Wall clock time and date at job start Sat Apr 11 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46500 * 109.46995 * 239.99912 * 2 1 3 5 5 C 1.36938 * 119.99857 * 84.99981 * 4 2 1 6 6 H 1.07994 * 120.00093 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99784 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99654 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00094 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.46950 * 90.00606 * 9 7 5 11 11 H 1.48497 * 109.47117 * 210.00186 * 9 7 5 12 12 H 1.48498 * 109.46957 * 330.00149 * 9 7 5 13 13 C 1.52997 * 109.46980 * 120.00194 * 2 1 3 14 14 H 1.09003 * 109.51990 * 180.02562 * 13 2 1 15 15 C 1.53036 * 109.49943 * 300.15600 * 13 2 1 16 16 C 1.53037 * 109.54091 * 181.31864 * 15 13 2 17 17 C 1.53628 * 109.24117 * 298.51586 * 16 15 13 18 18 N 1.46924 * 108.54507 * 54.85602 * 17 16 15 19 19 C 1.34775 * 120.63090 * 126.36846 * 18 17 16 20 20 O 1.21556 * 119.99723 * 185.57209 * 19 18 17 21 21 C 1.47839 * 119.99826 * 5.57542 * 19 18 17 22 22 C 1.39598 * 120.13720 * 41.75825 * 21 19 18 23 23 C 1.37998 * 119.89538 * 179.97438 * 22 21 19 24 24 C 1.38142 * 120.10761 * 359.97438 * 23 22 21 25 25 C 1.38754 * 120.27574 * 0.02562 * 24 23 22 26 26 C 1.37702 * 120.18082 * 359.97438 * 25 24 23 27 27 C 1.51109 * 107.25830 * 179.97438 * 25 24 23 28 28 O 1.43936 * 105.95055 * 17.71902 * 27 25 24 29 29 C 1.43922 * 104.97272 * 331.48528 * 28 27 25 30 30 C 1.46932 * 118.73649 * 306.09452 * 18 17 16 31 31 H 1.09003 * 109.47517 * 59.99682 * 1 2 3 32 32 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47114 * 299.99971 * 1 2 3 34 34 H 0.96997 * 120.00223 * 265.00239 * 4 2 1 35 35 H 0.97004 * 119.99876 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46271 * 301.34462 * 15 13 2 37 37 H 1.09004 * 109.45831 * 61.31162 * 15 13 2 38 38 H 1.08994 * 109.49974 * 58.58910 * 16 15 13 39 39 H 1.09000 * 109.49749 * 178.68499 * 16 15 13 40 40 H 1.09007 * 109.73868 * 295.11329 * 17 16 15 41 41 H 1.09006 * 109.66172 * 174.55127 * 17 16 15 42 42 H 1.07999 * 120.05090 * 359.69788 * 22 21 19 43 43 H 1.07997 * 119.94779 * 179.97438 * 23 22 21 44 44 H 1.08010 * 120.09613 * 180.02562 * 26 25 24 45 45 H 1.08992 * 110.15605 * 136.83702 * 27 25 24 46 46 H 1.08997 * 110.15422 * 258.60445 * 27 25 24 47 47 H 1.09002 * 110.15417 * 147.64878 * 29 28 27 48 48 H 1.09005 * 110.15143 * 269.39808 * 29 28 27 49 49 H 1.08997 * 109.58326 * 173.65129 * 30 18 17 50 50 H 1.09006 * 109.58370 * 294.07340 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8926 1.0405 -2.4241 7 6 2.6112 -0.6620 -3.5093 8 7 2.7374 -0.0053 -4.6429 9 14 3.0555 -2.4745 -3.4254 10 1 1.8581 -3.2929 -3.7443 11 1 4.1304 -2.7666 -4.4074 12 1 3.5310 -2.8048 -2.0580 13 6 2.0399 -0.7213 1.2492 14 1 3.1299 -0.7214 1.2503 15 6 1.5269 -0.0027 2.4992 16 6 2.0634 -0.7039 3.7492 17 6 1.5484 -2.1510 3.7782 18 7 1.9180 -2.8040 2.5149 19 6 2.5956 -3.9690 2.5167 20 8 2.9839 -4.4478 1.4691 21 6 2.8664 -4.6647 3.7928 22 6 1.8751 -4.7428 4.7726 23 6 2.1331 -5.3938 5.9617 24 6 3.3698 -5.9681 6.1831 25 6 4.3593 -5.8939 5.2132 26 6 4.1144 -5.2471 4.0225 27 6 5.5744 -6.6091 5.7568 28 8 5.0999 -7.4251 6.8435 29 6 3.9464 -6.7315 7.3531 30 6 1.5297 -2.1657 1.2498 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2489 -1.6318 -1.1526 35 1 3.0607 -0.4626 -5.4350 36 1 1.8682 1.0324 2.4888 37 1 0.4372 -0.0255 2.5097 38 1 3.1531 -0.7034 3.7273 39 1 1.7167 -0.1777 4.6386 40 1 0.4638 -2.1537 3.8873 41 1 2.0030 -2.6855 4.6125 42 1 0.9093 -4.2906 4.6020 43 1 1.3669 -5.4544 6.7204 44 1 4.8856 -5.1905 3.2683 45 1 6.0189 -7.2353 4.9834 46 1 6.3041 -5.8860 6.1211 47 1 3.2157 -7.4459 7.7322 48 1 4.2421 -6.0409 8.1430 49 1 1.9718 -2.7099 0.4152 50 1 0.4436 -2.1696 1.1569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568411940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:07 Heat of formation + Delta-G solvation = -25.533165 kcal Electronic energy + Delta-G solvation = -30595.414364 eV Core-core repulsion = 26588.197773 eV Total energy + Delta-G solvation = -4007.216592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31220 -40.25649 -38.26501 -37.29492 -35.65664 -33.17294 -32.07372 -31.94837 -31.86252 -30.15198 -28.49859 -28.21438 -26.20169 -25.16244 -24.27287 -23.09813 -22.58120 -22.14565 -21.07581 -19.83445 -18.82553 -17.86516 -17.32266 -16.96853 -16.84188 -16.32304 -16.05946 -15.33577 -15.04834 -14.76938 -14.69991 -14.59803 -14.24842 -14.06730 -13.86884 -13.46307 -13.39189 -13.16480 -13.08455 -12.98371 -12.71590 -12.65522 -12.49426 -12.20597 -12.06890 -11.67420 -11.43158 -11.33345 -11.15343 -10.90139 -10.72548 -10.57440 -10.52068 -10.37244 -10.15333 -10.00271 -9.83533 -9.51364 -9.37681 -8.99303 -8.89194 -8.60909 -7.23683 -5.73010 -3.08409 0.44827 0.83426 2.50769 2.81050 3.27828 3.44764 3.45481 3.52112 3.55211 3.70670 4.11444 4.24630 4.44473 4.58066 4.65391 4.75135 4.80044 4.82069 4.85893 4.90034 4.92790 5.05449 5.07625 5.18196 5.21176 5.28513 5.34381 5.43555 5.50561 5.55291 5.57112 5.71219 5.72413 5.74099 5.77858 5.79740 5.87720 5.96970 5.97962 6.14768 6.18163 6.22251 6.25405 6.33837 6.44081 6.46929 6.60699 6.77859 7.03516 7.29546 8.02922 8.05255 8.46051 9.24829 9.97988 10.16908 11.45156 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002791 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.149331 B =10031.455051 C =11357.330374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.185 3.815 3 H 0.058 0.942 4 N -0.750 5.750 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.877 3.123 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.273 1.273 13 C -0.107 4.107 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.097 3.903 18 N -0.603 5.603 19 C 0.554 3.446 20 O -0.526 6.526 21 C -0.114 4.114 22 C -0.084 4.084 23 C -0.099 4.099 24 C -0.115 4.115 25 C -0.137 4.137 26 C -0.042 4.042 27 C 0.092 3.908 28 O -0.360 6.360 29 C 0.089 3.911 30 C 0.114 3.886 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.101 0.899 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 -8.790 29.768 31.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.076 0.924 4 N -0.393 5.393 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.583 5.583 9 Si 0.707 3.293 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.199 1.199 13 C -0.127 4.127 14 H 0.093 0.907 15 C -0.152 4.152 16 C -0.172 4.172 17 C -0.025 4.025 18 N -0.336 5.336 19 C 0.342 3.658 20 O -0.402 6.402 21 C -0.118 4.118 22 C -0.102 4.102 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.138 4.138 26 C -0.060 4.060 27 C 0.015 3.985 28 O -0.278 6.278 29 C 0.013 3.987 30 C -0.008 4.008 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.118 0.882 48 H 0.098 0.902 49 H 0.112 0.888 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.395 -9.070 29.073 30.487 hybrid contribution 0.167 -1.015 -0.247 1.058 sum -1.228 -10.085 28.826 30.564 Atomic orbital electron populations 1.22544 0.98995 1.00852 1.00575 1.20143 0.92017 0.95586 0.84697 0.92379 1.42886 1.79704 1.09598 1.07156 1.19053 1.37022 0.95555 0.85566 0.89202 1.24644 1.01347 0.97407 0.95581 1.69702 1.52747 1.35550 1.00258 0.86654 0.78295 0.86823 0.77507 1.21059 1.21727 1.19866 1.21818 1.01133 0.94035 0.95715 0.90702 1.21617 1.00987 0.99375 0.93239 1.22003 1.01474 0.94841 0.98907 1.22173 1.00195 0.94013 0.86141 1.48071 1.55689 1.21740 1.08058 1.18296 0.78070 0.80927 0.88506 1.90853 1.50731 1.65860 1.32801 1.19900 0.95374 1.01542 0.94942 1.21387 0.99076 0.97526 0.92259 1.20316 0.95530 0.98273 0.97609 1.21268 0.94787 0.98960 0.96569 1.20957 0.96958 1.00735 0.95103 1.20394 0.96151 0.94171 0.95326 1.21780 0.93345 0.93884 0.89459 1.89098 1.44116 1.46018 1.48616 1.21806 0.87903 0.95449 0.93532 1.21882 1.00080 0.93516 0.85301 0.92340 0.93462 0.93875 0.80479 0.93115 0.91317 0.91216 0.91517 0.90781 0.91084 0.89300 0.84416 0.84915 0.84646 0.88088 0.90135 0.88211 0.90158 0.88767 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 8.79 37.16 0.33 -2.47 16 2 C 0.19 3.42 2.72 -67.93 -0.19 3.24 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 N -0.75 -17.82 4.85 -53.43 -0.26 -18.07 16 5 C -0.24 -6.87 10.41 -15.06 -0.16 -7.03 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -29.86 13.97 55.49 0.78 -29.09 16 9 Si 0.88 23.28 27.74 -169.99 -4.71 18.56 16 10 H -0.28 -7.50 7.11 56.52 0.40 -7.09 16 11 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 12 H -0.27 -7.09 6.52 56.52 0.37 -6.72 16 13 C -0.11 -1.62 2.33 -90.51 -0.21 -1.83 16 14 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.11 -1.26 4.77 -26.69 -0.13 -1.39 16 16 C -0.13 -1.20 6.10 -26.39 -0.16 -1.36 16 17 C 0.10 0.87 4.96 -3.48 -0.02 0.85 16 18 N -0.60 -7.87 2.97 -173.61 -0.51 -8.39 16 19 C 0.55 8.26 7.30 -12.33 -0.09 8.17 16 20 O -0.53 -10.30 16.37 5.32 0.09 -10.22 16 21 C -0.11 -1.32 5.08 -104.94 -0.53 -1.85 16 22 C -0.08 -0.72 7.41 -39.16 -0.29 -1.01 16 23 C -0.10 -0.71 10.03 -39.70 -0.40 -1.11 16 24 C -0.12 -0.94 6.33 -104.25 -0.66 -1.60 16 25 C -0.14 -1.28 6.31 -104.43 -0.66 -1.94 16 26 C -0.04 -0.46 9.65 -39.26 -0.38 -0.84 16 27 C 0.09 0.72 7.63 36.21 0.28 1.00 16 28 O -0.36 -3.26 11.72 -35.23 -0.41 -3.68 16 29 C 0.09 0.60 7.63 36.22 0.28 0.87 16 30 C 0.11 1.75 5.22 -3.71 -0.02 1.73 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.76 6.32 -51.93 -0.33 0.43 16 33 H 0.04 0.57 6.46 -51.93 -0.34 0.23 16 34 H 0.36 8.74 4.03 -40.82 -0.16 8.58 16 35 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.71 6.50 -51.93 -0.34 0.38 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 41 H 0.09 0.68 4.80 -51.93 -0.25 0.43 16 42 H 0.14 0.94 6.71 -52.49 -0.35 0.59 16 43 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 1.82 5.58 -51.93 -0.29 1.53 16 50 H 0.08 1.09 6.18 -51.93 -0.32 0.77 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -35.53 385.05 -9.80 -45.33 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.46 Total: 6.22 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.10 Total: -6.47 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.00 Total: -55.55 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.33 Total: -13.89 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.71 Total: 18.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.53 -9.80 -45.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568411940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.793 kcal (2) G-P(sol) polarization free energy of solvation -35.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds