Wall clock time and date at job start Sat Apr 11 2020 07:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 N 1.46496 * 109.47334 * 239.99930 * 2 1 3 5 5 C 1.36939 * 120.00011 * 85.27826 * 4 2 1 6 6 H 1.08001 * 119.99726 * 359.72275 * 5 4 2 7 7 C 1.38819 * 119.99824 * 179.72638 * 5 4 2 8 8 N 1.31621 * 119.99678 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00199 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47192 * 89.99981 * 9 7 5 11 11 H 1.48502 * 109.47149 * 210.00032 * 9 7 5 12 12 H 1.48494 * 109.47009 * 330.00269 * 9 7 5 13 13 C 1.53004 * 109.47101 * 120.00088 * 2 1 3 14 14 H 1.08997 * 110.88508 * 60.69570 * 13 2 1 15 15 C 1.55154 * 111.00644 * 184.58203 * 13 2 1 16 16 C 1.54322 * 102.94151 * 153.57558 * 15 13 2 17 17 N 1.47021 * 107.27440 * 337.80526 * 16 15 13 18 18 C 1.34772 * 125.65490 * 178.97550 * 17 16 15 19 19 O 1.21546 * 120.00576 * 175.11997 * 18 17 16 20 20 C 1.47851 * 119.99611 * 355.11928 * 18 17 16 21 21 C 1.39460 * 120.01100 * 48.49758 * 20 18 17 22 22 C 1.37940 * 119.69580 * 179.69030 * 21 20 18 23 23 C 1.38211 * 120.05707 * 0.58835 * 22 21 20 24 24 C 1.38763 * 120.61435 * 359.78457 * 23 22 21 25 25 C 1.37666 * 119.85734 * 359.83256 * 24 23 22 26 26 C 1.50715 * 121.42676 * 180.35360 * 25 24 23 27 27 C 1.52976 * 109.77005 * 343.02129 * 26 25 24 28 28 O 1.43213 * 108.45442 * 49.13752 * 27 26 25 29 29 C 1.42714 * 113.13023 * 289.39019 * 28 27 26 30 30 C 1.47478 * 108.72026 * 358.97751 * 17 16 15 31 31 H 1.09007 * 109.47072 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47405 * 299.99928 * 1 2 3 33 33 H 1.09002 * 109.46889 * 60.00073 * 1 2 3 34 34 H 0.97001 * 120.00024 * 265.00203 * 4 2 1 35 35 H 0.96999 * 120.00001 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.72214 * 271.93733 * 15 13 2 37 37 H 1.08998 * 110.71798 * 35.03702 * 15 13 2 38 38 H 1.08996 * 109.88653 * 97.22471 * 16 15 13 39 39 H 1.09005 * 109.88194 * 218.39335 * 16 15 13 40 40 H 1.08000 * 120.15434 * 359.91902 * 21 20 18 41 41 H 1.08004 * 119.97240 * 180.33593 * 22 21 20 42 42 H 1.08000 * 119.69593 * 179.76865 * 23 22 21 43 43 H 1.09002 * 109.42169 * 103.10647 * 26 25 24 44 44 H 1.09001 * 109.42702 * 222.99091 * 26 25 24 45 45 H 1.09004 * 109.64003 * 168.83097 * 27 26 25 46 46 H 1.09000 * 109.63745 * 289.44967 * 27 26 25 47 47 H 1.09004 * 109.33683 * 172.01387 * 29 28 27 48 48 H 1.08999 * 109.33598 * 291.68010 * 29 28 27 49 49 H 1.08997 * 110.34547 * 265.24859 * 30 17 16 50 50 H 1.08995 * 110.40100 * 142.91316 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1546 -0.0061 -2.3743 6 1 1.8977 1.0418 -2.4228 7 6 2.6227 -0.6592 -3.5063 8 7 2.7532 -0.0013 -4.6388 9 14 3.0676 -2.4714 -3.4222 10 1 1.8722 -3.2902 -3.7478 11 1 4.1476 -2.7619 -4.3992 12 1 3.5365 -2.8030 -2.0528 13 6 2.0400 -0.7213 1.2493 14 1 1.6996 -1.7566 1.2664 15 6 3.5866 -0.6426 1.3445 16 6 3.8461 -0.7626 2.8610 17 7 2.6105 -0.3600 3.5485 18 6 2.4229 -0.3457 4.8830 19 8 1.3877 0.0908 5.3467 20 6 3.4766 -0.8612 5.7831 21 6 4.7987 -0.4497 5.6168 22 6 5.7755 -0.9298 6.4642 23 6 5.4454 -1.8238 7.4652 24 6 4.1336 -2.2443 7.6326 25 6 3.1487 -1.7661 6.7980 26 6 1.7116 -2.1929 6.9531 27 6 1.6373 -3.4592 7.8081 28 8 2.4205 -3.2551 8.9896 29 6 3.8242 -3.2254 8.7335 30 6 1.6098 0.0259 2.5362 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 3.0800 -0.4577 -5.4299 36 1 4.0487 -1.4710 0.8075 37 1 3.9484 0.3121 0.9629 38 1 4.0922 -1.7937 3.1146 39 1 4.6635 -0.1021 3.1506 40 1 5.0560 0.2444 4.8304 41 1 6.8000 -0.6099 6.3428 42 1 6.2154 -2.1988 8.1230 43 1 1.1469 -1.3957 7.4365 44 1 1.2853 -2.3947 5.9704 45 1 0.6011 -3.6544 8.0845 46 1 2.0352 -4.3044 7.2463 47 1 4.3504 -2.9278 9.6406 48 1 4.1573 -4.2187 8.4327 49 1 1.6307 1.1036 2.3742 50 1 0.6143 -0.2929 2.8452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569816321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:09 Heat of formation + Delta-G solvation = -39.273674 kcal Electronic energy + Delta-G solvation = -30419.172356 eV Core-core repulsion = 26411.359931 eV Total energy + Delta-G solvation = -4007.812425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08606 -39.77888 -38.09373 -37.54887 -35.43968 -33.32431 -32.73457 -32.06221 -30.80945 -29.96534 -29.66041 -27.69411 -25.98005 -25.14979 -24.17926 -23.63425 -22.37268 -21.45137 -20.48921 -19.90176 -19.61060 -17.82105 -17.45558 -16.97447 -16.71160 -16.21856 -16.03090 -15.71505 -15.65727 -14.87721 -14.52022 -14.12895 -14.08672 -13.91030 -13.81149 -13.61916 -13.27121 -13.13022 -12.98344 -12.76001 -12.68529 -12.52694 -12.33756 -12.05531 -11.96313 -11.90757 -11.70777 -11.57010 -11.05452 -11.05248 -10.85939 -10.61880 -10.52392 -10.31812 -10.21619 -10.00174 -9.87362 -9.62398 -9.16389 -9.01325 -8.98100 -8.71814 -7.32105 -5.80662 -3.16386 0.62816 0.91755 2.50106 2.81855 3.31944 3.32152 3.35741 3.41675 3.48925 4.16582 4.21104 4.28980 4.49392 4.54704 4.55579 4.64675 4.69293 4.81488 4.88748 4.91818 4.94484 5.05026 5.10052 5.19257 5.28833 5.36675 5.39085 5.41675 5.45308 5.54098 5.54973 5.59193 5.76087 5.79440 5.80777 5.90392 5.94161 6.00281 6.06161 6.08232 6.14093 6.19392 6.30581 6.38354 6.45289 6.48267 6.68397 6.74840 6.96964 7.37146 7.95195 7.97959 8.38241 9.16478 9.88894 10.08591 11.37711 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.002434 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.315457 B =11501.331856 C =11828.570209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.191 3.809 3 H 0.058 0.942 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.080 0.920 15 C -0.119 4.119 16 C 0.096 3.904 17 N -0.610 5.610 18 C 0.573 3.427 19 O -0.533 6.533 20 C -0.120 4.120 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.093 4.093 24 C -0.129 4.129 25 C -0.024 4.024 26 C -0.116 4.116 27 C 0.059 3.941 28 O -0.375 6.375 29 C 0.103 3.897 30 C 0.116 3.884 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.056 0.944 47 H 0.106 0.894 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.209 -6.322 26.948 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.081 3.919 3 H 0.076 0.924 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.715 3.285 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.098 0.902 15 C -0.157 4.157 16 C -0.027 4.027 17 N -0.343 5.343 18 C 0.362 3.638 19 O -0.411 6.411 20 C -0.123 4.123 21 C -0.105 4.105 22 C -0.143 4.143 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.025 4.025 26 C -0.153 4.153 27 C -0.018 4.018 28 O -0.293 6.293 29 C 0.027 3.973 30 C -0.007 4.007 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.074 0.926 47 H 0.124 0.876 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.568 -5.877 27.258 28.256 hybrid contribution 0.655 -1.250 -0.594 1.531 sum 5.223 -7.127 26.664 28.090 Atomic orbital electron populations 1.22460 0.98669 1.01003 1.00684 1.20099 0.92028 0.95437 0.84347 0.92363 1.42731 1.79747 1.09343 1.07075 1.19050 1.36772 0.95600 0.85644 0.89206 1.24665 1.01472 0.97400 0.95592 1.69698 1.52545 1.35536 1.00390 0.86564 0.78107 0.86945 0.76931 1.21196 1.21841 1.20377 1.22720 0.95214 1.00299 0.94422 0.90173 1.22627 0.96378 1.04265 0.92466 1.22300 0.86680 0.99992 0.93685 1.48509 1.15787 1.65343 1.04698 1.17908 0.86615 0.78611 0.80705 1.90791 1.28338 1.46723 1.75207 1.19805 0.93847 1.00647 0.97981 1.21391 0.91380 0.98812 0.98882 1.21037 0.99604 0.98044 0.95574 1.21139 0.95304 0.96756 0.97913 1.20193 0.93662 1.00546 0.98524 1.19404 0.95520 0.94758 0.92778 1.21181 0.92909 0.99419 1.01819 1.22707 0.96695 0.95908 0.86482 1.88079 1.16440 1.93497 1.31262 1.21425 0.82846 0.96448 0.96605 1.22336 0.92162 0.99698 0.86471 0.93554 0.94007 0.92188 0.80721 0.93065 0.89799 0.89724 0.91497 0.91295 0.84986 0.85108 0.85396 0.88334 0.89653 0.87940 0.92563 0.87567 0.91572 0.90860 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.31 37.16 0.35 -2.44 16 2 C 0.19 3.33 2.40 -67.93 -0.16 3.17 16 3 H 0.06 1.06 8.07 -51.93 -0.42 0.65 16 4 N -0.75 -16.32 4.70 -53.42 -0.25 -16.58 16 5 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 6 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -28.64 13.97 55.49 0.78 -27.86 16 9 Si 0.88 21.34 27.74 -169.99 -4.71 16.63 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.17 6.52 56.52 0.37 -5.81 16 13 C -0.11 -1.50 2.64 -88.47 -0.23 -1.74 16 14 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.12 -1.55 6.21 -24.90 -0.15 -1.71 16 16 C 0.10 1.05 5.67 -3.07 -0.02 1.04 16 17 N -0.61 -7.81 3.33 -171.59 -0.57 -8.38 16 18 C 0.57 7.96 6.51 -12.33 -0.08 7.88 16 19 O -0.53 -8.94 15.94 5.33 0.08 -8.86 16 20 C -0.12 -1.42 5.40 -104.90 -0.57 -1.98 16 21 C -0.09 -0.83 8.52 -39.24 -0.33 -1.17 16 22 C -0.12 -0.98 10.03 -39.70 -0.40 -1.38 16 23 C -0.09 -0.70 9.66 -39.40 -0.38 -1.09 16 24 C -0.13 -1.19 5.80 -104.65 -0.61 -1.79 16 25 C -0.02 -0.27 5.81 -104.21 -0.60 -0.87 16 26 C -0.12 -1.25 4.66 -27.89 -0.13 -1.38 16 27 C 0.06 0.50 6.85 37.15 0.25 0.76 16 28 O -0.37 -3.67 10.80 -35.23 -0.38 -4.05 16 29 C 0.10 0.78 6.66 35.99 0.24 1.02 16 30 C 0.12 1.54 5.40 -2.50 -0.01 1.52 16 31 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.04 0.59 7.33 -51.93 -0.38 0.21 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.36 7.78 5.66 -40.82 -0.23 7.55 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.16 8.03 -51.93 -0.42 0.75 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.65 6.03 -51.93 -0.31 0.33 16 40 H 0.13 1.13 6.03 -52.49 -0.32 0.81 16 41 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.10 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.09 0.96 7.40 -51.93 -0.38 0.57 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 47 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 50 H 0.08 1.07 7.99 -51.93 -0.42 0.66 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -32.91 392.86 -10.18 -43.09 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.94 Total: 6.80 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.10 Total: -6.72 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.05 Total: -52.82 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.30 Total: -12.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.91 -10.18 -43.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569816321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.819 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds