Wall clock time and date at job start Sat Apr 11 2020 07:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47586 * 2 1 4 4 C 1.53004 * 109.47237 * 120.00413 * 2 1 3 5 5 N 1.46895 * 109.47035 * 174.99958 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47053 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46891 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.48271 * 55.02482 * 8 7 6 10 10 C 1.53097 * 109.47918 * 175.05917 * 8 7 6 11 11 C 1.53180 * 109.16186 * 177.59209 * 10 8 7 12 12 C 1.53180 * 109.03807 * 303.02097 * 11 10 8 13 13 C 1.53088 * 109.16266 * 56.98133 * 12 11 10 14 14 O 1.42898 * 109.48516 * 295.00292 * 8 7 6 15 15 N 1.46505 * 109.47290 * 240.00382 * 2 1 3 16 16 C 1.46499 * 119.99635 * 300.00119 * 15 2 1 17 17 C 1.34777 * 120.00341 * 119.99876 * 15 2 1 18 18 O 1.21284 * 119.99922 * 0.02562 * 17 15 2 19 19 C 1.50693 * 120.00131 * 180.02562 * 17 15 2 20 20 S 1.81000 * 109.46997 * 180.02562 * 19 17 15 21 21 C 1.76204 * 99.99843 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00273 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99984 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99888 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00086 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46816 * 59.99954 * 25 23 21 27 27 H 1.48505 * 109.47091 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47314 * 299.99992 * 25 23 21 29 29 H 1.08997 * 109.47213 * 299.99995 * 1 2 3 30 30 H 1.09007 * 109.47274 * 59.99597 * 1 2 3 31 31 H 1.09003 * 109.47519 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46863 * 54.99800 * 4 2 1 33 33 H 1.09002 * 109.46661 * 294.99977 * 4 2 1 34 34 H 1.00899 * 111.00672 * 56.04786 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 1.09001 * 109.47142 * 300.00160 * 7 6 5 38 38 H 1.09004 * 109.47006 * 60.00213 * 7 6 5 39 39 H 1.09000 * 109.52271 * 297.49526 * 10 8 7 40 40 H 1.09000 * 109.52382 * 57.68792 * 10 8 7 41 41 H 1.08998 * 109.54338 * 183.15145 * 11 10 8 42 42 H 1.09006 * 109.61690 * 62.93201 * 11 10 8 43 43 H 1.09003 * 109.51804 * 297.07371 * 12 11 10 44 44 H 1.09001 * 109.57254 * 176.91863 * 12 11 10 45 45 H 1.08995 * 109.47762 * 182.41224 * 13 12 11 46 46 H 1.08999 * 109.49335 * 62.38162 * 13 12 11 47 47 H 1.09004 * 109.47391 * 89.99970 * 16 15 2 48 48 H 1.08997 * 109.47090 * 209.99357 * 16 15 2 49 49 H 1.09001 * 109.47529 * 329.99897 * 16 15 2 50 50 H 1.09000 * 109.47341 * 299.99998 * 19 17 15 51 51 H 1.08999 * 109.47158 * 60.00258 * 19 17 15 52 52 H 0.97001 * 119.99973 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5039 -0.8267 1.1903 6 6 4.0303 -1.5150 2.3766 7 6 5.5545 -1.6060 2.2791 8 6 6.1027 -2.3222 3.5149 9 1 5.6157 -3.2918 3.6191 10 6 7.6126 -2.5230 3.3608 11 6 8.1635 -3.1861 4.6270 12 6 7.8133 -2.3171 5.8389 13 6 6.2957 -2.1243 5.8973 14 8 5.8448 -1.5321 4.6774 15 7 2.0183 -0.6905 -1.1962 16 6 1.6643 -2.0931 -1.4281 17 6 2.7931 -0.0355 -2.0834 18 8 3.0865 1.1255 -1.8912 19 6 3.2950 -0.7457 -3.3141 20 16 4.3013 0.3918 -4.2988 21 6 4.7426 -0.6687 -5.6351 22 1 4.3915 -1.6898 -5.6528 23 6 5.5424 -0.1919 -6.6645 24 7 5.9708 1.0526 -6.6427 25 14 6.0109 -1.3162 -8.0807 26 1 4.7809 -1.7839 -8.7691 27 1 6.8633 -0.5721 -9.0424 28 1 6.7602 -2.4864 -7.5568 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -1.7198 1.2950 33 1 1.7516 -0.1584 2.1369 34 1 3.9280 0.0824 1.0824 35 1 3.7559 -0.9573 3.2719 36 1 3.6095 -2.5191 2.4308 37 1 5.8286 -2.1640 1.3838 38 1 5.9757 -0.6020 2.2248 39 1 7.8091 -3.1622 2.5000 40 1 8.0957 -1.5567 3.2160 41 1 9.2464 -3.2811 4.5472 42 1 7.7185 -4.1740 4.7460 43 1 8.3005 -1.3466 5.7441 44 1 8.1535 -2.8079 6.7507 45 1 6.0442 -1.4714 6.7330 46 1 5.8112 -3.0912 6.0328 47 1 0.7375 -2.1443 -1.9995 48 1 2.4627 -2.5818 -1.9865 49 1 1.5294 -2.5969 -0.4710 50 1 3.9004 -1.6023 -3.0179 51 1 2.4470 -1.0878 -3.9074 52 1 6.5294 1.3860 -7.3622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568259999.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:54 Heat of formation + Delta-G solvation = -121.201692 kcal Electronic energy + Delta-G solvation = -28191.859917 eV Core-core repulsion = 24315.938778 eV Total energy + Delta-G solvation = -3875.921139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.91340 -40.41878 -38.11194 -36.40291 -34.56342 -34.56021 -34.07048 -32.67436 -30.17171 -29.62398 -27.70686 -27.61825 -26.53097 -25.16159 -23.76641 -22.67481 -22.12333 -21.13662 -20.22932 -19.51836 -18.22603 -17.54512 -17.12313 -16.98978 -16.85904 -16.71687 -16.27961 -15.86871 -15.75310 -15.57389 -15.23096 -15.16566 -14.62901 -14.46852 -14.41163 -14.27090 -13.84130 -13.64097 -13.53380 -13.32571 -13.21285 -13.14679 -13.13583 -12.94049 -12.85382 -12.68853 -12.58551 -12.33308 -12.21987 -12.03090 -11.86809 -11.76572 -11.67139 -11.54711 -11.17208 -11.10936 -10.73921 -10.36025 -10.22966 -9.52083 -9.31235 -8.63472 -8.32223 -6.09818 1.29054 1.44646 1.48103 1.58281 1.73365 2.22312 2.31254 2.83396 3.01315 3.11600 3.33101 3.74947 3.77537 3.88533 3.93863 3.98562 4.02796 4.15667 4.18404 4.26522 4.32905 4.35427 4.37108 4.39746 4.43772 4.52221 4.55876 4.63034 4.67578 4.75179 4.77040 4.78938 4.82910 4.83674 4.91020 4.99946 5.00595 5.08840 5.11730 5.13184 5.16821 5.27223 5.29046 5.38106 5.43072 5.72818 6.13798 6.21620 6.29490 6.35570 6.43962 7.08517 7.30675 8.76787 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009336 B = 0.002422 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.394565 B =11555.855915 C =13810.135323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 H 0.068 0.932 4 C 0.059 3.941 5 N -0.698 5.698 6 C 0.075 3.925 7 C -0.108 4.108 8 C 0.098 3.902 9 H 0.068 0.932 10 C -0.153 4.153 11 C -0.122 4.122 12 C -0.155 4.155 13 C 0.055 3.945 14 O -0.401 6.401 15 N -0.587 5.587 16 C 0.079 3.921 17 C 0.537 3.463 18 O -0.572 6.572 19 C -0.120 4.120 20 S -0.152 6.152 21 C -0.545 4.545 22 H 0.081 0.919 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.333 0.667 35 H 0.030 0.970 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.102 0.898 51 H 0.101 0.899 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 -13.634 26.313 30.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.071 4.071 5 N -0.329 5.329 6 C -0.054 4.054 7 C -0.146 4.146 8 C 0.040 3.960 9 H 0.086 0.914 10 C -0.191 4.191 11 C -0.159 4.159 12 C -0.193 4.193 13 C -0.021 4.021 14 O -0.321 6.321 15 N -0.320 5.320 16 C -0.063 4.063 17 C 0.324 3.676 18 O -0.451 6.451 19 C -0.271 4.271 20 S 0.075 5.925 21 C -0.693 4.693 22 H 0.099 0.901 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.186 1.186 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.112 0.888 50 H 0.120 0.880 51 H 0.119 0.881 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.372 -12.217 26.149 29.358 hybrid contribution 0.360 -0.845 -0.573 1.083 sum -5.012 -13.062 25.576 29.152 Atomic orbital electron populations 1.22025 0.92414 1.03674 1.02723 1.21191 0.95316 0.96612 0.83925 0.91407 1.22291 0.87900 1.01450 0.95439 1.60434 1.05696 1.25860 1.40863 1.21797 0.94213 0.99133 0.90252 1.21550 0.95519 1.01008 0.96498 1.22051 0.94627 0.94157 0.85204 0.91402 1.22215 0.95921 1.01563 0.99383 1.21602 1.01568 0.98988 0.93784 1.22189 0.96918 1.00721 0.99486 1.22720 0.93829 0.99081 0.86496 1.87922 1.81318 1.47483 1.15327 1.47575 1.49668 1.13202 1.21516 1.21897 1.01063 0.79958 1.03364 1.19950 0.77685 0.86112 0.83814 1.90646 1.58721 1.18748 1.77023 1.23331 1.03322 1.02906 0.97513 1.85541 1.63511 1.19676 1.23740 1.23157 1.37440 1.00014 1.08658 0.90110 1.26136 0.94813 0.97203 1.01059 1.70188 1.34047 1.16651 1.33941 0.85015 0.78602 0.77798 0.76642 1.18626 1.20370 1.18629 0.89753 0.93462 0.90180 0.88925 0.93198 0.84986 0.95149 0.90381 0.90092 0.92920 0.90320 0.92385 0.90952 0.90905 0.92155 0.89202 0.88182 0.92254 0.91538 0.91418 0.88781 0.87993 0.88097 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.19 71.98 0.66 -1.90 16 2 C 0.13 3.11 2.88 44.99 0.13 3.24 16 3 H 0.07 2.05 6.90 -2.39 -0.02 2.03 16 4 C 0.06 1.09 4.93 86.31 0.43 1.52 16 5 N -0.70 -15.99 6.23 -513.88 -3.20 -19.19 16 6 C 0.07 1.44 5.58 86.30 0.48 1.92 16 7 C -0.11 -2.19 5.18 30.59 0.16 -2.03 16 8 C 0.10 1.69 2.64 30.63 0.08 1.77 16 9 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 10 C -0.15 -2.49 5.42 30.69 0.17 -2.32 16 11 C -0.12 -1.53 6.03 30.71 0.19 -1.35 16 12 C -0.16 -1.86 6.14 30.68 0.19 -1.67 16 13 C 0.06 0.73 6.84 72.01 0.49 1.22 16 14 O -0.40 -7.77 9.94 -148.98 -1.48 -9.26 16 15 N -0.59 -16.22 2.49 -822.59 -2.04 -18.27 16 16 C 0.08 1.56 9.30 127.77 1.19 2.75 16 17 C 0.54 21.12 7.69 87.65 0.67 21.79 16 18 O -0.57 -27.59 15.19 -3.04 -0.05 -27.63 16 19 C -0.12 -5.04 4.71 71.23 0.34 -4.71 16 20 S -0.15 -8.71 20.57 -56.49 -1.16 -9.88 16 21 C -0.54 -31.82 9.50 67.96 0.65 -31.18 16 22 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.72 5.49 84.86 0.47 1.19 16 24 N -0.91 -57.00 13.22 21.65 0.29 -56.72 16 25 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 26 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 1.04 7.67 -2.39 -0.02 1.02 16 32 H 0.09 1.37 6.88 -2.39 -0.02 1.35 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.33 9.11 8.73 -89.69 -0.78 8.33 16 35 H 0.03 0.61 7.82 -2.39 -0.02 0.60 16 36 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 44 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 1.44 6.44 -2.39 -0.02 1.42 16 49 H 0.09 1.36 6.53 -2.39 -0.02 1.34 16 50 H 0.10 4.00 7.40 -2.40 -0.02 3.98 16 51 H 0.10 3.90 8.11 -2.40 -0.02 3.88 16 52 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -77.44 422.91 0.76 -76.68 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.10 Total: 27.73 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 6.28 Total: -9.74 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -4.96 Total: -94.17 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -1.53 Total: -36.89 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.88 kcal Total: -77.44 0.76 -76.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568259999.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.521 kcal (2) G-P(sol) polarization free energy of solvation -77.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds