Wall clock time and date at job start Sat Apr 11 2020 07:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 N 1.46496 * 109.47334 * 239.99930 * 2 1 3 5 5 C 1.36939 * 120.00011 * 85.27826 * 4 2 1 6 6 H 1.08001 * 119.99726 * 359.72275 * 5 4 2 7 7 C 1.38819 * 119.99824 * 179.72638 * 5 4 2 8 8 N 1.31621 * 119.99678 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00199 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47192 * 89.99981 * 9 7 5 11 11 H 1.48502 * 109.47149 * 210.00032 * 9 7 5 12 12 H 1.48494 * 109.47009 * 330.00269 * 9 7 5 13 13 C 1.53004 * 109.47101 * 120.00088 * 2 1 3 14 14 H 1.08997 * 110.88508 * 60.69570 * 13 2 1 15 15 C 1.55154 * 111.00644 * 184.58203 * 13 2 1 16 16 C 1.54322 * 102.94151 * 153.57558 * 15 13 2 17 17 N 1.47021 * 107.27440 * 337.80526 * 16 15 13 18 18 C 1.34772 * 125.65490 * 178.97550 * 17 16 15 19 19 O 1.21546 * 120.00576 * 175.11997 * 18 17 16 20 20 C 1.47851 * 119.99611 * 355.11928 * 18 17 16 21 21 C 1.39460 * 120.01100 * 48.49758 * 20 18 17 22 22 C 1.37940 * 119.69580 * 179.69030 * 21 20 18 23 23 C 1.38211 * 120.05707 * 0.58835 * 22 21 20 24 24 C 1.38763 * 120.61435 * 359.78457 * 23 22 21 25 25 C 1.37666 * 119.85734 * 359.83256 * 24 23 22 26 26 C 1.50715 * 121.42676 * 180.35360 * 25 24 23 27 27 C 1.52976 * 109.77005 * 343.02129 * 26 25 24 28 28 O 1.43213 * 108.45442 * 49.13752 * 27 26 25 29 29 C 1.42714 * 113.13023 * 289.39019 * 28 27 26 30 30 C 1.47478 * 108.72026 * 358.97751 * 17 16 15 31 31 H 1.09007 * 109.47072 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47405 * 299.99928 * 1 2 3 33 33 H 1.09002 * 109.46889 * 60.00073 * 1 2 3 34 34 H 0.97001 * 120.00024 * 265.00203 * 4 2 1 35 35 H 0.96999 * 120.00001 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.72214 * 271.93733 * 15 13 2 37 37 H 1.08998 * 110.71798 * 35.03702 * 15 13 2 38 38 H 1.08996 * 109.88653 * 97.22471 * 16 15 13 39 39 H 1.09005 * 109.88194 * 218.39335 * 16 15 13 40 40 H 1.08000 * 120.15434 * 359.91902 * 21 20 18 41 41 H 1.08004 * 119.97240 * 180.33593 * 22 21 20 42 42 H 1.08000 * 119.69593 * 179.76865 * 23 22 21 43 43 H 1.09002 * 109.42169 * 103.10647 * 26 25 24 44 44 H 1.09001 * 109.42702 * 222.99091 * 26 25 24 45 45 H 1.09004 * 109.64003 * 168.83097 * 27 26 25 46 46 H 1.09000 * 109.63745 * 289.44967 * 27 26 25 47 47 H 1.09004 * 109.33683 * 172.01387 * 29 28 27 48 48 H 1.08999 * 109.33598 * 291.68010 * 29 28 27 49 49 H 1.08997 * 110.34547 * 265.24859 * 30 17 16 50 50 H 1.08995 * 110.40100 * 142.91316 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1546 -0.0061 -2.3743 6 1 1.8977 1.0418 -2.4228 7 6 2.6227 -0.6592 -3.5063 8 7 2.7532 -0.0013 -4.6388 9 14 3.0676 -2.4714 -3.4222 10 1 1.8722 -3.2902 -3.7478 11 1 4.1476 -2.7619 -4.3992 12 1 3.5365 -2.8030 -2.0528 13 6 2.0400 -0.7213 1.2493 14 1 1.6996 -1.7566 1.2664 15 6 3.5866 -0.6426 1.3445 16 6 3.8461 -0.7626 2.8610 17 7 2.6105 -0.3600 3.5485 18 6 2.4229 -0.3457 4.8830 19 8 1.3877 0.0908 5.3467 20 6 3.4766 -0.8612 5.7831 21 6 4.7987 -0.4497 5.6168 22 6 5.7755 -0.9298 6.4642 23 6 5.4454 -1.8238 7.4652 24 6 4.1336 -2.2443 7.6326 25 6 3.1487 -1.7661 6.7980 26 6 1.7116 -2.1929 6.9531 27 6 1.6373 -3.4592 7.8081 28 8 2.4205 -3.2551 8.9896 29 6 3.8242 -3.2254 8.7335 30 6 1.6098 0.0259 2.5362 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 3.0800 -0.4577 -5.4299 36 1 4.0487 -1.4710 0.8075 37 1 3.9484 0.3121 0.9629 38 1 4.0922 -1.7937 3.1146 39 1 4.6635 -0.1021 3.1506 40 1 5.0560 0.2444 4.8304 41 1 6.8000 -0.6099 6.3428 42 1 6.2154 -2.1988 8.1230 43 1 1.1469 -1.3957 7.4365 44 1 1.2853 -2.3947 5.9704 45 1 0.6011 -3.6544 8.0845 46 1 2.0352 -4.3044 7.2463 47 1 4.3504 -2.9278 9.6406 48 1 4.1573 -4.2187 8.4327 49 1 1.6307 1.1036 2.3742 50 1 0.6143 -0.2929 2.8452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569816321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:08 Heat of formation + Delta-G solvation = -59.790833 kcal Electronic energy + Delta-G solvation = -30420.062047 eV Core-core repulsion = 26411.359931 eV Total energy + Delta-G solvation = -4008.702116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.91150 -40.68289 -39.15911 -38.34867 -36.95191 -34.36159 -34.03258 -33.08619 -32.08170 -31.16866 -30.66844 -28.90973 -26.60647 -26.38637 -25.20791 -24.81016 -23.36866 -22.78885 -21.34444 -21.16465 -20.53518 -19.56438 -18.50316 -17.80857 -17.48817 -17.17353 -16.92621 -16.67574 -16.47029 -16.23650 -15.72754 -15.25931 -15.16103 -14.88097 -14.82682 -14.73121 -14.50221 -14.20467 -14.02073 -13.96380 -13.87758 -13.52613 -13.50155 -13.30589 -13.01143 -12.85396 -12.80831 -12.63661 -12.43373 -12.35542 -11.97393 -11.92836 -11.75568 -11.72055 -11.65752 -11.42922 -11.12213 -10.95810 -10.69411 -9.90985 -9.70053 -9.67956 -9.29561 -7.98196 -5.31199 -0.09197 0.25064 1.39664 1.43884 1.50977 1.53266 1.85170 2.51925 2.62322 2.87530 3.22093 3.34025 3.47228 3.58938 3.60385 3.61865 3.76312 3.84828 3.98164 4.03868 4.16301 4.21773 4.29176 4.31920 4.37022 4.42243 4.45328 4.52719 4.53554 4.62932 4.65074 4.68503 4.75541 4.79064 4.84297 4.88538 4.92504 5.00021 5.03830 5.11559 5.12583 5.25874 5.30502 5.33868 5.38171 5.43226 5.55535 5.81781 5.85799 6.07596 6.25396 6.36368 6.94749 7.12221 7.87754 8.07722 9.23547 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.002434 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.315457 B =11501.331856 C =11828.570209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.187 3.813 3 H 0.047 0.953 4 N -0.745 5.745 5 C -0.221 4.221 6 H 0.055 0.945 7 C -0.066 4.066 8 N -0.987 5.987 9 Si 0.953 3.047 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.243 1.243 13 C -0.096 4.096 14 H 0.087 0.913 15 C -0.118 4.118 16 C 0.103 3.897 17 N -0.610 5.610 18 C 0.572 3.428 19 O -0.573 6.573 20 C -0.143 4.143 21 C -0.092 4.092 22 C -0.121 4.121 23 C -0.085 4.085 24 C -0.135 4.135 25 C -0.048 4.048 26 C -0.112 4.112 27 C 0.063 3.937 28 O -0.393 6.393 29 C 0.098 3.902 30 C 0.119 3.881 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.366 0.634 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.140 0.860 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.113 0.887 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.086 0.914 49 H 0.071 0.929 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.479 -8.576 29.730 31.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 H 0.065 0.935 4 N -0.389 5.389 5 C -0.352 4.352 6 H 0.073 0.927 7 C -0.257 4.257 8 N -0.638 5.638 9 Si 0.781 3.219 10 H -0.212 1.212 11 H -0.227 1.227 12 H -0.167 1.167 13 C -0.116 4.116 14 H 0.105 0.895 15 C -0.156 4.156 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.362 3.638 19 O -0.454 6.454 20 C -0.146 4.146 21 C -0.110 4.110 22 C -0.138 4.138 23 C -0.103 4.103 24 C -0.135 4.135 25 C -0.049 4.049 26 C -0.150 4.150 27 C -0.014 4.014 28 O -0.312 6.312 29 C 0.022 3.978 30 C -0.003 4.003 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.199 0.801 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.158 0.842 41 H 0.179 0.821 42 H 0.181 0.819 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.131 0.869 46 H 0.087 0.913 47 H 0.145 0.855 48 H 0.103 0.897 49 H 0.089 0.911 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.842 -8.139 30.098 31.921 hybrid contribution -0.062 -0.428 -1.388 1.453 sum 6.781 -8.567 28.710 30.719 Atomic orbital electron populations 1.22349 0.97730 1.01381 1.00673 1.20245 0.92552 0.94998 0.84308 0.93494 1.42676 1.79861 1.09508 1.06820 1.18971 1.34514 0.94327 0.87357 0.92731 1.25475 1.02602 1.02463 0.95192 1.69890 1.54861 1.37730 1.01344 0.85435 0.77383 0.80734 0.78369 1.21182 1.22724 1.16739 1.22505 0.96243 1.00065 0.92757 0.89483 1.22596 0.95149 1.03811 0.94023 1.22347 0.86348 1.01356 0.91832 1.48535 1.16188 1.64962 1.04492 1.18329 0.86641 0.77867 0.80987 1.90760 1.30155 1.48573 1.75894 1.19748 0.94145 1.02152 0.98510 1.21557 0.90794 0.98978 0.99699 1.21420 1.00520 0.97223 0.94652 1.21567 0.95295 0.95642 0.97779 1.20479 0.94007 1.00636 0.98373 1.19570 0.95977 0.95691 0.93643 1.21078 0.92953 0.99718 1.01221 1.22731 0.97473 0.95058 0.86125 1.88051 1.17789 1.93569 1.31748 1.21697 0.81914 0.97097 0.97075 1.22204 0.92365 0.99441 0.86319 0.92951 0.91426 0.94791 0.80107 0.93545 0.89661 0.90679 0.90124 0.89237 0.84216 0.82126 0.81931 0.90816 0.91020 0.86933 0.91281 0.85510 0.89659 0.91103 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 9.31 71.98 0.67 -4.61 16 2 C 0.19 6.45 2.40 44.99 0.11 6.56 16 3 H 0.05 1.73 8.07 -2.39 -0.02 1.72 16 4 N -0.75 -32.08 4.70 -322.94 -1.52 -33.60 16 5 C -0.22 -12.01 10.41 84.03 0.88 -11.14 16 6 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 7 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 8 N -0.99 -62.38 13.97 21.65 0.30 -62.08 16 9 Si 0.95 43.82 27.74 68.60 1.90 45.73 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 12 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 13 C -0.10 -2.57 2.64 -9.40 -0.02 -2.59 16 14 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.12 -2.83 6.21 31.78 0.20 -2.63 16 16 C 0.10 2.02 5.67 86.73 0.49 2.51 16 17 N -0.61 -14.96 3.33 -815.08 -2.71 -17.67 16 18 C 0.57 15.78 6.51 86.79 0.56 16.34 16 19 O -0.57 -19.84 15.94 -3.86 -0.06 -19.90 16 20 C -0.14 -3.22 5.40 -20.04 -0.11 -3.33 16 21 C -0.09 -1.54 8.52 22.49 0.19 -1.35 16 22 C -0.12 -1.42 10.03 22.19 0.22 -1.19 16 23 C -0.08 -0.94 9.66 22.39 0.22 -0.73 16 24 C -0.13 -2.12 5.80 -19.88 -0.12 -2.24 16 25 C -0.05 -1.03 5.81 -19.60 -0.11 -1.14 16 26 C -0.11 -2.46 4.66 29.84 0.14 -2.32 16 27 C 0.06 1.02 6.85 71.97 0.49 1.52 16 28 O -0.39 -7.07 10.80 -148.98 -1.61 -8.68 16 29 C 0.10 1.20 6.66 71.23 0.47 1.68 16 30 C 0.12 3.09 5.40 86.84 0.47 3.56 16 31 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.07 1.85 7.33 -2.39 -0.02 1.83 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.37 15.00 5.66 -92.71 -0.52 14.48 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 1.96 8.03 -2.39 -0.02 1.94 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.42 6.03 -2.38 -0.01 1.41 16 40 H 0.14 2.01 6.03 -2.91 -0.02 1.99 16 41 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 43 H 0.07 1.91 7.93 -2.39 -0.02 1.89 16 44 H 0.07 1.68 7.40 -2.39 -0.02 1.67 16 45 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.07 0.94 8.07 -2.39 -0.02 0.92 16 47 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 50 H 0.07 2.01 7.99 -2.39 -0.02 1.99 16 Total: -1.00 -74.45 392.86 1.88 -72.57 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.36 Total: 28.07 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.22 Total: -4.44 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -3.93 Total: -113.34 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.67 Total: -28.58 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.73 kcal Total: -74.45 1.88 -72.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569816321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.780 kcal (2) G-P(sol) polarization free energy of solvation -74.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds