Wall clock time and date at job start Sat Apr 11 2020 07:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47096 * 2 1 4 4 N 1.46503 * 109.47137 * 240.00071 * 2 1 3 5 5 C 1.34775 * 119.99968 * 84.99681 * 4 2 1 6 6 O 1.21283 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00146 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.47051 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47108 * 179.97438 * 8 7 5 10 10 C 1.38226 * 120.00300 * 269.72671 * 9 8 7 11 11 C 1.38239 * 120.00258 * 179.76453 * 10 9 8 12 12 C 1.38240 * 119.99657 * 0.50835 * 11 10 9 13 13 C 1.38234 * 119.99998 * 359.74262 * 12 11 10 14 14 C 1.38235 * 119.99938 * 0.02562 * 13 12 11 15 15 C 1.50700 * 109.47090 * 120.00258 * 2 1 3 16 16 O 1.21276 * 119.99954 * 120.00208 * 15 2 1 17 17 N 1.34775 * 119.99901 * 299.99893 * 15 2 1 18 18 C 1.46505 * 119.99989 * 180.02562 * 17 15 2 19 19 C 1.53002 * 109.47002 * 184.66830 * 18 17 15 20 20 C 1.50696 * 115.55193 * 297.93943 * 19 18 17 21 21 H 1.08001 * 120.00063 * 95.21366 * 20 19 18 22 22 C 1.37879 * 119.99802 * 275.21021 * 20 19 18 23 23 N 1.31514 * 119.99885 * 7.13436 * 22 20 19 24 24 Si 1.86800 * 119.99770 * 187.13201 * 22 20 19 25 25 H 1.48503 * 109.46796 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47212 * 300.00012 * 24 22 20 27 27 H 1.48498 * 109.47212 * 60.00416 * 24 22 20 28 28 C 1.53008 * 117.49664 * 83.60874 * 19 18 17 29 29 C 1.53000 * 117.49581 * 152.26424 * 19 18 17 30 30 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46974 * 299.99758 * 1 2 3 32 32 H 1.08996 * 109.47024 * 60.00188 * 1 2 3 33 33 H 0.97001 * 119.99835 * 264.99955 * 4 2 1 34 34 H 1.09001 * 109.46730 * 299.99908 * 7 5 4 35 35 H 1.08992 * 109.46894 * 60.00010 * 7 5 4 36 36 H 1.08997 * 109.47691 * 299.99851 * 8 7 5 37 37 H 1.09004 * 109.47775 * 60.00264 * 8 7 5 38 38 H 1.08006 * 120.00019 * 359.97438 * 10 9 8 39 39 H 1.07994 * 120.00191 * 180.23681 * 11 10 9 40 40 H 1.07995 * 119.99650 * 179.72731 * 12 11 10 41 41 H 1.07999 * 120.00388 * 179.97438 * 13 12 11 42 42 H 1.08003 * 120.00079 * 179.97438 * 14 13 12 43 43 H 0.97003 * 119.99966 * 359.97438 * 17 15 2 44 44 H 1.08996 * 109.47106 * 64.66760 * 18 17 15 45 45 H 1.08998 * 109.46754 * 304.66975 * 18 17 15 46 46 H 0.96995 * 119.99933 * 355.39984 * 23 22 20 47 47 H 1.08998 * 117.49575 * 215.00498 * 28 19 18 48 48 H 1.09003 * 117.49971 * 0.02562 * 28 19 18 49 49 H 1.09005 * 117.50031 * 359.97438 * 29 19 18 50 50 H 1.09005 * 117.49813 * 144.97487 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8590 1.1586 -2.4115 7 6 2.6488 -0.7287 -3.5878 8 6 2.7009 0.2546 -4.7587 9 6 3.2033 -0.4558 -5.9893 10 6 4.5576 -0.4881 -6.2642 11 6 5.0188 -1.1439 -7.3904 12 6 4.1248 -1.7583 -8.2471 13 6 2.7700 -1.7216 -7.9749 14 6 2.3092 -1.0699 -6.8462 15 6 2.0324 -0.7105 1.2304 16 8 2.7296 -1.6965 1.1191 17 7 1.7068 -0.2500 2.4545 18 6 2.1956 -0.9404 3.6507 19 6 1.5919 -0.2902 4.8972 20 6 1.9522 1.1568 5.1148 21 1 1.2902 1.9363 4.7677 22 6 3.1271 1.4855 5.7572 23 7 3.9987 0.5468 6.0548 24 14 3.4807 3.2643 6.2048 25 1 4.7992 3.3515 6.8824 26 1 3.5033 4.0901 4.9708 27 1 2.4210 3.7654 7.1165 28 6 0.1930 -0.7415 5.3223 29 6 1.4162 -1.1688 6.1374 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1526 34 1 3.6480 -1.1212 -3.3986 35 1 1.9760 -1.5505 -3.8326 36 1 1.7020 0.6475 -4.9480 37 1 3.3741 1.0761 -4.5137 38 1 5.2557 -0.0039 -5.5974 39 1 6.0772 -1.1724 -7.6031 40 1 4.4847 -2.2668 -9.1293 41 1 2.0714 -2.2012 -8.6445 42 1 1.2507 -1.0408 -6.6338 43 1 1.1494 0.5389 2.5435 44 1 3.2823 -0.8681 3.6933 45 1 1.9025 -1.9894 3.6099 46 1 3.7867 -0.3840 5.8831 47 1 -0.4665 0.0082 5.7593 48 1 -0.2969 -1.5020 4.7141 49 1 1.7303 -2.2101 6.0652 50 1 1.5617 -0.7003 7.1109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337767237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:00 Heat of formation + Delta-G solvation = -66.039258 kcal Electronic energy + Delta-G solvation = -28813.952139 eV Core-core repulsion = 24804.979071 eV Total energy + Delta-G solvation = -4008.973068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.51322 -40.51163 -39.90957 -38.79954 -36.13437 -35.23073 -34.97019 -33.95545 -32.16721 -31.73799 -30.30010 -28.13802 -26.92503 -26.14245 -24.63304 -23.42877 -23.10794 -22.02328 -21.61314 -21.29541 -21.14180 -19.17134 -18.48414 -17.82489 -17.51295 -17.15495 -16.85574 -16.57843 -16.16264 -15.97120 -15.78815 -15.66588 -15.56982 -15.00114 -14.72127 -14.54531 -14.45458 -14.29984 -14.10316 -13.99090 -13.75387 -13.62973 -13.39644 -13.32135 -12.84576 -12.80097 -12.67637 -12.63036 -12.22745 -12.20651 -11.97399 -11.88704 -11.72030 -11.53160 -11.09327 -10.98826 -10.58125 -10.45999 -10.37851 -10.19579 -10.00438 -9.79190 -9.59145 -8.52948 -6.29059 0.45311 0.52974 1.45804 1.56097 1.57567 1.61521 1.79601 1.82351 2.40009 2.58425 2.91196 3.22333 3.25383 3.54659 3.68817 3.93398 3.97707 4.02132 4.03969 4.08022 4.17875 4.24978 4.28126 4.35411 4.35934 4.43470 4.53291 4.59365 4.64831 4.65375 4.69378 4.76307 4.80895 4.84103 4.95591 5.06328 5.07846 5.11900 5.20872 5.21576 5.29854 5.32594 5.42704 5.48419 5.60962 5.66252 5.75261 6.13383 6.15524 6.25795 6.44588 6.54668 6.69926 7.12136 7.15709 7.53745 8.86755 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.001824 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.821334 B =15346.369837 C =15868.559367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.131 3.869 3 H 0.105 0.895 4 N -0.709 5.709 5 C 0.516 3.484 6 O -0.576 6.576 7 C -0.124 4.124 8 C -0.059 4.059 9 C -0.091 4.091 10 C -0.131 4.131 11 C -0.128 4.128 12 C -0.133 4.133 13 C -0.126 4.126 14 C -0.126 4.126 15 C 0.504 3.496 16 O -0.583 6.583 17 N -0.690 5.690 18 C 0.175 3.825 19 C -0.022 4.022 20 C -0.576 4.576 21 H 0.055 0.945 22 C -0.020 4.020 23 N -0.931 5.931 24 Si 1.106 2.894 25 H -0.293 1.293 26 H -0.274 1.274 27 H -0.271 1.271 28 C -0.161 4.161 29 C -0.179 4.179 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.412 0.588 44 H 0.024 0.976 45 H 0.049 0.951 46 H 0.265 0.735 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 -4.854 -25.375 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 H 0.123 0.877 4 N -0.363 5.363 5 C 0.304 3.696 6 O -0.456 6.456 7 C -0.163 4.163 8 C -0.097 4.097 9 C -0.091 4.091 10 C -0.149 4.149 11 C -0.146 4.146 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.144 4.144 15 C 0.290 3.710 16 O -0.464 6.464 17 N -0.339 5.339 18 C 0.050 3.950 19 C -0.023 4.023 20 C -0.613 4.613 21 H 0.073 0.927 22 C -0.221 4.221 23 N -0.567 5.567 24 Si 0.930 3.070 25 H -0.219 1.219 26 H -0.200 1.200 27 H -0.196 1.196 28 C -0.198 4.198 29 C -0.217 4.217 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.248 0.752 44 H 0.042 0.958 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.113 0.887 49 H 0.099 0.901 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.266 -3.722 -24.793 25.432 hybrid contribution -0.804 -1.150 0.012 1.403 sum -5.071 -4.873 -24.782 25.760 Atomic orbital electron populations 1.22064 0.90775 1.03648 1.04212 1.20685 0.97129 0.97213 0.82725 0.87688 1.45835 1.67135 1.15080 1.08226 1.21252 0.76392 0.86934 0.85005 1.90697 1.51716 1.17488 1.85659 1.21640 1.04497 0.99748 0.90451 1.20237 1.02442 0.96501 0.90476 1.19930 0.93883 0.98808 0.96516 1.21295 0.95277 1.00118 0.98192 1.21429 1.00750 0.97698 0.94719 1.21477 0.93605 0.99792 1.00186 1.21453 0.96279 0.99180 0.97473 1.21306 1.00152 0.98022 0.94887 1.20993 0.79959 0.84520 0.85503 1.90633 1.40089 1.28498 1.87199 1.45746 1.51940 1.31654 1.04589 1.20666 0.96486 0.93593 0.84246 1.19349 0.96679 0.94810 0.91487 1.21470 1.08460 0.90222 1.41171 0.92687 1.26956 0.92761 1.08624 0.93721 1.70845 1.35710 1.02261 1.47914 0.83048 0.76009 0.70887 0.77076 1.21921 1.19972 1.19633 1.22913 0.90680 1.02626 1.03571 1.22699 1.04237 0.98533 0.96213 0.91113 0.89834 0.90590 0.74773 0.87511 0.86389 0.90556 0.91408 0.85663 0.84645 0.84336 0.84235 0.84898 0.75174 0.95751 0.93298 0.92435 0.89549 0.88709 0.90053 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.38 71.98 0.68 -2.51 16 2 C 0.13 3.54 2.98 44.25 0.13 3.67 16 3 H 0.11 3.07 7.58 -2.39 -0.02 3.05 16 4 N -0.71 -17.03 4.95 -446.09 -2.21 -19.24 16 5 C 0.52 12.14 7.79 87.66 0.68 12.83 16 6 O -0.58 -17.53 15.64 -3.04 -0.05 -17.57 16 7 C -0.12 -2.00 5.68 29.85 0.17 -1.83 16 8 C -0.06 -1.02 4.63 29.85 0.14 -0.88 16 9 C -0.09 -1.48 5.13 -19.87 -0.10 -1.58 16 10 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 11 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 12 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 13 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 14 C -0.13 -1.80 9.70 22.27 0.22 -1.58 16 15 C 0.50 17.22 7.22 87.66 0.63 17.85 16 16 O -0.58 -23.29 15.83 -3.02 -0.05 -23.34 16 17 N -0.69 -25.00 5.35 -463.06 -2.48 -27.48 16 18 C 0.17 7.51 5.43 86.38 0.47 7.97 16 19 C -0.02 -1.00 0.99 -52.93 -0.05 -1.05 16 20 C -0.58 -28.93 8.44 25.60 0.22 -28.71 16 21 H 0.05 2.70 7.82 -2.91 -0.02 2.67 16 22 C -0.02 -1.07 5.39 84.66 0.46 -0.61 16 23 N -0.93 -54.07 13.57 21.45 0.29 -53.78 16 24 Si 1.11 48.16 29.91 68.60 2.05 50.22 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 28 C -0.16 -6.03 9.96 30.62 0.30 -5.73 16 29 C -0.18 -7.64 8.74 30.62 0.27 -7.37 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.08 1.65 7.56 -2.39 -0.02 1.64 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.41 9.23 7.79 -92.71 -0.72 8.51 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.38 8.04 -2.39 -0.02 1.36 16 37 H 0.07 1.34 8.04 -2.38 -0.02 1.33 16 38 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 41 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 42 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.41 13.74 7.64 -92.71 -0.71 13.03 16 44 H 0.02 1.23 7.82 -2.39 -0.02 1.22 16 45 H 0.05 2.02 8.11 -2.39 -0.02 2.00 16 46 H 0.27 15.43 6.19 -92.71 -0.57 14.86 16 47 H 0.09 3.18 8.14 -2.39 -0.02 3.17 16 48 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 49 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 50 H 0.06 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -67.76 419.91 2.36 -65.40 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.29 Total: 41.58 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 5.09 Total: -15.79 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -4.40 Total: -100.49 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.10 Total: -40.91 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.05 Total: 50.22 kcal Total: -67.76 2.36 -65.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337767237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.639 kcal (2) G-P(sol) polarization free energy of solvation -67.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds