Wall clock time and date at job start Sat Apr 11 2020 07:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47175 * 2 1 4 4 C 1.46904 * 111.00170 * 61.68730 * 3 2 1 5 5 C 1.50692 * 109.47509 * 66.04288 * 4 3 2 6 6 O 1.21406 * 119.99789 * 0.02562 * 5 4 3 7 7 C 1.41725 * 120.00450 * 180.02562 * 5 4 3 8 8 C 1.37866 * 126.90952 * 359.97438 * 7 5 4 9 9 N 1.34666 * 109.61813 * 179.97438 * 8 7 5 10 10 C 1.46501 * 124.63985 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47245 * 265.00265 * 10 9 8 12 12 H 1.08001 * 120.00353 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99916 * 180.02562 * 11 10 9 14 14 N 1.31506 * 119.99935 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99974 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47154 * 59.99735 * 15 13 11 17 17 H 1.48500 * 109.47313 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46913 * 299.99937 * 15 13 11 19 19 C 1.38014 * 110.71123 * 0.02562 * 9 8 7 20 20 C 1.39144 * 133.03878 * 180.02562 * 19 9 8 21 21 C 1.37774 * 119.94806 * 179.97438 * 20 19 9 22 22 C 1.38723 * 120.63693 * 0.02562 * 21 20 19 23 23 C 1.37795 * 120.26842 * 359.97438 * 22 21 20 24 24 C 1.39190 * 119.67485 * 0.26555 * 23 22 21 25 25 C 1.46896 * 111.00084 * 297.73161 * 3 2 1 26 26 C 1.52998 * 109.46874 * 288.32697 * 25 3 2 27 27 H 1.08998 * 109.47309 * 58.34510 * 26 25 3 28 28 C 1.53005 * 109.47022 * 178.34617 * 26 25 3 29 29 O 1.42898 * 109.47295 * 298.34245 * 26 25 3 30 30 H 1.09003 * 109.46660 * 61.08215 * 1 2 3 31 31 H 1.08997 * 109.47004 * 181.08347 * 1 2 3 32 32 H 1.08997 * 109.46886 * 301.08807 * 1 2 3 33 33 H 1.08991 * 109.47553 * 239.99539 * 2 1 3 34 34 H 1.09005 * 109.46885 * 119.99286 * 2 1 3 35 35 H 1.08999 * 109.46661 * 306.04238 * 4 3 2 36 36 H 1.09000 * 109.46941 * 186.05021 * 4 3 2 37 37 H 1.08004 * 125.18687 * 359.97438 * 8 7 5 38 38 H 1.08998 * 109.47602 * 25.00968 * 10 9 8 39 39 H 1.09005 * 109.47006 * 145.00724 * 10 9 8 40 40 H 0.97007 * 120.00487 * 180.02562 * 14 13 11 41 41 H 1.08002 * 120.03023 * 359.97438 * 20 19 9 42 42 H 1.08002 * 119.67795 * 179.97438 * 21 20 19 43 43 H 1.08004 * 119.86613 * 179.97438 * 22 21 20 44 44 H 1.08006 * 120.16286 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.46926 * 48.32434 * 25 3 2 46 46 H 1.09002 * 109.47552 * 168.32791 * 25 3 2 47 47 H 1.08998 * 109.47167 * 59.99805 * 28 26 25 48 48 H 1.09003 * 109.47251 * 180.02562 * 28 26 25 49 49 H 1.08997 * 109.46866 * 299.99467 * 28 26 25 50 50 H 0.96701 * 114.00317 * 300.00363 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5819 2.0982 1.2074 5 6 2.2379 1.4860 2.4181 6 8 2.9966 0.5473 2.2878 7 6 1.9691 2.0061 3.7088 8 6 1.1377 3.0610 4.0198 9 7 1.1383 3.2597 5.3517 10 6 0.3672 4.2986 6.0389 11 6 1.2353 5.5124 6.2490 12 1 2.2589 5.5104 5.9047 13 6 0.7227 6.6255 6.8809 14 7 -0.5236 6.6278 7.3007 15 14 1.7986 8.1303 7.1408 16 1 2.2573 8.6440 5.8252 17 1 1.0174 9.1829 7.8386 18 1 2.9766 7.7601 7.9657 19 6 1.9657 2.3515 5.9803 20 6 2.3046 2.1397 7.3132 21 6 3.1794 1.1295 7.6482 22 6 3.7298 0.3168 6.6679 23 6 3.4063 0.5109 5.3426 24 6 2.5277 1.5312 4.9900 25 6 1.5935 2.0941 -1.2139 26 6 2.3758 1.5622 -2.4163 27 1 2.2066 0.4899 -2.5145 28 6 1.9028 2.2716 -3.6868 29 8 3.7702 1.8086 -2.2243 30 1 -0.3633 0.4970 -0.8996 31 1 -0.3633 -1.0275 0.0194 32 1 -0.3633 0.5306 0.8801 33 1 1.8934 -0.5138 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 0.4989 2.0205 1.3026 36 1 1.8656 3.1480 1.1322 37 1 0.5722 3.6396 3.3043 38 1 -0.4971 4.5705 5.4329 39 1 0.0298 3.9218 7.0045 40 1 -0.8844 7.4111 7.7449 41 1 1.8824 2.7668 8.0844 42 1 3.4398 0.9693 8.6841 43 1 4.4145 -0.4713 6.9446 44 1 3.8361 -0.1226 4.5807 45 1 0.5275 1.9324 -1.3736 46 1 1.7860 3.1607 -1.0982 47 1 2.0721 3.3438 -3.5886 48 1 2.4599 1.8923 -4.5435 49 1 0.8393 2.0835 -3.8333 50 1 3.9948 2.7444 -2.1290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352214572.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:09 Heat of formation + Delta-G solvation = -43.841311 kcal Electronic energy + Delta-G solvation = -30160.961780 eV Core-core repulsion = 26152.951288 eV Total energy + Delta-G solvation = -4008.010492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43189 -40.51477 -38.94185 -38.06178 -37.02937 -35.45277 -33.53642 -32.24113 -31.60443 -31.21854 -30.27793 -29.28426 -28.06539 -26.11671 -25.31766 -24.12141 -23.55485 -22.62727 -21.86410 -21.15278 -19.70520 -18.84390 -18.05258 -17.48405 -17.29873 -17.18748 -16.77264 -16.59129 -16.37230 -16.01169 -15.84291 -15.70765 -15.20156 -15.08047 -14.79843 -14.68557 -14.53163 -14.27090 -14.05154 -13.71650 -13.57769 -13.36962 -13.20066 -13.09688 -12.92729 -12.78718 -12.72770 -12.62487 -12.54439 -12.45726 -12.40236 -12.30840 -11.80654 -11.68214 -11.59079 -11.47779 -10.96461 -10.76309 -10.48845 -10.28710 -9.17775 -9.06858 -8.63878 -8.31476 -6.53771 -0.01101 0.60120 0.97728 1.38117 1.39617 1.47611 2.02471 2.31690 2.37991 2.79409 2.95262 3.03837 3.47796 3.71842 3.78968 3.84023 3.86295 4.12575 4.14174 4.20901 4.25021 4.30980 4.33886 4.37798 4.43561 4.50895 4.57483 4.61730 4.64065 4.68976 4.71815 4.74744 4.88233 4.91284 4.92452 5.02417 5.04336 5.10515 5.22888 5.23880 5.31543 5.36880 5.51702 5.56283 5.67802 5.76526 5.78799 5.93249 6.09518 6.21294 6.26658 6.33766 6.60074 7.00400 7.02237 7.18841 8.69320 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.003019 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.033542 B = 9271.260803 C =11056.672127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.044 3.956 3 N -0.529 5.529 4 C 0.012 3.988 5 C 0.431 3.569 6 O -0.497 6.497 7 C -0.318 4.318 8 C 0.155 3.845 9 N -0.439 5.439 10 C 0.244 3.756 11 C -0.558 4.558 12 H 0.053 0.947 13 C 0.028 3.972 14 N -0.915 5.915 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.275 1.275 19 C 0.057 3.943 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.134 4.134 23 C -0.096 4.096 24 C -0.082 4.082 25 C 0.017 3.983 26 C 0.108 3.892 27 H 0.084 0.916 28 C -0.177 4.177 29 O -0.575 6.575 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.206 0.794 38 H 0.051 0.949 39 H 0.029 0.971 40 H 0.273 0.727 41 H 0.114 0.886 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.123 0.877 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.581 -7.970 -14.612 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.083 4.083 3 N -0.252 5.252 4 C -0.116 4.116 5 C 0.314 3.686 6 O -0.377 6.377 7 C -0.327 4.327 8 C 0.015 3.985 9 N -0.114 5.114 10 C 0.125 3.875 11 C -0.596 4.596 12 H 0.072 0.928 13 C -0.174 4.174 14 N -0.553 5.553 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.200 1.200 19 C -0.048 4.048 20 C -0.145 4.145 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.114 4.114 24 C -0.086 4.086 25 C -0.110 4.110 26 C 0.048 3.952 27 H 0.102 0.898 28 C -0.235 4.235 29 O -0.382 6.382 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.223 0.777 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.141 0.859 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.177 -8.747 -14.415 16.902 hybrid contribution -0.769 1.660 0.645 1.940 sum 0.407 -7.087 -13.770 15.492 Atomic orbital electron populations 1.22401 0.97172 1.03000 1.02144 1.22222 0.93301 0.90075 1.02742 1.61881 1.60120 1.02225 1.00950 1.22469 0.99744 0.99991 0.89392 1.20183 0.78752 0.81593 0.88070 1.90440 1.32068 1.26601 1.88640 1.19936 1.12053 1.06305 0.94409 1.23035 0.95881 0.94694 0.84883 1.44450 1.34959 1.25510 1.06495 1.19496 0.91083 0.83931 0.92985 1.21426 0.98487 0.99163 1.40473 0.92835 1.25638 0.96277 1.01322 0.94129 1.69975 1.14981 1.31533 1.38829 0.85522 0.78559 0.78356 0.78830 1.19158 1.20142 1.20003 1.18665 0.97458 0.93749 0.94882 1.20385 1.01179 1.00388 0.92573 1.21092 0.96618 0.94519 1.00811 1.21259 1.01375 1.00917 0.91681 1.20678 0.97129 0.96656 0.96983 1.19227 0.99677 0.97616 0.92064 1.23036 0.98929 0.99073 0.89995 1.21899 0.80819 0.99946 0.92500 0.89771 1.22413 1.02512 1.01411 0.97165 1.86587 1.24403 1.31710 1.95468 0.91006 0.91458 0.92995 0.90713 0.91756 0.89801 0.86497 0.77704 0.93115 0.95294 0.91776 0.86797 0.82907 0.82966 0.85904 0.91966 0.89470 0.91276 0.91957 0.90565 0.76939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 9.28 71.98 0.67 -2.78 16 2 C 0.04 1.05 5.57 86.30 0.48 1.53 16 3 N -0.53 -12.38 4.30 -900.82 -3.88 -16.26 16 4 C 0.01 0.29 4.51 85.55 0.39 0.67 16 5 C 0.43 14.14 6.66 26.55 0.18 14.31 16 6 O -0.50 -19.17 13.95 -3.42 -0.05 -19.22 16 7 C -0.32 -11.41 6.11 -20.03 -0.12 -11.53 16 8 C 0.15 5.31 10.71 84.17 0.90 6.21 16 9 N -0.44 -18.10 2.70 -518.65 -1.40 -19.50 16 10 C 0.24 11.29 5.68 85.63 0.49 11.78 16 11 C -0.56 -28.39 9.39 25.60 0.24 -28.15 16 12 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 13 C 0.03 1.43 5.46 84.66 0.46 1.89 16 14 N -0.92 -48.52 13.29 21.45 0.28 -48.23 16 15 Si 0.96 40.54 29.54 68.60 2.03 42.57 16 16 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 C 0.06 2.34 6.78 38.90 0.26 2.60 16 20 C -0.13 -4.78 9.96 22.38 0.22 -4.56 16 21 C -0.11 -3.46 10.01 22.28 0.22 -3.24 16 22 C -0.13 -4.04 10.03 22.28 0.22 -3.82 16 23 C -0.10 -3.43 9.80 22.39 0.22 -3.21 16 24 C -0.08 -3.26 6.24 -20.06 -0.13 -3.38 16 25 C 0.02 0.28 4.48 86.30 0.39 0.67 16 26 C 0.11 1.79 3.59 30.60 0.11 1.90 16 27 H 0.08 1.56 6.65 -2.39 -0.02 1.54 16 28 C -0.18 -1.99 9.53 71.98 0.69 -1.31 16 29 O -0.58 -12.37 13.23 -148.98 -1.97 -14.34 16 30 H 0.07 1.06 6.28 -2.39 -0.01 1.04 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.02 6.26 -2.39 -0.01 1.00 16 33 H 0.07 1.68 6.58 -2.39 -0.02 1.66 16 34 H 0.06 1.93 5.85 -2.38 -0.01 1.92 16 35 H 0.08 1.69 6.03 -2.39 -0.01 1.68 16 36 H 0.12 2.41 7.86 -2.39 -0.02 2.39 16 37 H 0.21 5.26 7.91 -2.91 -0.02 5.24 16 38 H 0.05 2.33 8.10 -2.39 -0.02 2.31 16 39 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.27 13.68 8.31 -92.70 -0.77 12.91 16 41 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.12 4.36 7.38 -2.91 -0.02 4.34 16 45 H 0.06 0.86 5.88 -2.39 -0.01 0.84 16 46 H 0.09 1.24 7.82 -2.39 -0.02 1.22 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.38 5.73 9.05 -74.06 -0.67 5.06 16 Total: -1.00 -66.19 404.77 1.19 -65.01 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.29 Total: 30.40 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 5.89 Total: -20.41 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -4.99 Total: -83.99 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -2.02 Total: -33.56 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -66.19 1.19 -65.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352214572.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.164 kcal (2) G-P(sol) polarization free energy of solvation -66.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds