Wall clock time and date at job start Sat Apr 11 2020 07:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47286 * 2 1 4 4 N 1.46503 * 109.47227 * 120.00016 * 2 1 3 5 5 C 1.36931 * 120.00153 * 274.99652 * 4 2 1 6 6 H 1.08005 * 120.00037 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99936 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99916 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99989 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47169 * 90.00215 * 9 7 5 11 11 H 1.48505 * 109.47286 * 210.00409 * 9 7 5 12 12 H 1.48503 * 109.46968 * 329.99978 * 9 7 5 13 13 C 1.53002 * 109.47060 * 240.00485 * 2 1 3 14 14 H 1.09006 * 109.49661 * 185.06948 * 13 2 1 15 15 C 1.53030 * 109.49985 * 64.99686 * 13 2 1 16 16 C 1.53041 * 109.53782 * 178.68425 * 15 13 2 17 17 C 1.53194 * 109.31558 * 61.36874 * 16 15 13 18 18 N 1.46927 * 108.76930 * 305.36542 * 17 16 15 19 19 C 1.34781 * 120.62821 * 233.33152 * 18 17 16 20 20 O 1.21554 * 119.99812 * 174.20984 * 19 18 17 21 21 C 1.47839 * 119.99781 * 354.20603 * 19 18 17 22 22 C 1.39603 * 120.13681 * 323.99030 * 21 19 18 23 23 C 1.38000 * 119.89750 * 179.97438 * 22 21 19 24 24 C 1.38145 * 120.10519 * 0.02562 * 23 22 21 25 25 C 1.38752 * 120.27417 * 359.97438 * 24 23 22 26 26 C 1.37708 * 120.18627 * 359.71902 * 25 24 23 27 27 C 1.51109 * 107.25622 * 179.97438 * 25 24 23 28 28 O 1.43931 * 105.95492 * 17.73075 * 27 25 24 29 29 C 1.43928 * 104.96718 * 331.47588 * 28 27 25 30 30 C 1.46925 * 118.74016 * 53.60908 * 18 17 16 31 31 H 1.08996 * 109.47191 * 59.99848 * 1 2 3 32 32 H 1.09002 * 109.47286 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46856 * 299.99958 * 1 2 3 34 34 H 0.97007 * 119.99270 * 95.00000 * 4 2 1 35 35 H 0.97003 * 119.99830 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.46095 * 58.66736 * 15 13 2 37 37 H 1.08996 * 109.46343 * 298.70606 * 15 13 2 38 38 H 1.09000 * 109.50185 * 301.41453 * 16 15 13 39 39 H 1.09006 * 109.49694 * 181.32115 * 16 15 13 40 40 H 1.08998 * 109.58549 * 185.58012 * 17 16 15 41 41 H 1.08996 * 109.70312 * 65.21473 * 17 16 15 42 42 H 1.07997 * 120.04960 * 359.97438 * 22 21 19 43 43 H 1.07993 * 119.94738 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.10048 * 180.30047 * 26 25 24 45 45 H 1.09000 * 110.15113 * 136.84773 * 27 25 24 46 46 H 1.08999 * 110.15736 * 258.53144 * 27 25 24 47 47 H 1.09004 * 110.15614 * 269.40294 * 29 28 27 48 48 H 1.09000 * 110.15263 * 147.64581 * 29 28 27 49 49 H 1.08996 * 109.59308 * 66.17585 * 30 18 17 50 50 H 1.09002 * 109.58340 * 186.60244 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6114 -0.6621 3.5092 8 7 2.9244 -1.9391 3.4500 9 14 2.7893 0.2696 5.1185 10 1 1.5213 0.1784 5.8860 11 1 3.8936 -0.3237 5.9145 12 1 3.0944 1.6949 4.8341 13 6 2.0400 -0.7212 -1.2493 14 1 3.1262 -0.8007 -1.2055 15 6 1.6354 0.0687 -2.4960 16 6 2.1732 -0.6345 -3.7443 17 6 1.5611 -2.0356 -3.8400 18 7 1.8219 -2.7522 -2.5842 19 6 2.4077 -3.9660 -2.5950 20 8 2.7138 -4.5025 -1.5481 21 6 2.6778 -4.6448 -3.8803 22 6 1.7801 -4.5185 -4.9419 23 6 2.0374 -5.1539 -6.1396 24 6 3.1809 -5.9145 -6.2888 25 6 4.0770 -6.0440 -5.2375 26 6 3.8350 -5.4099 -4.0393 27 6 5.2053 -6.9277 -5.7164 28 8 5.1236 -6.9297 -7.1534 29 6 3.7310 -6.7149 -7.4469 30 6 1.4263 -2.1232 -1.3166 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6318 1.1525 35 1 3.2477 -2.3964 4.2420 36 1 2.0505 1.0751 -2.4389 37 1 0.5484 0.1271 -2.5521 38 1 3.2582 -0.7153 -3.6775 39 1 1.9048 -0.0589 -4.6303 40 1 2.0148 -2.5766 -4.6704 41 1 0.4857 -1.9567 -3.9991 42 1 0.8857 -3.9244 -4.8260 43 1 1.3437 -5.0564 -6.9615 44 1 4.5359 -5.5076 -3.2235 45 1 6.1638 -6.5200 -5.3954 46 1 5.0798 -7.9394 -5.3306 47 1 3.2116 -7.6701 -7.5235 48 1 3.6251 -6.1536 -8.3752 49 1 0.3399 -2.0492 -1.2687 50 1 1.7910 -2.7222 -0.4821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568411939.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:03 Heat of formation + Delta-G solvation = -48.627262 kcal Electronic energy + Delta-G solvation = -30438.349025 eV Core-core repulsion = 26430.130998 eV Total energy + Delta-G solvation = -4008.218027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07598 -41.13290 -39.32435 -38.10908 -36.98840 -34.75021 -33.29115 -32.71139 -32.64256 -31.34431 -29.42752 -29.02000 -27.12162 -26.36726 -25.62568 -24.60666 -23.42563 -22.74666 -22.22341 -20.88010 -19.95473 -19.25042 -18.39591 -17.61373 -17.56762 -17.09658 -16.83530 -16.74411 -16.26460 -16.04567 -15.52751 -15.48815 -15.38132 -15.22593 -14.93279 -14.59626 -14.35336 -14.19156 -14.00514 -13.97585 -13.88617 -13.55835 -13.31993 -13.24171 -12.97873 -12.86382 -12.77984 -12.58925 -12.32916 -12.14889 -11.99892 -11.91492 -11.81263 -11.71565 -11.42739 -11.21538 -11.16461 -10.96168 -10.87433 -10.03827 -9.72542 -9.54307 -9.01905 -7.93391 -5.22961 -0.28469 0.18553 1.43436 1.46276 1.54514 1.58118 1.87555 2.55005 2.56458 2.90582 3.08261 3.39257 3.43979 3.55281 3.71800 3.82017 3.87168 3.92214 4.05107 4.13588 4.14789 4.25844 4.34048 4.37768 4.40303 4.41861 4.54553 4.56927 4.61892 4.70047 4.71099 4.72841 4.81272 4.86520 4.87711 4.90086 5.04604 5.09492 5.11785 5.14275 5.18268 5.23272 5.24843 5.36510 5.44242 5.48945 5.54459 5.61562 5.68862 5.74936 6.27643 6.33188 7.03445 7.32355 8.11289 8.32335 9.30182 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002466 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.172532 B =11353.299598 C =12492.446584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.047 0.953 4 N -0.742 5.742 5 C -0.235 4.235 6 H 0.079 0.921 7 C -0.084 4.084 8 N -0.974 5.974 9 Si 0.974 3.026 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.092 4.092 14 H 0.038 0.962 15 C -0.108 4.108 16 C -0.130 4.130 17 C 0.086 3.914 18 N -0.598 5.598 19 C 0.544 3.456 20 O -0.590 6.590 21 C -0.136 4.136 22 C -0.078 4.078 23 C -0.088 4.088 24 C -0.111 4.111 25 C -0.150 4.150 26 C -0.061 4.061 27 C 0.091 3.909 28 O -0.377 6.377 29 C 0.087 3.913 30 C 0.124 3.876 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.368 0.632 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.165 0.835 43 H 0.176 0.824 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.125 0.875 49 H 0.089 0.911 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -3.959 -30.813 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.065 0.935 4 N -0.382 5.382 5 C -0.367 4.367 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.625 5.625 9 Si 0.803 3.197 10 H -0.214 1.214 11 H -0.226 1.226 12 H -0.191 1.191 13 C -0.112 4.112 14 H 0.057 0.943 15 C -0.145 4.145 16 C -0.167 4.167 17 C -0.034 4.034 18 N -0.329 5.329 19 C 0.334 3.666 20 O -0.471 6.471 21 C -0.139 4.139 22 C -0.096 4.096 23 C -0.105 4.105 24 C -0.112 4.112 25 C -0.150 4.150 26 C -0.080 4.080 27 C 0.014 3.986 28 O -0.296 6.296 29 C 0.011 3.989 30 C 0.001 3.999 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.183 0.817 43 H 0.193 0.807 44 H 0.132 0.868 45 H 0.121 0.879 46 H 0.108 0.892 47 H 0.116 0.884 48 H 0.142 0.858 49 H 0.106 0.894 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.595 -4.079 -30.316 30.933 hybrid contribution 0.601 -0.222 2.376 2.461 sum -3.993 -4.300 -27.941 28.550 Atomic orbital electron populations 1.22397 0.97112 1.00922 1.01222 1.20489 0.93376 0.94820 0.84987 0.93531 1.42794 1.78514 1.10303 1.06626 1.19661 1.34487 0.94214 0.88304 0.90315 1.25629 1.03285 0.96861 1.01765 1.69879 1.52896 1.10512 1.29262 0.85126 0.76801 0.78059 0.79715 1.21371 1.22639 1.19095 1.21605 0.98675 0.94520 0.96382 0.94316 1.21605 1.02498 0.98593 0.91834 1.21943 1.00014 0.95508 0.99280 1.22631 1.02855 0.93086 0.84832 1.48154 1.58856 1.16949 1.08973 1.18962 0.76881 0.81613 0.89134 1.90828 1.53739 1.66893 1.35632 1.19727 0.98250 1.02094 0.93828 1.21743 0.98891 0.97934 0.91009 1.20739 0.96340 0.95202 0.98230 1.21663 0.95494 0.97437 0.96589 1.21068 0.99540 0.99984 0.94402 1.20343 0.96360 0.94703 0.96606 1.21830 0.97337 0.98592 0.80795 1.89074 1.25868 1.94013 1.20682 1.22063 0.80981 0.99423 0.96410 1.21600 0.99743 0.93363 0.85181 0.89773 0.93763 0.94769 0.79968 0.94315 0.90863 0.89212 0.93376 0.86713 0.87176 0.87772 0.81727 0.80692 0.86843 0.87855 0.89153 0.88382 0.85757 0.89354 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 8.76 71.98 0.63 -4.61 16 2 C 0.17 6.73 2.67 44.99 0.12 6.85 16 3 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 4 N -0.74 -39.34 5.06 -322.94 -1.63 -40.97 16 5 C -0.23 -13.54 9.93 84.03 0.83 -12.71 16 6 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 7 C -0.08 -5.07 5.50 84.86 0.47 -4.60 16 8 N -0.97 -64.04 13.06 21.65 0.28 -63.76 16 9 Si 0.97 48.29 29.55 68.60 2.03 50.32 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 C -0.09 -3.02 2.27 -10.72 -0.02 -3.05 16 14 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 15 C -0.11 -2.27 4.89 30.62 0.15 -2.12 16 16 C -0.13 -2.11 6.08 30.67 0.19 -1.93 16 17 C 0.09 1.40 4.78 86.36 0.41 1.82 16 18 N -0.60 -16.87 2.97 -822.31 -2.44 -19.31 16 19 C 0.54 18.36 7.37 86.78 0.64 19.00 16 20 O -0.59 -27.09 16.28 -3.89 -0.06 -27.16 16 21 C -0.14 -3.39 5.27 -20.07 -0.11 -3.49 16 22 C -0.08 -1.19 7.36 22.54 0.17 -1.02 16 23 C -0.09 -0.96 10.03 22.19 0.22 -0.74 16 24 C -0.11 -1.60 6.33 -19.62 -0.12 -1.73 16 25 C -0.15 -2.93 6.31 -19.74 -0.12 -3.05 16 26 C -0.06 -1.54 9.61 22.48 0.22 -1.32 16 27 C 0.09 1.49 7.63 71.37 0.54 2.04 16 28 O -0.38 -6.40 11.72 -148.98 -1.75 -8.15 16 29 C 0.09 0.94 7.63 71.37 0.54 1.48 16 30 C 0.12 4.25 5.19 86.36 0.45 4.70 16 31 H 0.08 2.04 6.60 -2.39 -0.02 2.02 16 32 H 0.04 1.51 6.23 -2.39 -0.01 1.50 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.37 21.81 6.48 -92.70 -0.60 21.21 16 35 H 0.25 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.09 1.53 6.63 -2.39 -0.02 1.52 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.11 1.43 4.52 -2.39 -0.01 1.42 16 41 H 0.10 1.08 8.05 -2.39 -0.02 1.06 16 42 H 0.17 1.66 6.11 -2.91 -0.02 1.64 16 43 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 44 H 0.11 3.24 8.02 -2.91 -0.02 3.22 16 45 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.09 2.72 6.06 -2.39 -0.01 2.70 16 50 H 0.04 2.09 5.82 -2.39 -0.01 2.08 16 Total: -1.00 -84.14 387.62 1.99 -82.15 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.36 Total: 31.35 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 5.20 Total: -4.47 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -3.79 Total: -124.04 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -1.81 Total: -35.31 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -84.14 1.99 -82.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568411939.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.522 kcal (2) G-P(sol) polarization free energy of solvation -84.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds