.95635 -10.80857 -10.70753 -10.51274 -9.74341 -9.70880 -9.17631 -9.00206 -8.44202 -8.28714 -8.13781 -6.41755 -6.15676 -3.84965 3.07140 3.25233 3.27199 3.30417 3.33536 3.48454 3.71989 3.97331 4.26622 4.44732 4.48143 4.52839 4.60230 4.73334 4.84242 5.02121 5.03544 5.05441 5.13255 5.17742 5.19098 5.20535 5.25188 5.29405 5.33674 5.39940 5.43096 5.47264 5.54305 5.56755 5.57664 5.63374 5.65462 5.68657 5.69596 5.74951 5.87330 5.88533 6.00407 6.01188 6.06444 6.09715 6.14277 6.26650 6.82283 6.96500 7.00044 7.34232 7.64885 7.75717 8.40982 8.76078 9.29409 10.91680 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009336 B = 0.002422 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.394565 B =11555.855915 C =13810.135323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.099 0.901 4 C 0.052 3.948 5 N -0.684 5.684 6 C 0.066 3.934 7 C -0.111 4.111 8 C 0.094 3.906 9 H 0.057 0.943 10 C -0.152 4.152 11 C -0.123 4.123 12 C -0.157 4.157 13 C 0.061 3.939 14 O -0.378 6.378 15 N -0.602 5.602 16 C 0.088 3.912 17 C 0.540 3.460 18 O -0.524 6.524 19 C -0.147 4.147 20 S -0.063 6.063 21 C -0.533 4.533 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.917 3.083 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.346 0.654 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.085 0.915 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 -10.344 25.210 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.117 0.883 4 C -0.079 4.079 5 N -0.315 5.315 6 C -0.064 4.064 7 C -0.149 4.149 8 C 0.036 3.964 9 H 0.075 0.925 10 C -0.189 4.189 11 C -0.160 4.160 12 C -0.195 4.195 13 C -0.016 4.016 14 O -0.298 6.298 15 N -0.337 5.337 16 C -0.056 4.056 17 C 0.328 3.672 18 O -0.400 6.400 19 C -0.298 4.298 20 S 0.164 5.836 21 C -0.681 4.681 22 H 0.089 0.911 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.165 0.835 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.107 0.893 51 H 0.103 0.897 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.039 -8.876 25.001 26.836 hybrid contribution 0.037 -1.851 -0.366 1.887 sum -4.002 -10.727 24.635 27.166 Atomic orbital electron populations 1.22083 0.94925 1.02194 1.02482 1.20996 0.93501 0.98113 0.84124 0.88262 1.22303 0.88768 1.00504 0.96280 1.60355 1.04747 1.26526 1.39879 1.21853 0.94472 0.98913 0.91116 1.21601 0.95262 1.02067 0.95928 1.22100 0.94296 0.94164 0.85882 0.92538 1.22214 0.96286 1.02130 0.98305 1.21588 1.01242 0.98669 0.94537 1.22197 0.97396 1.01140 0.98773 1.22526 0.93359 0.98355 0.87314 1.87956 1.80907 1.46528 1.14367 1.47580 1.51820 1.12080 1.22240 1.21609 1.00475 0.82100 1.01393 1.20189 0.76881 0.86639 0.83454 1.90661 1.56476 1.16818 1.76005 1.23522 1.04049 1.04572 0.97618 1.85355 1.61178 1.15488 1.21567 1.22829 1.37138 0.99741 1.08438 0.91095 1.24982 0.95186 0.95514 0.97924 1.70016 1.33223 1.14374 1.32767 0.86251 0.78518 0.80066 0.80808 1.19987 1.20867 1.19975 0.91782 0.91821 0.92383 0.90993 0.94582 0.83518 0.94780 0.91668 0.89405 0.90980 0.90582 0.90809 0.91440 0.91939 0.91012 0.91080 0.89092 0.93447 0.93426 0.90931 0.91652 0.89302 0.89661 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.19 37.15 0.34 -1.21 16 2 C 0.14 1.68 2.88 -67.93 -0.20 1.49 16 3 H 0.10 1.46 6.90 -51.93 -0.36 1.10 16 4 C 0.05 0.54 4.93 -3.82 -0.02 0.52 16 5 N -0.68 -8.07 6.23 -113.78 -0.71 -8.78 16 6 C 0.07 0.67 5.58 -3.82 -0.02 0.65 16 7 C -0.11 -1.12 5.18 -26.73 -0.14 -1.26 16 8 C 0.09 0.84 2.64 -26.68 -0.07 0.77 16 9 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 10 C -0.15 -1.25 5.42 -26.59 -0.14 -1.40 16 11 C -0.12 -0.85 6.03 -26.55 -0.16 -1.01 16 12 C -0.16 -1.04 6.14 -26.59 -0.16 -1.21 16 13 C 0.06 0.45 6.84 37.20 0.25 0.71 16 14 O -0.38 -3.80 9.94 -35.23 -0.35 -4.15 16 15 N -0.60 -8.69 2.49 -173.93 -0.43 -9.12 16 16 C 0.09 1.00 9.30 59.85 0.56 1.56 16 17 C 0.54 10.49 7.69 -10.99 -0.08 10.41 16 18 O -0.52 -12.07 15.19 5.55 0.08 -11.98 16 19 C -0.15 -3.09 4.71 36.00 0.17 -2.92 16 20 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 21 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 25 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 31 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 32 H 0.07 0.68 6.88 -51.93 -0.36 0.32 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.35 4.57 8.73 -39.29 -0.34 4.23 16 35 H 0.03 0.36 7.82 -51.93 -0.41 -0.04 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 49 H 0.06 0.62 6.53 -51.93 -0.34 0.28 16 50 H 0.09 1.77 7.40 -51.92 -0.38 1.38 16 51 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 52 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 422.91 15.07 6.37 6.37 Total: -1.00 -34.09 422.91 -10.66 -44.76 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -9.65 Total: 1.98 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 0.52 Total: -5.99 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.41 Total: -43.66 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.27 Total: -16.13 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.09 -10.66 -44.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568259999.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.063 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds