Wall clock time and date at job start Sat Apr 11 2020 07:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47096 * 2 1 4 4 N 1.46503 * 109.47137 * 240.00071 * 2 1 3 5 5 C 1.34775 * 119.99968 * 84.99681 * 4 2 1 6 6 O 1.21283 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00146 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.47051 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47108 * 179.97438 * 8 7 5 10 10 C 1.38226 * 120.00300 * 269.72671 * 9 8 7 11 11 C 1.38239 * 120.00258 * 179.76453 * 10 9 8 12 12 C 1.38240 * 119.99657 * 0.50835 * 11 10 9 13 13 C 1.38234 * 119.99998 * 359.74262 * 12 11 10 14 14 C 1.38235 * 119.99938 * 0.02562 * 13 12 11 15 15 C 1.50700 * 109.47090 * 120.00258 * 2 1 3 16 16 O 1.21276 * 119.99954 * 120.00208 * 15 2 1 17 17 N 1.34775 * 119.99901 * 299.99893 * 15 2 1 18 18 C 1.46505 * 119.99989 * 180.02562 * 17 15 2 19 19 C 1.53002 * 109.47002 * 184.66830 * 18 17 15 20 20 C 1.50696 * 115.55193 * 297.93943 * 19 18 17 21 21 H 1.08001 * 120.00063 * 95.21366 * 20 19 18 22 22 C 1.37879 * 119.99802 * 275.21021 * 20 19 18 23 23 N 1.31514 * 119.99885 * 7.13436 * 22 20 19 24 24 Si 1.86800 * 119.99770 * 187.13201 * 22 20 19 25 25 H 1.48503 * 109.46796 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47212 * 300.00012 * 24 22 20 27 27 H 1.48498 * 109.47212 * 60.00416 * 24 22 20 28 28 C 1.53008 * 117.49664 * 83.60874 * 19 18 17 29 29 C 1.53000 * 117.49581 * 152.26424 * 19 18 17 30 30 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46974 * 299.99758 * 1 2 3 32 32 H 1.08996 * 109.47024 * 60.00188 * 1 2 3 33 33 H 0.97001 * 119.99835 * 264.99955 * 4 2 1 34 34 H 1.09001 * 109.46730 * 299.99908 * 7 5 4 35 35 H 1.08992 * 109.46894 * 60.00010 * 7 5 4 36 36 H 1.08997 * 109.47691 * 299.99851 * 8 7 5 37 37 H 1.09004 * 109.47775 * 60.00264 * 8 7 5 38 38 H 1.08006 * 120.00019 * 359.97438 * 10 9 8 39 39 H 1.07994 * 120.00191 * 180.23681 * 11 10 9 40 40 H 1.07995 * 119.99650 * 179.72731 * 12 11 10 41 41 H 1.07999 * 120.00388 * 179.97438 * 13 12 11 42 42 H 1.08003 * 120.00079 * 179.97438 * 14 13 12 43 43 H 0.97003 * 119.99966 * 359.97438 * 17 15 2 44 44 H 1.08996 * 109.47106 * 64.66760 * 18 17 15 45 45 H 1.08998 * 109.46754 * 304.66975 * 18 17 15 46 46 H 0.96995 * 119.99933 * 355.39984 * 23 22 20 47 47 H 1.08998 * 117.49575 * 215.00498 * 28 19 18 48 48 H 1.09003 * 117.49971 * 0.02562 * 28 19 18 49 49 H 1.09005 * 117.50031 * 359.97438 * 29 19 18 50 50 H 1.09005 * 117.49813 * 144.97487 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8590 1.1586 -2.4115 7 6 2.6488 -0.7287 -3.5878 8 6 2.7009 0.2546 -4.7587 9 6 3.2033 -0.4558 -5.9893 10 6 4.5576 -0.4881 -6.2642 11 6 5.0188 -1.1439 -7.3904 12 6 4.1248 -1.7583 -8.2471 13 6 2.7700 -1.7216 -7.9749 14 6 2.3092 -1.0699 -6.8462 15 6 2.0324 -0.7105 1.2304 16 8 2.7296 -1.6965 1.1191 17 7 1.7068 -0.2500 2.4545 18 6 2.1956 -0.9404 3.6507 19 6 1.5919 -0.2902 4.8972 20 6 1.9522 1.1568 5.1148 21 1 1.2902 1.9363 4.7677 22 6 3.1271 1.4855 5.7572 23 7 3.9987 0.5468 6.0548 24 14 3.4807 3.2643 6.2048 25 1 4.7992 3.3515 6.8824 26 1 3.5033 4.0901 4.9708 27 1 2.4210 3.7654 7.1165 28 6 0.1930 -0.7415 5.3223 29 6 1.4162 -1.1688 6.1374 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1526 34 1 3.6480 -1.1212 -3.3986 35 1 1.9760 -1.5505 -3.8326 36 1 1.7020 0.6475 -4.9480 37 1 3.3741 1.0761 -4.5137 38 1 5.2557 -0.0039 -5.5974 39 1 6.0772 -1.1724 -7.6031 40 1 4.4847 -2.2668 -9.1293 41 1 2.0714 -2.2012 -8.6445 42 1 1.2507 -1.0408 -6.6338 43 1 1.1494 0.5389 2.5435 44 1 3.2823 -0.8681 3.6933 45 1 1.9025 -1.9894 3.6099 46 1 3.7867 -0.3840 5.8831 47 1 -0.4665 0.0082 5.7593 48 1 -0.2969 -1.5020 4.7141 49 1 1.7303 -2.2101 6.0652 50 1 1.5617 -0.7003 7.1109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337767237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:01 Heat of formation + Delta-G solvation = -48.327679 kcal Electronic energy + Delta-G solvation = -28813.184107 eV Core-core repulsion = 24804.979071 eV Total energy + Delta-G solvation = -4008.205036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35046 -39.59155 -38.91661 -37.10610 -35.01739 -34.23355 -33.66917 -31.98745 -31.19181 -31.16445 -29.54847 -26.56576 -25.34146 -24.92870 -23.54123 -22.87669 -21.47579 -21.27417 -20.34307 -19.94195 -19.63971 -17.88486 -17.19798 -16.77166 -16.37237 -16.02097 -15.88429 -15.37341 -15.17874 -14.98185 -14.73333 -14.21977 -13.90076 -13.79533 -13.73827 -13.42920 -13.39525 -13.12661 -12.97847 -12.92729 -12.60290 -12.37919 -12.30487 -12.13076 -11.83267 -11.61353 -11.51247 -11.30048 -11.10571 -11.01656 -10.85755 -10.56377 -10.18024 -10.00369 -9.84078 -9.57702 -9.23036 -9.17316 -9.00009 -8.79065 -8.55789 -8.48161 -8.32794 -6.45627 -4.22465 1.03134 1.09235 2.52936 2.90534 2.93168 3.38065 3.38551 3.48128 3.57416 3.70689 4.38851 4.42631 4.53379 4.69139 4.71613 4.82043 4.83281 4.86392 4.98075 5.06934 5.09486 5.18546 5.22300 5.22779 5.24522 5.33272 5.56619 5.57514 5.67385 5.73152 5.76308 5.77703 5.90626 6.05415 6.05960 6.15381 6.16009 6.20893 6.27169 6.31275 6.34840 6.45975 6.56141 6.70088 6.77991 6.98416 7.09983 7.16323 7.43281 7.99516 8.09424 8.15173 8.27386 8.57335 8.75079 9.53972 10.93560 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.001824 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.821334 B =15346.369837 C =15868.559367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.114 0.886 4 N -0.711 5.711 5 C 0.515 3.485 6 O -0.543 6.543 7 C -0.133 4.133 8 C -0.065 4.065 9 C -0.081 4.081 10 C -0.116 4.116 11 C -0.119 4.119 12 C -0.127 4.127 13 C -0.120 4.120 14 C -0.117 4.117 15 C 0.502 3.498 16 O -0.556 6.556 17 N -0.691 5.691 18 C 0.158 3.842 19 C 0.003 3.997 20 C -0.578 4.578 21 H 0.054 0.946 22 C 0.030 3.970 23 N -0.898 5.898 24 Si 1.066 2.934 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.287 1.287 28 C -0.193 4.193 29 C -0.171 4.171 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.405 0.595 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.275 0.725 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 -4.533 -23.684 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 H 0.131 0.869 4 N -0.364 5.364 5 C 0.302 3.698 6 O -0.420 6.420 7 C -0.173 4.173 8 C -0.103 4.103 9 C -0.081 4.081 10 C -0.134 4.134 11 C -0.137 4.137 12 C -0.145 4.145 13 C -0.138 4.138 14 C -0.135 4.135 15 C 0.286 3.714 16 O -0.435 6.435 17 N -0.340 5.340 18 C 0.035 3.965 19 C 0.002 3.998 20 C -0.616 4.616 21 H 0.072 0.928 22 C -0.177 4.177 23 N -0.532 5.532 24 Si 0.894 3.106 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.214 1.214 28 C -0.230 4.230 29 C -0.210 4.210 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.246 0.754 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.240 0.760 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.714 -3.398 -23.085 23.491 hybrid contribution -1.270 -1.214 -0.465 1.817 sum -3.984 -4.612 -23.549 24.325 Atomic orbital electron populations 1.22108 0.92986 1.02889 1.03571 1.20779 0.95563 0.98278 0.83889 0.86864 1.45793 1.67177 1.14882 1.08571 1.20674 0.77340 0.87317 0.84475 1.90710 1.50189 1.15929 1.85149 1.21631 1.03642 0.99631 0.92400 1.20344 1.03091 0.96812 0.90063 1.19941 0.93568 0.98169 0.96428 1.21131 0.95118 0.99583 0.97556 1.21172 0.99710 0.97885 0.94902 1.21159 0.93533 1.00087 0.99679 1.21154 0.95730 0.99453 0.97426 1.21099 0.99584 0.98055 0.94736 1.20438 0.80902 0.84990 0.85034 1.90648 1.38999 1.27115 1.86771 1.45833 1.51747 1.31476 1.04952 1.21072 0.98996 0.93021 0.83405 1.19335 0.94017 0.95706 0.90710 1.21174 1.09117 0.88628 1.42669 0.92780 1.25786 0.92294 1.06068 0.93578 1.70745 1.34575 1.02400 1.45446 0.83581 0.76309 0.74099 0.76626 1.20778 1.21386 1.21392 1.22905 0.92046 1.02772 1.05298 1.22753 1.02525 0.98197 0.97479 0.91960 0.90661 0.91062 0.75383 0.88531 0.88669 0.90060 0.90000 0.85917 0.86093 0.86255 0.86149 0.86017 0.75975 0.91708 0.93931 0.91316 0.89969 0.91393 0.91278 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.38 37.16 0.35 -1.49 16 2 C 0.12 1.73 2.98 -69.08 -0.21 1.52 16 3 H 0.11 1.68 7.58 -51.93 -0.39 1.29 16 4 N -0.71 -8.92 4.95 -54.93 -0.27 -9.19 16 5 C 0.52 6.31 7.79 -10.99 -0.09 6.22 16 6 O -0.54 -8.37 15.64 5.55 0.09 -8.28 16 7 C -0.13 -1.16 5.68 -27.89 -0.16 -1.32 16 8 C -0.07 -0.58 4.63 -27.88 -0.13 -0.71 16 9 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 10 C -0.12 -0.96 9.70 -39.59 -0.38 -1.35 16 11 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 12 C -0.13 -0.92 10.05 -39.58 -0.40 -1.31 16 13 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 14 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 15 C 0.50 8.73 7.22 -10.99 -0.08 8.65 16 16 O -0.56 -11.17 15.83 5.56 0.09 -11.09 16 17 N -0.69 -12.75 5.35 -60.29 -0.32 -13.07 16 18 C 0.16 3.40 5.43 -4.04 -0.02 3.38 16 19 C 0.00 0.07 0.99 -155.66 -0.15 -0.08 16 20 C -0.58 -14.63 8.44 -34.44 -0.29 -14.92 16 21 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 22 C 0.03 0.79 5.39 -17.82 -0.10 0.69 16 23 N -0.90 -25.46 13.57 55.43 0.75 -24.71 16 24 Si 1.07 23.91 29.91 -169.99 -5.08 18.82 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 28 C -0.19 -3.83 9.96 -26.69 -0.27 -4.10 16 29 C -0.17 -3.70 8.74 -26.69 -0.23 -3.94 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.41 4.81 7.79 -40.82 -0.32 4.50 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.75 8.04 -51.93 -0.42 0.34 16 37 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.41 6.99 7.64 -40.82 -0.31 6.67 16 44 H 0.06 1.60 7.82 -51.93 -0.41 1.19 16 45 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 46 H 0.28 7.75 6.19 -40.82 -0.25 7.50 16 47 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 50 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 419.91 15.07 6.33 6.33 Total: -1.00 -31.30 419.91 -10.33 -41.63 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -8.03 Total: 13.42 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -3.87 Total: -13.86 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.16 Total: -46.98 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.17 Total: -19.36 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.08 Total: 18.82 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.30 -10.33 -41.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337767237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.701 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds