Wall clock time and date at job start Sat Apr 11 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46668 * 2 1 4 4 N 1.46496 * 109.47396 * 120.00096 * 2 1 3 5 5 C 1.36937 * 119.99806 * 275.00379 * 4 2 1 6 6 H 1.07997 * 120.00409 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99604 * 180.27607 * 5 4 2 8 8 N 1.31611 * 120.00433 * 359.72387 * 7 5 4 9 9 Si 1.86806 * 119.99661 * 179.72093 * 7 5 4 10 10 H 1.48504 * 109.47000 * 59.99909 * 9 7 5 11 11 H 1.48502 * 109.46797 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47054 * 300.00049 * 9 7 5 13 13 C 1.52995 * 109.46794 * 240.00355 * 2 1 3 14 14 H 1.08993 * 109.51905 * 64.89630 * 13 2 1 15 15 C 1.53301 * 109.51009 * 184.99692 * 13 2 1 16 16 N 1.47148 * 108.38640 * 172.22368 * 15 13 2 17 17 C 1.34779 * 120.98489 * 129.48640 * 16 15 13 18 18 O 1.21554 * 119.99832 * 354.43281 * 17 16 15 19 19 C 1.47843 * 119.99952 * 174.43691 * 17 16 15 20 20 C 1.39491 * 120.04197 * 313.59373 * 19 17 16 21 21 C 1.37938 * 119.76280 * 179.79294 * 20 19 17 22 22 C 1.38260 * 120.10019 * 0.44951 * 21 20 19 23 23 C 1.38614 * 120.52440 * 359.79325 * 22 21 20 24 24 C 1.37977 * 119.93136 * 359.97438 * 23 22 21 25 25 C 1.51358 * 109.82747 * 179.97438 * 24 23 22 26 26 C 1.54349 * 105.15092 * 17.16661 * 25 24 23 27 27 C 1.51398 * 130.30364 * 179.97438 * 23 22 21 28 28 C 1.47151 * 118.03555 * 309.46591 * 16 15 13 29 29 C 1.53295 * 108.38575 * 50.53548 * 28 16 15 30 30 O 1.42958 * 109.51522 * 304.73944 * 13 2 1 31 31 H 1.09005 * 109.47052 * 299.99576 * 1 2 3 32 32 H 1.08991 * 109.47421 * 60.00071 * 1 2 3 33 33 H 1.09007 * 109.46877 * 180.02562 * 1 2 3 34 34 H 0.96995 * 120.00273 * 95.00128 * 4 2 1 35 35 H 0.96997 * 120.00788 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.68235 * 291.94998 * 15 13 2 37 37 H 1.09003 * 109.68030 * 52.50322 * 15 13 2 38 38 H 1.07992 * 120.11619 * 0.02562 * 20 19 17 39 39 H 1.08002 * 119.94883 * 180.24621 * 21 20 19 40 40 H 1.07999 * 119.73717 * 179.77199 * 22 21 20 41 41 H 1.08993 * 110.30288 * 136.08545 * 25 24 23 42 42 H 1.08998 * 110.30550 * 258.15296 * 25 24 23 43 43 H 1.09004 * 110.82720 * 91.90992 * 26 25 24 44 44 H 1.08997 * 110.82953 * 215.48011 * 26 25 24 45 45 H 1.08997 * 110.30342 * 43.92637 * 27 23 22 46 46 H 1.09000 * 110.39003 * 281.80767 * 27 23 22 47 47 H 1.09004 * 109.68257 * 170.25372 * 28 16 15 48 48 H 1.09000 * 109.68557 * 290.77118 * 28 16 15 49 49 H 1.08997 * 109.51536 * 67.62368 * 29 28 16 50 50 H 1.09003 * 109.51490 * 187.77307 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6174 -0.6605 3.5076 8 7 2.9305 -1.9374 3.4486 9 14 2.8031 0.2733 5.1149 10 1 1.4825 0.8103 5.5308 11 1 3.3167 -0.6440 6.1637 12 1 3.7572 1.3958 4.9278 13 6 2.0400 -0.7212 -1.2493 14 1 1.7504 -0.1598 -2.1375 15 6 3.5678 -0.8316 -1.1889 16 7 4.0155 -1.6874 -2.2991 17 6 4.9966 -1.2868 -3.1319 18 8 5.4556 -0.1654 -3.0353 19 6 5.5143 -2.2113 -4.1629 20 6 5.8269 -3.5284 -3.8263 21 6 6.3056 -4.3872 -4.7938 22 6 6.4836 -3.9412 -6.0903 23 6 6.1804 -2.6326 -6.4325 24 6 5.6963 -1.7651 -5.4750 25 6 5.4450 -0.4065 -6.0931 26 6 5.4125 -0.6560 -7.6159 27 6 6.2881 -1.9182 -7.7630 28 6 3.3607 -2.9937 -2.4730 29 6 1.8430 -2.7779 -2.4708 30 8 1.4752 -2.0332 -1.3073 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.2492 -1.6317 1.1526 35 1 3.2573 -2.3939 4.2396 36 1 4.0116 0.1590 -1.2869 37 1 3.8665 -1.2760 -0.2394 38 1 5.6911 -3.8755 -2.8128 39 1 6.5448 -5.4087 -4.5374 40 1 6.8622 -4.6176 -6.8423 41 1 4.4887 -0.0080 -5.7545 42 1 6.2521 0.2802 -5.8380 43 1 4.3948 -0.8493 -7.9553 44 1 5.8492 0.1842 -8.1557 45 1 5.9075 -2.5516 -8.5643 46 1 7.3229 -1.6390 -7.9614 47 1 3.6674 -3.4347 -3.4215 48 1 3.6391 -3.6559 -1.6532 49 1 1.5526 -2.2247 -3.3640 50 1 1.3379 -3.7438 -2.4597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571009235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:18 Heat of formation + Delta-G solvation = -55.030468 kcal Electronic energy + Delta-G solvation = -30990.749295 eV Core-core repulsion = 26982.253604 eV Total energy + Delta-G solvation = -4008.495691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.95077 -40.70964 -39.39896 -37.20138 -36.68965 -35.72757 -34.19262 -32.81336 -31.58798 -30.17482 -29.99326 -29.17002 -28.12613 -25.98611 -25.18873 -24.76409 -23.25079 -22.12230 -21.98725 -21.20651 -20.25334 -19.34070 -18.27502 -17.81456 -17.29980 -17.05270 -16.82343 -16.59920 -16.19685 -16.13624 -15.98785 -15.54045 -15.45934 -15.10010 -14.86974 -14.54927 -14.28748 -14.14586 -13.98703 -13.76741 -13.64645 -13.47289 -13.13736 -12.97847 -12.76018 -12.70379 -12.56844 -12.50203 -12.36338 -12.24031 -12.20050 -12.08252 -11.85314 -11.75490 -11.70240 -11.52804 -11.14501 -10.95391 -10.90097 -9.89019 -9.62344 -9.52616 -8.96392 -7.90491 -5.17904 -0.06726 0.32386 1.47115 1.49774 1.55321 1.55680 1.76151 2.57339 2.68054 2.75876 3.26883 3.43205 3.47528 3.60648 3.65740 3.90163 3.92577 3.96121 4.01632 4.11659 4.12870 4.15593 4.24010 4.26179 4.29359 4.44168 4.46894 4.55714 4.59920 4.73202 4.75126 4.77083 4.82137 4.82807 4.88737 4.96839 4.99903 5.08089 5.09726 5.13628 5.19390 5.25898 5.29292 5.36624 5.42188 5.53100 5.55189 5.60224 5.92346 6.20780 6.23051 6.31171 6.92999 7.38056 8.12914 8.38867 9.32548 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.002697 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.447240 B =10379.129346 C =10626.124368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.058 0.942 4 N -0.726 5.726 5 C -0.237 4.237 6 H 0.075 0.925 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.281 1.281 13 C 0.094 3.906 14 H 0.073 0.927 15 C 0.096 3.904 16 N -0.605 5.605 17 C 0.554 3.446 18 O -0.578 6.578 19 C -0.136 4.136 20 C -0.097 4.097 21 C -0.118 4.118 22 C -0.082 4.082 23 C -0.106 4.106 24 C -0.070 4.070 25 C -0.087 4.087 26 C -0.113 4.113 27 C -0.077 4.077 28 C 0.069 3.931 29 C 0.044 3.956 30 O -0.380 6.380 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.377 0.623 35 H 0.249 0.751 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.132 0.868 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.119 0.881 48 H 0.078 0.922 49 H 0.062 0.938 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 -6.427 -27.795 28.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.065 3.935 3 H 0.076 0.924 4 N -0.367 5.367 5 C -0.369 4.369 6 H 0.093 0.907 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.798 3.202 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.208 1.208 13 C 0.035 3.965 14 H 0.091 0.909 15 C -0.027 4.027 16 N -0.337 5.337 17 C 0.345 3.655 18 O -0.459 6.459 19 C -0.138 4.138 20 C -0.116 4.116 21 C -0.135 4.135 22 C -0.100 4.100 23 C -0.106 4.106 24 C -0.070 4.070 25 C -0.125 4.125 26 C -0.151 4.151 27 C -0.113 4.113 28 C -0.053 4.053 29 C -0.033 4.033 30 O -0.299 6.299 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.210 0.790 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.150 0.850 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.137 0.863 48 H 0.097 0.903 49 H 0.080 0.920 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.212 -5.763 -27.471 28.383 hybrid contribution 0.415 0.402 1.691 1.787 sum 4.627 -5.361 -25.780 26.735 Atomic orbital electron populations 1.22142 0.96797 1.01224 1.00478 1.20486 0.93851 0.94500 0.84676 0.92407 1.42497 1.78045 1.10447 1.05729 1.19576 1.34709 0.94146 0.88438 0.90745 1.25473 1.03122 0.96853 1.01192 1.69810 1.52508 1.10113 1.29325 0.85293 0.77864 0.77307 0.79785 1.20465 1.22342 1.20766 1.22588 0.90506 0.84844 0.98588 0.90879 1.22092 0.95861 0.95904 0.88884 1.48205 1.36370 1.19780 1.29384 1.19021 0.78793 0.86739 0.80989 1.90730 1.60200 1.22319 1.72661 1.19396 1.06713 0.94822 0.92918 1.21388 0.98231 0.91142 1.00833 1.21344 0.98979 1.00878 0.92328 1.21215 0.97225 0.94446 0.97086 1.20959 0.98897 0.94042 0.96742 1.20755 0.97208 0.97275 0.91809 1.21113 1.01491 0.93222 0.96631 1.22336 1.01211 0.98542 0.92980 1.21119 1.01473 0.95570 0.93172 1.22836 0.94149 0.83821 1.04522 1.23196 0.93395 0.98397 0.88295 1.88063 1.71022 1.26920 1.43873 0.94232 0.91532 0.93425 0.79007 0.94226 0.90370 0.91801 0.85042 0.82157 0.82480 0.92521 0.91003 0.90103 0.88817 0.88192 0.89039 0.86286 0.90339 0.91983 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 9.30 71.98 0.67 -4.74 16 2 C 0.17 7.09 2.80 44.99 0.13 7.22 16 3 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 4 N -0.73 -37.13 4.24 -322.95 -1.37 -38.50 16 5 C -0.24 -13.31 9.93 84.03 0.83 -12.48 16 6 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 7 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 8 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 9 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.09 3.31 2.57 30.69 0.08 3.39 16 14 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 15 C 0.10 3.66 5.84 86.36 0.50 4.17 16 16 N -0.61 -19.46 3.02 -820.76 -2.48 -21.94 16 17 C 0.55 18.76 7.11 86.79 0.62 19.38 16 18 O -0.58 -24.02 16.02 -3.88 -0.06 -24.08 16 19 C -0.14 -3.58 4.90 -20.06 -0.10 -3.67 16 20 C -0.10 -2.01 7.56 22.50 0.17 -1.84 16 21 C -0.12 -1.70 10.03 22.20 0.22 -1.48 16 22 C -0.08 -1.08 10.03 22.36 0.22 -0.86 16 23 C -0.11 -1.78 6.13 -19.61 -0.12 -1.90 16 24 C -0.07 -1.62 6.00 -19.35 -0.12 -1.74 16 25 C -0.09 -1.91 6.05 30.51 0.18 -1.72 16 26 C -0.11 -1.48 7.08 31.50 0.22 -1.26 16 27 C -0.08 -0.86 6.77 30.52 0.21 -0.65 16 28 C 0.07 1.68 5.27 86.35 0.46 2.13 16 29 C 0.04 1.06 6.99 72.08 0.50 1.56 16 30 O -0.38 -12.84 9.24 -148.98 -1.38 -14.22 16 31 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.84 7.57 -2.38 -0.02 1.82 16 34 H 0.38 20.96 7.08 -92.71 -0.66 20.30 16 35 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.08 3.24 7.06 -2.39 -0.02 3.22 16 37 H 0.06 2.91 6.94 -2.39 -0.02 2.89 16 38 H 0.13 2.65 7.16 -2.91 -0.02 2.63 16 39 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.12 2.29 5.28 -2.39 -0.01 2.28 16 48 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -74.92 395.42 2.46 -72.46 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.29 Total: 35.07 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 5.15 Total: 1.66 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -3.57 Total: -120.17 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.44 Total: -38.31 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -74.92 2.46 -72.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571009235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.432 kcal (2) G-P(sol) polarization free energy of solvation -74.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds