Wall clock time and date at job start Sat Apr 11 2020 07:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46500 * 109.46995 * 239.99912 * 2 1 3 5 5 C 1.36938 * 119.99857 * 84.99981 * 4 2 1 6 6 H 1.07994 * 120.00093 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99784 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99654 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00094 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.46950 * 90.00606 * 9 7 5 11 11 H 1.48497 * 109.47117 * 210.00186 * 9 7 5 12 12 H 1.48498 * 109.46957 * 330.00149 * 9 7 5 13 13 C 1.52997 * 109.46980 * 120.00194 * 2 1 3 14 14 H 1.09003 * 109.51990 * 180.02562 * 13 2 1 15 15 C 1.53036 * 109.49943 * 300.15600 * 13 2 1 16 16 C 1.53037 * 109.54091 * 181.31864 * 15 13 2 17 17 C 1.53628 * 109.24117 * 298.51586 * 16 15 13 18 18 N 1.46924 * 108.54507 * 54.85602 * 17 16 15 19 19 C 1.34775 * 120.63090 * 126.36846 * 18 17 16 20 20 O 1.21556 * 119.99723 * 185.57209 * 19 18 17 21 21 C 1.47839 * 119.99826 * 5.57542 * 19 18 17 22 22 C 1.39598 * 120.13720 * 41.75825 * 21 19 18 23 23 C 1.37998 * 119.89538 * 179.97438 * 22 21 19 24 24 C 1.38142 * 120.10761 * 359.97438 * 23 22 21 25 25 C 1.38754 * 120.27574 * 0.02562 * 24 23 22 26 26 C 1.37702 * 120.18082 * 359.97438 * 25 24 23 27 27 C 1.51109 * 107.25830 * 179.97438 * 25 24 23 28 28 O 1.43936 * 105.95055 * 17.71902 * 27 25 24 29 29 C 1.43922 * 104.97272 * 331.48528 * 28 27 25 30 30 C 1.46932 * 118.73649 * 306.09452 * 18 17 16 31 31 H 1.09003 * 109.47517 * 59.99682 * 1 2 3 32 32 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47114 * 299.99971 * 1 2 3 34 34 H 0.96997 * 120.00223 * 265.00239 * 4 2 1 35 35 H 0.97004 * 119.99876 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46271 * 301.34462 * 15 13 2 37 37 H 1.09004 * 109.45831 * 61.31162 * 15 13 2 38 38 H 1.08994 * 109.49974 * 58.58910 * 16 15 13 39 39 H 1.09000 * 109.49749 * 178.68499 * 16 15 13 40 40 H 1.09007 * 109.73868 * 295.11329 * 17 16 15 41 41 H 1.09006 * 109.66172 * 174.55127 * 17 16 15 42 42 H 1.07999 * 120.05090 * 359.69788 * 22 21 19 43 43 H 1.07997 * 119.94779 * 179.97438 * 23 22 21 44 44 H 1.08010 * 120.09613 * 180.02562 * 26 25 24 45 45 H 1.08992 * 110.15605 * 136.83702 * 27 25 24 46 46 H 1.08997 * 110.15422 * 258.60445 * 27 25 24 47 47 H 1.09002 * 110.15417 * 147.64878 * 29 28 27 48 48 H 1.09005 * 110.15143 * 269.39808 * 29 28 27 49 49 H 1.08997 * 109.58326 * 173.65129 * 30 18 17 50 50 H 1.09006 * 109.58370 * 294.07340 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8926 1.0405 -2.4241 7 6 2.6112 -0.6620 -3.5093 8 7 2.7374 -0.0053 -4.6429 9 14 3.0555 -2.4745 -3.4254 10 1 1.8581 -3.2929 -3.7443 11 1 4.1304 -2.7666 -4.4074 12 1 3.5310 -2.8048 -2.0580 13 6 2.0399 -0.7213 1.2492 14 1 3.1299 -0.7214 1.2503 15 6 1.5269 -0.0027 2.4992 16 6 2.0634 -0.7039 3.7492 17 6 1.5484 -2.1510 3.7782 18 7 1.9180 -2.8040 2.5149 19 6 2.5956 -3.9690 2.5167 20 8 2.9839 -4.4478 1.4691 21 6 2.8664 -4.6647 3.7928 22 6 1.8751 -4.7428 4.7726 23 6 2.1331 -5.3938 5.9617 24 6 3.3698 -5.9681 6.1831 25 6 4.3593 -5.8939 5.2132 26 6 4.1144 -5.2471 4.0225 27 6 5.5744 -6.6091 5.7568 28 8 5.0999 -7.4251 6.8435 29 6 3.9464 -6.7315 7.3531 30 6 1.5297 -2.1657 1.2498 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2489 -1.6318 -1.1526 35 1 3.0607 -0.4626 -5.4350 36 1 1.8682 1.0324 2.4888 37 1 0.4372 -0.0255 2.5097 38 1 3.1531 -0.7034 3.7273 39 1 1.7167 -0.1777 4.6386 40 1 0.4638 -2.1537 3.8873 41 1 2.0030 -2.6855 4.6125 42 1 0.9093 -4.2906 4.6020 43 1 1.3669 -5.4544 6.7204 44 1 4.8856 -5.1905 3.2683 45 1 6.0189 -7.2353 4.9834 46 1 6.3041 -5.8860 6.1211 47 1 3.2157 -7.4459 7.7322 48 1 4.2421 -6.0409 8.1430 49 1 1.9718 -2.7099 0.4152 50 1 0.4436 -2.1696 1.1569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568411940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:06 Heat of formation + Delta-G solvation = -49.490367 kcal Electronic energy + Delta-G solvation = -30596.453227 eV Core-core repulsion = 26588.197773 eV Total energy + Delta-G solvation = -4008.255454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08227 -41.16897 -39.40777 -38.12160 -37.10054 -34.77858 -33.41888 -32.73843 -32.64292 -31.75529 -29.68143 -29.02178 -27.11678 -26.31116 -25.54426 -24.49713 -23.43444 -22.76801 -22.22249 -21.05423 -20.03755 -19.63478 -18.44233 -17.61702 -17.56344 -17.28005 -16.79165 -16.72820 -16.24871 -16.24634 -15.77815 -15.52190 -15.32820 -15.09896 -14.86948 -14.65503 -14.40414 -14.37268 -14.14746 -14.05926 -13.87498 -13.62539 -13.58024 -13.34510 -13.04868 -12.98049 -12.83172 -12.61944 -12.39422 -12.09840 -12.04203 -11.92269 -11.86817 -11.77238 -11.47073 -11.29901 -11.18650 -11.02974 -10.93410 -10.05707 -9.75691 -9.57519 -9.34292 -8.07433 -5.37611 -0.28170 0.17177 1.29226 1.32734 1.38849 1.50742 1.83763 2.40713 2.52074 2.89666 3.06535 3.24864 3.40848 3.51628 3.54301 3.77551 3.81934 3.86295 3.96448 4.07685 4.12494 4.23721 4.31373 4.33756 4.37639 4.40654 4.53315 4.53802 4.59070 4.65671 4.69207 4.71176 4.77607 4.81224 4.85939 4.87527 5.02274 5.06364 5.10373 5.13272 5.16625 5.20939 5.22225 5.33840 5.41697 5.47432 5.60338 5.66331 5.73311 5.75684 6.18655 6.28041 6.97399 7.04466 7.83275 7.98834 9.14461 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002791 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.149331 B =10031.455051 C =11357.330374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.048 0.952 4 N -0.757 5.757 5 C -0.218 4.218 6 H 0.066 0.934 7 C -0.057 4.057 8 N -0.980 5.980 9 Si 0.938 3.062 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.272 1.272 13 C -0.095 4.095 14 H 0.046 0.954 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.091 3.909 18 N -0.598 5.598 19 C 0.547 3.453 20 O -0.591 6.591 21 C -0.134 4.134 22 C -0.075 4.075 23 C -0.087 4.087 24 C -0.112 4.112 25 C -0.149 4.149 26 C -0.061 4.061 27 C 0.090 3.910 28 O -0.380 6.380 29 C 0.086 3.914 30 C 0.117 3.883 31 H 0.031 0.969 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.161 0.839 43 H 0.173 0.827 44 H 0.115 0.885 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.047 0.953 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -9.313 34.935 36.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 H 0.066 0.934 4 N -0.401 5.401 5 C -0.350 4.350 6 H 0.084 0.916 7 C -0.249 4.249 8 N -0.632 5.632 9 Si 0.768 3.232 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.198 1.198 13 C -0.115 4.115 14 H 0.065 0.935 15 C -0.146 4.146 16 C -0.167 4.167 17 C -0.030 4.030 18 N -0.328 5.328 19 C 0.337 3.663 20 O -0.472 6.472 21 C -0.137 4.137 22 C -0.094 4.094 23 C -0.105 4.105 24 C -0.112 4.112 25 C -0.149 4.149 26 C -0.080 4.080 27 C 0.014 3.986 28 O -0.299 6.299 29 C 0.011 3.989 30 C -0.006 4.006 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.193 0.807 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.179 0.821 43 H 0.191 0.809 44 H 0.133 0.867 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.138 0.862 48 H 0.120 0.880 49 H 0.066 0.934 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.572 -9.564 34.339 35.825 hybrid contribution 0.820 -0.778 -1.718 2.056 sum -2.752 -10.341 32.622 34.332 Atomic orbital electron populations 1.22382 0.96559 1.01427 1.01416 1.20467 0.93639 0.94975 0.84172 0.93365 1.43034 1.79976 1.09585 1.07513 1.19083 1.34211 0.94625 0.87035 0.91614 1.25272 1.02910 1.01105 0.95589 1.69837 1.55187 1.37131 1.01009 0.85665 0.77932 0.82494 0.77141 1.20538 1.21955 1.19832 1.21651 0.99418 0.94202 0.96266 0.93511 1.21621 1.02137 0.99231 0.91660 1.22005 1.00577 0.94919 0.99169 1.22579 1.02310 0.93689 0.84375 1.48158 1.54754 1.21163 1.08760 1.18931 0.77172 0.81176 0.89007 1.90808 1.53439 1.67675 1.35301 1.19695 0.96638 1.03034 0.94360 1.21624 0.98914 0.97157 0.91673 1.20717 0.95820 0.96350 0.97615 1.21642 0.94816 0.98277 0.96511 1.21071 0.98292 1.00713 0.94821 1.20322 0.96113 0.95670 0.95929 1.21847 0.93201 0.94065 0.89459 1.89078 1.45134 1.46845 1.48807 1.22062 0.87559 0.96131 0.93171 1.21663 1.00487 0.93004 0.85406 0.95007 0.92975 0.89489 0.80731 0.93398 0.90759 0.89116 0.93103 0.86907 0.87862 0.87500 0.82106 0.80912 0.86678 0.88133 0.88735 0.86207 0.87992 0.93393 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 8.79 71.98 0.63 -4.31 16 2 C 0.18 6.45 2.72 44.99 0.12 6.58 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.76 -36.98 4.85 -322.95 -1.57 -38.55 16 5 C -0.22 -12.82 10.41 84.03 0.87 -11.95 16 6 H 0.07 4.13 8.06 -2.91 -0.02 4.10 16 7 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 8 N -0.98 -64.91 13.97 21.65 0.30 -64.61 16 9 Si 0.94 50.31 27.74 68.60 1.90 52.21 16 10 H -0.28 -14.60 7.11 99.48 0.71 -13.90 16 11 H -0.29 -15.68 7.11 99.48 0.71 -14.98 16 12 H -0.27 -14.42 6.52 99.48 0.65 -13.77 16 13 C -0.10 -2.82 2.33 -10.72 -0.02 -2.85 16 14 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 15 C -0.11 -2.03 4.77 30.62 0.15 -1.88 16 16 C -0.13 -1.79 6.10 30.82 0.19 -1.60 16 17 C 0.09 1.25 4.96 86.51 0.43 1.68 16 18 N -0.60 -14.91 2.97 -821.45 -2.44 -17.35 16 19 C 0.55 16.64 7.30 86.78 0.63 17.28 16 20 O -0.59 -24.79 16.37 -3.89 -0.06 -24.85 16 21 C -0.13 -3.00 5.08 -20.07 -0.10 -3.10 16 22 C -0.08 -1.02 7.41 22.54 0.17 -0.85 16 23 C -0.09 -0.85 10.03 22.19 0.22 -0.62 16 24 C -0.11 -1.45 6.33 -19.63 -0.12 -1.58 16 25 C -0.15 -2.63 6.31 -19.74 -0.12 -2.75 16 26 C -0.06 -1.39 9.65 22.48 0.22 -1.17 16 27 C 0.09 1.35 7.63 71.37 0.54 1.89 16 28 O -0.38 -6.12 11.72 -148.98 -1.75 -7.86 16 29 C 0.09 0.84 7.63 71.37 0.54 1.39 16 30 C 0.12 3.57 5.22 86.36 0.45 4.02 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.58 6.32 -2.39 -0.02 1.56 16 33 H 0.09 1.96 6.46 -2.39 -0.02 1.94 16 34 H 0.36 17.96 4.03 -92.71 -0.37 17.59 16 35 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.36 6.50 -2.39 -0.02 1.34 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.86 8.13 -2.38 -0.02 0.84 16 41 H 0.11 1.15 4.80 -2.38 -0.01 1.14 16 42 H 0.16 1.39 6.71 -2.91 -0.02 1.37 16 43 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 45 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 49 H 0.05 1.93 5.58 -2.39 -0.01 1.92 16 50 H 0.09 2.48 6.18 -2.38 -0.01 2.47 16 Total: -1.00 -84.36 385.05 2.19 -82.17 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.53 Total: 21.74 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.26 Total: -2.90 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -3.70 Total: -120.50 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.81 Total: -32.71 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 1.90 Total: 52.21 kcal Total: -84.36 2.19 -82.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568411940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.681 kcal (2) G-P(sol) polarization free energy of solvation -84.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds