Wall clock time and date at job start Sat Apr 11 2020 07:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47175 * 2 1 4 4 C 1.46904 * 111.00170 * 61.68730 * 3 2 1 5 5 C 1.50692 * 109.47509 * 66.04288 * 4 3 2 6 6 O 1.21406 * 119.99789 * 0.02562 * 5 4 3 7 7 C 1.41725 * 120.00450 * 180.02562 * 5 4 3 8 8 C 1.37866 * 126.90952 * 359.97438 * 7 5 4 9 9 N 1.34666 * 109.61813 * 179.97438 * 8 7 5 10 10 C 1.46501 * 124.63985 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47245 * 265.00265 * 10 9 8 12 12 H 1.08001 * 120.00353 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99916 * 180.02562 * 11 10 9 14 14 N 1.31506 * 119.99935 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99974 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47154 * 59.99735 * 15 13 11 17 17 H 1.48500 * 109.47313 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46913 * 299.99937 * 15 13 11 19 19 C 1.38014 * 110.71123 * 0.02562 * 9 8 7 20 20 C 1.39144 * 133.03878 * 180.02562 * 19 9 8 21 21 C 1.37774 * 119.94806 * 179.97438 * 20 19 9 22 22 C 1.38723 * 120.63693 * 0.02562 * 21 20 19 23 23 C 1.37795 * 120.26842 * 359.97438 * 22 21 20 24 24 C 1.39190 * 119.67485 * 0.26555 * 23 22 21 25 25 C 1.46896 * 111.00084 * 297.73161 * 3 2 1 26 26 C 1.52998 * 109.46874 * 288.32697 * 25 3 2 27 27 H 1.08998 * 109.47309 * 58.34510 * 26 25 3 28 28 C 1.53005 * 109.47022 * 178.34617 * 26 25 3 29 29 O 1.42898 * 109.47295 * 298.34245 * 26 25 3 30 30 H 1.09003 * 109.46660 * 61.08215 * 1 2 3 31 31 H 1.08997 * 109.47004 * 181.08347 * 1 2 3 32 32 H 1.08997 * 109.46886 * 301.08807 * 1 2 3 33 33 H 1.08991 * 109.47553 * 239.99539 * 2 1 3 34 34 H 1.09005 * 109.46885 * 119.99286 * 2 1 3 35 35 H 1.08999 * 109.46661 * 306.04238 * 4 3 2 36 36 H 1.09000 * 109.46941 * 186.05021 * 4 3 2 37 37 H 1.08004 * 125.18687 * 359.97438 * 8 7 5 38 38 H 1.08998 * 109.47602 * 25.00968 * 10 9 8 39 39 H 1.09005 * 109.47006 * 145.00724 * 10 9 8 40 40 H 0.97007 * 120.00487 * 180.02562 * 14 13 11 41 41 H 1.08002 * 120.03023 * 359.97438 * 20 19 9 42 42 H 1.08002 * 119.67795 * 179.97438 * 21 20 19 43 43 H 1.08004 * 119.86613 * 179.97438 * 22 21 20 44 44 H 1.08006 * 120.16286 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.46926 * 48.32434 * 25 3 2 46 46 H 1.09002 * 109.47552 * 168.32791 * 25 3 2 47 47 H 1.08998 * 109.47167 * 59.99805 * 28 26 25 48 48 H 1.09003 * 109.47251 * 180.02562 * 28 26 25 49 49 H 1.08997 * 109.46866 * 299.99467 * 28 26 25 50 50 H 0.96701 * 114.00317 * 300.00363 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5819 2.0982 1.2074 5 6 2.2379 1.4860 2.4181 6 8 2.9966 0.5473 2.2878 7 6 1.9691 2.0061 3.7088 8 6 1.1377 3.0610 4.0198 9 7 1.1383 3.2597 5.3517 10 6 0.3672 4.2986 6.0389 11 6 1.2353 5.5124 6.2490 12 1 2.2589 5.5104 5.9047 13 6 0.7227 6.6255 6.8809 14 7 -0.5236 6.6278 7.3007 15 14 1.7986 8.1303 7.1408 16 1 2.2573 8.6440 5.8252 17 1 1.0174 9.1829 7.8386 18 1 2.9766 7.7601 7.9657 19 6 1.9657 2.3515 5.9803 20 6 2.3046 2.1397 7.3132 21 6 3.1794 1.1295 7.6482 22 6 3.7298 0.3168 6.6679 23 6 3.4063 0.5109 5.3426 24 6 2.5277 1.5312 4.9900 25 6 1.5935 2.0941 -1.2139 26 6 2.3758 1.5622 -2.4163 27 1 2.2066 0.4899 -2.5145 28 6 1.9028 2.2716 -3.6868 29 8 3.7702 1.8086 -2.2243 30 1 -0.3633 0.4970 -0.8996 31 1 -0.3633 -1.0275 0.0194 32 1 -0.3633 0.5306 0.8801 33 1 1.8934 -0.5138 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 0.4989 2.0205 1.3026 36 1 1.8656 3.1480 1.1322 37 1 0.5722 3.6396 3.3043 38 1 -0.4971 4.5705 5.4329 39 1 0.0298 3.9218 7.0045 40 1 -0.8844 7.4111 7.7449 41 1 1.8824 2.7668 8.0844 42 1 3.4398 0.9693 8.6841 43 1 4.4145 -0.4713 6.9446 44 1 3.8361 -0.1226 4.5807 45 1 0.5275 1.9324 -1.3736 46 1 1.7860 3.1607 -1.0982 47 1 2.0721 3.3438 -3.5886 48 1 2.4599 1.8923 -4.5435 49 1 0.8393 2.0835 -3.8333 50 1 3.9948 2.7444 -2.1290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352214572.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:10 Heat of formation + Delta-G solvation = -26.084178 kcal Electronic energy + Delta-G solvation = -30160.191773 eV Core-core repulsion = 26152.951288 eV Total energy + Delta-G solvation = -4007.240485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01408 -39.44906 -37.92200 -36.65440 -36.10842 -33.63459 -31.96085 -31.51613 -30.59049 -29.72311 -29.13374 -27.83729 -26.84586 -25.16095 -23.74421 -22.90447 -22.37441 -21.48112 -20.40018 -20.22493 -18.39035 -16.98052 -16.78608 -16.53917 -16.13129 -16.05893 -15.83690 -15.17730 -14.99026 -14.89901 -14.54274 -14.47973 -14.04806 -13.77270 -13.71290 -13.31566 -13.27151 -13.08583 -12.76447 -12.53831 -12.45061 -12.27749 -12.08098 -11.97390 -11.82009 -11.77208 -11.56412 -11.43243 -11.18983 -10.96295 -10.92729 -10.88065 -10.67394 -10.56501 -10.26841 -10.18427 -9.82040 -9.06610 -9.01844 -8.81246 -8.17748 -7.75741 -7.14825 -6.42695 -4.53688 1.35615 1.97773 2.37342 3.12411 3.17411 3.20309 3.52412 3.67894 3.70256 4.15595 4.36598 4.43979 4.55085 4.66627 4.90561 4.90808 4.92914 5.05166 5.10218 5.14449 5.25321 5.25878 5.29885 5.33243 5.44288 5.47584 5.48865 5.51517 5.57164 5.71101 5.75122 5.86021 5.88263 5.98601 6.02374 6.08148 6.16061 6.25606 6.37100 6.49876 6.58167 6.75678 6.91848 7.01418 7.05150 7.06175 7.19923 7.34073 7.48230 7.64047 7.66054 7.77547 7.82785 8.29352 8.53435 9.15351 10.63563 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.003019 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.033542 B = 9271.260803 C =11056.672127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.042 3.958 3 N -0.509 5.509 4 C 0.004 3.996 5 C 0.432 3.568 6 O -0.468 6.468 7 C -0.311 4.311 8 C 0.152 3.848 9 N -0.424 5.424 10 C 0.227 3.773 11 C -0.548 4.548 12 H 0.067 0.933 13 C 0.069 3.931 14 N -0.889 5.889 15 Si 0.906 3.094 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.084 3.916 20 C -0.101 4.101 21 C -0.122 4.122 22 C -0.144 4.144 23 C -0.082 4.082 24 C -0.057 4.057 25 C 0.014 3.986 26 C 0.109 3.891 27 H 0.095 0.905 28 C -0.185 4.185 29 O -0.549 6.549 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.172 0.828 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.270 0.730 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 -8.446 -13.523 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.086 4.086 3 N -0.232 5.232 4 C -0.124 4.124 5 C 0.313 3.687 6 O -0.346 6.346 7 C -0.320 4.320 8 C 0.010 3.990 9 N -0.097 5.097 10 C 0.109 3.891 11 C -0.586 4.586 12 H 0.085 0.915 13 C -0.135 4.135 14 N -0.526 5.526 15 Si 0.733 3.267 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.021 4.021 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.162 4.162 23 C -0.101 4.101 24 C -0.061 4.061 25 C -0.114 4.114 26 C 0.049 3.951 27 H 0.113 0.887 28 C -0.244 4.244 29 O -0.353 6.353 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.189 0.811 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.142 0.858 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.094 -9.218 -13.304 16.223 hybrid contribution -0.814 1.925 0.290 2.110 sum 0.280 -7.293 -13.014 14.921 Atomic orbital electron populations 1.22484 0.98929 1.02431 1.01686 1.22354 0.91898 0.90137 1.04198 1.61938 1.59165 1.01980 1.00098 1.22552 0.99208 0.99737 0.90907 1.19724 0.79366 0.82285 0.87338 1.90450 1.30668 1.25311 1.88180 1.19627 1.12148 1.06202 0.93993 1.22508 0.96177 0.94832 0.85508 1.44586 1.34208 1.25387 1.05528 1.19926 0.91291 0.84131 0.93710 1.21264 0.98817 0.98012 1.40486 0.91524 1.24934 0.95243 0.98896 0.94455 1.69898 1.13748 1.30722 1.38189 0.86407 0.80223 0.81297 0.78806 1.19813 1.20870 1.19775 1.18322 0.96642 0.93101 0.94015 1.20195 0.99725 0.99071 0.93102 1.20702 0.98364 0.96083 0.98983 1.20856 1.01894 1.00748 0.92738 1.20492 0.96960 0.96749 0.95855 1.18837 0.98938 0.96997 0.91315 1.22981 0.98165 0.98829 0.91420 1.21844 0.81631 1.00157 0.91475 0.88700 1.22505 1.01932 1.01188 0.98732 1.86628 1.23017 1.30402 1.95280 0.92757 0.92014 0.92328 0.90969 0.88591 0.91693 0.88115 0.81106 0.93015 0.93181 0.92005 0.85825 0.86286 0.86573 0.85781 0.93439 0.90619 0.92231 0.91690 0.91792 0.78250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 9.28 37.16 0.34 -1.62 16 2 C 0.04 0.50 5.57 -3.82 -0.02 0.48 16 3 N -0.51 -6.29 4.30 -236.08 -1.02 -7.31 16 4 C 0.00 0.06 4.51 -4.98 -0.02 0.03 16 5 C 0.43 7.10 6.66 -32.98 -0.22 6.88 16 6 O -0.47 -8.85 13.95 5.45 0.08 -8.77 16 7 C -0.31 -5.55 6.11 -104.88 -0.64 -6.19 16 8 C 0.15 2.62 10.71 -16.44 -0.18 2.44 16 9 N -0.42 -8.56 2.70 -115.29 -0.31 -8.87 16 10 C 0.23 5.13 5.68 -5.20 -0.03 5.10 16 11 C -0.55 -13.78 9.39 -34.44 -0.32 -14.10 16 12 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -23.45 13.29 55.43 0.74 -22.71 16 15 Si 0.91 19.91 29.54 -169.99 -5.02 14.89 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 C 0.08 1.70 6.78 -83.96 -0.57 1.13 16 20 C -0.10 -1.90 9.96 -39.41 -0.39 -2.29 16 21 C -0.12 -1.97 10.01 -39.57 -0.40 -2.37 16 22 C -0.14 -2.28 10.03 -39.56 -0.40 -2.68 16 23 C -0.08 -1.47 9.80 -39.39 -0.39 -1.86 16 24 C -0.06 -1.12 6.24 -104.93 -0.65 -1.77 16 25 C 0.01 0.14 4.48 -3.83 -0.02 0.12 16 26 C 0.11 0.99 3.59 -26.73 -0.10 0.90 16 27 H 0.10 0.93 6.65 -51.93 -0.35 0.58 16 28 C -0.19 -1.26 9.53 37.16 0.35 -0.91 16 29 O -0.55 -6.16 13.23 -35.23 -0.47 -6.63 16 30 H 0.05 0.47 6.28 -51.93 -0.33 0.15 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.62 6.26 -51.93 -0.32 0.30 16 33 H 0.07 0.82 6.58 -51.93 -0.34 0.48 16 34 H 0.10 1.41 5.85 -51.93 -0.30 1.10 16 35 H 0.07 0.73 6.03 -51.93 -0.31 0.42 16 36 H 0.10 1.16 7.86 -51.93 -0.41 0.75 16 37 H 0.17 2.33 7.91 -52.48 -0.42 1.92 16 38 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 41 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 44 H 0.12 2.18 7.38 -52.48 -0.39 1.79 16 45 H 0.05 0.40 5.88 -51.93 -0.31 0.10 16 46 H 0.08 0.65 7.82 -51.93 -0.41 0.25 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.37 2.99 9.05 45.56 0.41 3.40 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -30.05 404.77 -10.46 -40.51 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.81 Total: 7.82 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -3.74 Total: -15.02 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.59 Total: -38.89 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.39 Total: -15.40 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.05 -10.46 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352214572.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.424 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds