Wall clock time and date at job start Sat Apr 11 2020 07:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46668 * 2 1 4 4 N 1.46496 * 109.47396 * 120.00096 * 2 1 3 5 5 C 1.36937 * 119.99806 * 275.00379 * 4 2 1 6 6 H 1.07997 * 120.00409 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99604 * 180.27607 * 5 4 2 8 8 N 1.31611 * 120.00433 * 359.72387 * 7 5 4 9 9 Si 1.86806 * 119.99661 * 179.72093 * 7 5 4 10 10 H 1.48504 * 109.47000 * 59.99909 * 9 7 5 11 11 H 1.48502 * 109.46797 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47054 * 300.00049 * 9 7 5 13 13 C 1.52995 * 109.46794 * 240.00355 * 2 1 3 14 14 H 1.08993 * 109.51905 * 64.89630 * 13 2 1 15 15 C 1.53301 * 109.51009 * 184.99692 * 13 2 1 16 16 N 1.47148 * 108.38640 * 172.22368 * 15 13 2 17 17 C 1.34779 * 120.98489 * 129.48640 * 16 15 13 18 18 O 1.21554 * 119.99832 * 354.43281 * 17 16 15 19 19 C 1.47843 * 119.99952 * 174.43691 * 17 16 15 20 20 C 1.39491 * 120.04197 * 313.59373 * 19 17 16 21 21 C 1.37938 * 119.76280 * 179.79294 * 20 19 17 22 22 C 1.38260 * 120.10019 * 0.44951 * 21 20 19 23 23 C 1.38614 * 120.52440 * 359.79325 * 22 21 20 24 24 C 1.37977 * 119.93136 * 359.97438 * 23 22 21 25 25 C 1.51358 * 109.82747 * 179.97438 * 24 23 22 26 26 C 1.54349 * 105.15092 * 17.16661 * 25 24 23 27 27 C 1.51398 * 130.30364 * 179.97438 * 23 22 21 28 28 C 1.47151 * 118.03555 * 309.46591 * 16 15 13 29 29 C 1.53295 * 108.38575 * 50.53548 * 28 16 15 30 30 O 1.42958 * 109.51522 * 304.73944 * 13 2 1 31 31 H 1.09005 * 109.47052 * 299.99576 * 1 2 3 32 32 H 1.08991 * 109.47421 * 60.00071 * 1 2 3 33 33 H 1.09007 * 109.46877 * 180.02562 * 1 2 3 34 34 H 0.96995 * 120.00273 * 95.00128 * 4 2 1 35 35 H 0.96997 * 120.00788 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.68235 * 291.94998 * 15 13 2 37 37 H 1.09003 * 109.68030 * 52.50322 * 15 13 2 38 38 H 1.07992 * 120.11619 * 0.02562 * 20 19 17 39 39 H 1.08002 * 119.94883 * 180.24621 * 21 20 19 40 40 H 1.07999 * 119.73717 * 179.77199 * 22 21 20 41 41 H 1.08993 * 110.30288 * 136.08545 * 25 24 23 42 42 H 1.08998 * 110.30550 * 258.15296 * 25 24 23 43 43 H 1.09004 * 110.82720 * 91.90992 * 26 25 24 44 44 H 1.08997 * 110.82953 * 215.48011 * 26 25 24 45 45 H 1.08997 * 110.30342 * 43.92637 * 27 23 22 46 46 H 1.09000 * 110.39003 * 281.80767 * 27 23 22 47 47 H 1.09004 * 109.68257 * 170.25372 * 28 16 15 48 48 H 1.09000 * 109.68557 * 290.77118 * 28 16 15 49 49 H 1.08997 * 109.51536 * 67.62368 * 29 28 16 50 50 H 1.09003 * 109.51490 * 187.77307 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6174 -0.6605 3.5076 8 7 2.9305 -1.9374 3.4486 9 14 2.8031 0.2733 5.1149 10 1 1.4825 0.8103 5.5308 11 1 3.3167 -0.6440 6.1637 12 1 3.7572 1.3958 4.9278 13 6 2.0400 -0.7212 -1.2493 14 1 1.7504 -0.1598 -2.1375 15 6 3.5678 -0.8316 -1.1889 16 7 4.0155 -1.6874 -2.2991 17 6 4.9966 -1.2868 -3.1319 18 8 5.4556 -0.1654 -3.0353 19 6 5.5143 -2.2113 -4.1629 20 6 5.8269 -3.5284 -3.8263 21 6 6.3056 -4.3872 -4.7938 22 6 6.4836 -3.9412 -6.0903 23 6 6.1804 -2.6326 -6.4325 24 6 5.6963 -1.7651 -5.4750 25 6 5.4450 -0.4065 -6.0931 26 6 5.4125 -0.6560 -7.6159 27 6 6.2881 -1.9182 -7.7630 28 6 3.3607 -2.9937 -2.4730 29 6 1.8430 -2.7779 -2.4708 30 8 1.4752 -2.0332 -1.3073 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.2492 -1.6317 1.1526 35 1 3.2573 -2.3939 4.2396 36 1 4.0116 0.1590 -1.2869 37 1 3.8665 -1.2760 -0.2394 38 1 5.6911 -3.8755 -2.8128 39 1 6.5448 -5.4087 -4.5374 40 1 6.8622 -4.6176 -6.8423 41 1 4.4887 -0.0080 -5.7545 42 1 6.2521 0.2802 -5.8380 43 1 4.3948 -0.8493 -7.9553 44 1 5.8492 0.1842 -8.1557 45 1 5.9075 -2.5516 -8.5643 46 1 7.3229 -1.6390 -7.9614 47 1 3.6674 -3.4347 -3.4215 48 1 3.6391 -3.6559 -1.6532 49 1 1.5526 -2.2247 -3.3640 50 1 1.3379 -3.7438 -2.4597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571009235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:19 Heat of formation + Delta-G solvation = -35.559153 kcal Electronic energy + Delta-G solvation = -30989.904956 eV Core-core repulsion = 26982.253604 eV Total energy + Delta-G solvation = -4007.651351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92002 -39.65243 -38.11305 -36.05363 -35.39734 -34.42715 -32.34459 -31.84103 -30.14219 -29.29959 -28.36428 -28.10158 -27.18546 -24.42060 -23.72019 -23.47347 -22.18292 -21.30534 -21.16518 -19.65971 -19.13408 -17.40803 -17.08383 -16.61636 -16.14482 -16.09625 -15.75236 -15.36800 -15.28621 -14.67844 -14.52499 -14.43950 -14.15324 -13.65147 -13.40361 -13.34742 -13.18715 -13.09601 -12.99730 -12.69704 -12.35029 -12.07500 -11.88820 -11.81827 -11.54508 -11.51453 -11.41700 -11.31184 -11.16974 -11.12134 -10.80733 -10.76096 -10.43278 -10.29074 -10.03642 -9.85372 -9.67560 -9.55028 -9.01977 -8.89648 -8.77817 -8.32458 -6.90973 -5.72139 -3.00487 0.78845 1.08328 2.71871 2.96541 3.47247 3.50556 3.51774 3.52365 4.01257 4.08121 4.26390 4.42498 4.62530 4.71184 4.73610 4.79338 4.86900 4.91045 5.06422 5.12251 5.21219 5.22649 5.35450 5.40717 5.43596 5.47623 5.52280 5.55558 5.61517 5.63457 5.72798 5.76505 5.82699 5.83094 5.89681 5.94259 6.03016 6.09678 6.16012 6.24757 6.29002 6.41063 6.43932 6.59138 6.65368 6.70093 6.81626 7.17145 7.43151 7.50233 7.73847 8.18296 8.46117 9.58272 10.14900 10.52005 11.50134 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.002697 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.447240 B =10379.129346 C =10626.124368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.078 3.922 14 H 0.054 0.946 15 C 0.086 3.914 16 N -0.606 5.606 17 C 0.558 3.442 18 O -0.533 6.533 19 C -0.111 4.111 20 C -0.089 4.089 21 C -0.125 4.125 22 C -0.090 4.090 23 C -0.106 4.106 24 C -0.046 4.046 25 C -0.083 4.083 26 C -0.121 4.121 27 C -0.080 4.080 28 C 0.067 3.933 29 C 0.049 3.951 30 O -0.359 6.359 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.389 0.611 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.048 0.952 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 -5.071 -24.785 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.036 4.036 16 N -0.339 5.339 17 C 0.346 3.654 18 O -0.411 6.411 19 C -0.115 4.115 20 C -0.107 4.107 21 C -0.143 4.143 22 C -0.108 4.108 23 C -0.106 4.106 24 C -0.047 4.047 25 C -0.120 4.120 26 C -0.158 4.158 27 C -0.117 4.117 28 C -0.056 4.056 29 C -0.030 4.030 30 O -0.277 6.277 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.100 0.900 49 H 0.066 0.934 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.340 -4.414 -24.419 25.191 hybrid contribution 0.362 0.006 0.878 0.950 sum 4.702 -4.407 -23.541 24.407 Atomic orbital electron populations 1.22326 0.98461 1.01602 0.99547 1.20258 0.92833 0.94610 0.85110 0.92248 1.42398 1.77699 1.10950 1.04954 1.19195 1.36472 0.93840 0.87487 0.91257 1.24712 1.02181 0.95938 0.97958 1.69651 1.50697 1.08638 1.28951 0.86302 0.77742 0.78634 0.83704 1.21350 1.21796 1.21310 1.22906 0.91584 0.84111 0.99485 0.92788 1.22482 0.95061 0.96697 0.89349 1.48153 1.36283 1.19076 1.30374 1.18386 0.79477 0.86757 0.80745 1.90773 1.58814 1.20160 1.71319 1.19501 1.04352 0.94368 0.93231 1.21307 0.97582 0.91716 1.00124 1.20987 1.00581 1.00003 0.92734 1.20780 0.98935 0.94535 0.96522 1.20574 0.99981 0.93780 0.96271 1.20518 0.96173 0.96302 0.91682 1.21082 1.03202 0.93710 0.94015 1.22325 1.00317 0.97517 0.95685 1.21047 1.00865 0.95897 0.93893 1.22660 0.94318 0.85375 1.03264 1.22883 0.93278 0.97437 0.89353 1.88103 1.70905 1.27138 1.41567 0.92819 0.94896 0.92468 0.77611 0.93553 0.88504 0.88188 0.84934 0.85132 0.85896 0.90598 0.89298 0.90889 0.90316 0.90600 0.90082 0.88943 0.89996 0.93376 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.30 37.16 0.35 -2.64 16 2 C 0.18 3.67 2.80 -67.93 -0.19 3.48 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -17.78 4.24 -53.43 -0.23 -18.00 16 5 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 9 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.08 1.37 2.57 -26.58 -0.07 1.30 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.09 1.55 5.84 -3.53 -0.02 1.53 16 16 N -0.61 -9.39 3.02 -173.39 -0.52 -9.92 16 17 C 0.56 9.01 7.11 -12.33 -0.09 8.92 16 18 O -0.53 -10.32 16.02 5.32 0.09 -10.24 16 19 C -0.11 -1.47 4.90 -104.93 -0.51 -1.98 16 20 C -0.09 -0.97 7.56 -39.22 -0.30 -1.27 16 21 C -0.13 -1.11 10.03 -39.68 -0.40 -1.50 16 22 C -0.09 -0.77 10.03 -39.43 -0.40 -1.16 16 23 C -0.11 -1.03 6.13 -104.24 -0.64 -1.67 16 24 C -0.05 -0.55 6.00 -103.82 -0.62 -1.17 16 25 C -0.08 -0.89 6.05 -26.85 -0.16 -1.05 16 26 C -0.12 -0.91 7.08 -25.33 -0.18 -1.09 16 27 C -0.08 -0.58 6.77 -26.85 -0.18 -0.76 16 28 C 0.07 0.84 5.27 -3.53 -0.02 0.82 16 29 C 0.05 0.62 6.99 37.31 0.26 0.88 16 30 O -0.36 -6.14 9.24 -35.23 -0.33 -6.46 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.12 7.57 -51.92 -0.39 0.73 16 34 H 0.39 10.37 7.08 -40.82 -0.29 10.08 16 35 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.10 1.85 7.06 -51.93 -0.37 1.49 16 37 H 0.10 2.11 6.94 -51.93 -0.36 1.75 16 38 H 0.13 1.37 7.16 -52.49 -0.38 1.00 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.96 5.28 -51.93 -0.27 0.68 16 48 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -32.82 395.42 -10.69 -43.51 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -7.94 Total: 9.46 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -3.41 Total: -4.53 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.03 Total: -55.21 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.24 Total: -16.70 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.82 -10.69 -43.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571009235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.950 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds