Wall clock time and date at job start Sat Apr 11 2020 07:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46996 * 2 1 4 4 C 1.45643 * 117.70903 * 270.02570 * 3 2 1 5 5 C 1.53468 * 110.73984 * 157.95649 * 4 3 2 6 6 N 1.47265 * 107.93183 * 46.91245 * 5 4 3 7 7 C 1.34777 * 121.34973 * 118.51319 * 6 5 4 8 8 O 1.21285 * 119.99720 * 183.88760 * 7 6 5 9 9 C 1.50698 * 120.00119 * 3.89292 * 7 6 5 10 10 C 1.53005 * 109.46835 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46929 * 305.79628 * 10 9 7 12 12 C 1.50696 * 109.47224 * 65.80112 * 10 9 7 13 13 H 1.07996 * 120.00125 * 35.08454 * 12 10 9 14 14 C 1.37879 * 119.99927 * 214.80647 * 12 10 9 15 15 N 1.31516 * 120.00046 * 177.51597 * 14 12 10 16 16 Si 1.86801 * 119.99818 * 357.51075 * 14 12 10 17 17 H 1.48504 * 109.47089 * 94.53124 * 16 14 12 18 18 H 1.48499 * 109.46810 * 214.52784 * 16 14 12 19 19 H 1.48496 * 109.47522 * 334.52881 * 16 14 12 20 20 C 1.50705 * 109.46940 * 185.79906 * 10 9 7 21 21 C 1.38237 * 120.00238 * 300.32006 * 20 10 9 22 22 C 1.38233 * 119.99965 * 179.74301 * 21 20 10 23 23 C 1.38234 * 120.00004 * 0.55066 * 22 21 20 24 24 C 1.38241 * 120.00059 * 359.70125 * 23 22 21 25 25 C 1.38234 * 119.99701 * 0.02562 * 24 23 22 26 26 C 1.47049 * 117.29252 * 298.23587 * 6 5 4 27 27 H 1.08995 * 109.56549 * 283.16658 * 26 6 5 28 28 C 1.53000 * 109.56369 * 162.93293 * 26 6 5 29 29 C 1.33384 * 117.70020 * 89.99913 * 3 2 1 30 30 O 1.21284 * 118.49149 * 4.32427 * 29 3 2 31 31 H 1.08994 * 109.47469 * 59.99477 * 1 2 3 32 32 H 1.08999 * 109.47067 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47357 * 299.99464 * 1 2 3 34 34 H 1.08998 * 109.47080 * 240.00816 * 2 1 3 35 35 H 1.08998 * 109.47112 * 119.99875 * 2 1 3 36 36 H 1.08999 * 109.21664 * 278.41242 * 4 3 2 37 37 H 1.09001 * 109.21688 * 37.74252 * 4 3 2 38 38 H 1.09001 * 109.84680 * 287.31145 * 5 4 3 39 39 H 1.09006 * 109.83611 * 166.50482 * 5 4 3 40 40 H 1.09000 * 109.47652 * 60.00157 * 9 7 6 41 41 H 1.08999 * 109.46833 * 299.99364 * 9 7 6 42 42 H 0.96997 * 119.99870 * 180.02562 * 15 14 12 43 43 H 1.07999 * 119.99830 * 359.97438 * 21 20 10 44 44 H 1.07997 * 119.99754 * 180.27249 * 22 21 20 45 45 H 1.07997 * 120.00090 * 179.72665 * 23 22 21 46 46 H 1.07995 * 119.99841 * 180.02562 * 24 23 22 47 47 H 1.08005 * 119.99821 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.47510 * 69.26090 * 28 26 6 49 49 H 1.08998 * 109.47006 * 189.26191 * 28 26 6 50 50 H 1.08999 * 109.47153 * 309.25725 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2435 2.0199 -1.2894 5 6 2.2125 3.5481 -1.1517 6 7 3.0454 3.9161 0.0057 7 6 4.1378 4.6927 -0.1352 8 8 4.8458 4.9228 0.8223 9 6 4.4795 5.2753 -1.4824 10 6 5.7568 6.1098 -1.3679 11 1 5.6363 6.8521 -0.5790 12 6 6.9179 5.2082 -1.0364 13 1 6.9587 4.2086 -1.4431 14 6 7.9310 5.6615 -0.2183 15 7 8.9195 4.8587 0.1107 16 14 7.8997 7.4158 0.4226 17 1 7.2700 7.4403 1.7674 18 1 9.2884 7.9332 0.5168 19 1 7.1157 8.2684 -0.5066 20 6 6.0204 6.8070 -2.6778 21 6 6.2010 6.0665 -3.8310 22 6 6.4374 6.7063 -5.0333 23 6 6.5045 8.0862 -5.0805 24 6 6.3291 8.8266 -3.9263 25 6 6.0871 8.1870 -2.7250 26 6 2.6331 3.4069 1.3221 27 1 1.7901 3.9907 1.6917 28 6 3.8020 3.5172 2.3031 29 6 2.2249 1.9658 1.1810 30 8 2.0767 1.3053 2.1873 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8901 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2144 1.7122 -1.6775 37 1 1.4646 1.7080 -1.9852 38 1 1.1883 3.8844 -0.9898 39 1 2.6131 4.0091 -2.0547 40 1 3.6605 5.9089 -1.8227 41 1 4.6362 4.4682 -2.1980 42 1 9.6320 5.1775 0.6865 43 1 6.1536 4.9882 -3.7932 44 1 6.5741 6.1278 -5.9350 45 1 6.6936 8.5858 -6.0190 46 1 6.3812 9.9046 -3.9633 47 1 5.9504 8.7654 -1.8232 48 1 3.9944 4.5674 2.5225 49 1 3.5528 2.9931 3.2258 50 1 4.6917 3.0697 1.8601 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356900313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:15 Heat of formation + Delta-G solvation = -21.590307 kcal Electronic energy + Delta-G solvation = -31426.077345 eV Core-core repulsion = 27419.031728 eV Total energy + Delta-G solvation = -4007.045617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93062 -39.20565 -38.43826 -36.54079 -35.29547 -34.20304 -32.00911 -31.51603 -31.04851 -30.25867 -28.95727 -28.19775 -26.06579 -25.10796 -23.39052 -22.87454 -22.35737 -21.91973 -20.25976 -19.20715 -18.20549 -17.40879 -17.03734 -16.84730 -16.21854 -15.62748 -15.50957 -15.47424 -14.98660 -14.68936 -14.28034 -13.97057 -13.88554 -13.77820 -13.41061 -13.14621 -12.91402 -12.82711 -12.51668 -12.46760 -12.44446 -12.31391 -12.04956 -11.84030 -11.82129 -11.69331 -11.66526 -11.30367 -11.17784 -11.00642 -10.73099 -10.64257 -10.39691 -10.05073 -9.90074 -9.57162 -9.18597 -8.88208 -8.60818 -8.46047 -8.33032 -8.23682 -7.83643 -6.00510 -3.98371 2.05608 2.10603 2.57847 2.75222 3.13720 3.31052 3.41022 3.44678 3.48810 4.34278 4.47695 4.54814 4.56422 4.80295 4.90034 4.98164 5.06721 5.14986 5.20651 5.26971 5.31035 5.34619 5.48601 5.50260 5.51241 5.54741 5.65107 5.65827 5.76433 5.84353 5.91129 5.94833 6.01223 6.08983 6.19091 6.24638 6.27641 6.35633 6.47325 6.57352 6.66459 6.78675 6.89219 6.95877 7.10664 7.22150 7.32076 7.53346 7.67284 7.72351 7.77817 8.08834 8.49134 8.83687 8.97803 9.63640 11.12228 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012858 B = 0.003660 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.126138 B = 7647.426562 C = 8969.819703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 N -0.602 5.602 4 C 0.097 3.903 5 C 0.097 3.903 6 N -0.633 5.633 7 C 0.522 3.478 8 O -0.482 6.482 9 C -0.116 4.116 10 C 0.057 3.943 11 H 0.050 0.950 12 C -0.489 4.489 13 H 0.070 0.930 14 C 0.087 3.913 15 N -0.897 5.897 16 Si 0.865 3.135 17 H -0.277 1.277 18 H -0.295 1.295 19 H -0.250 1.250 20 C -0.038 4.038 21 C -0.106 4.106 22 C -0.127 4.127 23 C -0.150 4.150 24 C -0.126 4.126 25 C -0.136 4.136 26 C 0.140 3.860 27 H 0.095 0.905 28 C -0.131 4.131 29 C 0.514 3.486 30 O -0.544 6.544 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.262 0.738 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.115 0.885 48 H 0.090 0.910 49 H 0.054 0.946 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.965 -2.618 -7.599 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.336 5.336 4 C -0.027 4.027 5 C -0.027 4.027 6 N -0.373 5.373 7 C 0.311 3.689 8 O -0.352 6.352 9 C -0.156 4.156 10 C 0.038 3.962 11 H 0.068 0.932 12 C -0.526 4.526 13 H 0.088 0.912 14 C -0.116 4.116 15 N -0.534 5.534 16 Si 0.693 3.307 17 H -0.203 1.203 18 H -0.222 1.222 19 H -0.175 1.175 20 C -0.039 4.039 21 C -0.124 4.124 22 C -0.145 4.145 23 C -0.168 4.168 24 C -0.144 4.144 25 C -0.154 4.154 26 C 0.034 3.966 27 H 0.112 0.888 28 C -0.189 4.189 29 C 0.301 3.699 30 O -0.421 6.421 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.133 0.867 48 H 0.109 0.891 49 H 0.073 0.927 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.397 -2.810 -6.412 17.829 hybrid contribution 0.193 0.771 0.108 0.802 sum -16.204 -2.039 -6.305 17.507 Atomic orbital electron populations 1.22086 0.95814 1.02164 1.02154 1.21507 0.94381 0.82902 1.03543 1.47272 1.65710 1.14570 1.05999 1.21915 1.02456 0.93533 0.84769 1.22080 0.96184 0.93370 0.91065 1.48512 1.28609 1.53604 1.06589 1.20851 0.78362 0.77555 0.92136 1.90785 1.46983 1.57332 1.40141 1.21736 0.99847 1.00381 0.93636 1.18131 0.93044 0.94882 0.90144 0.93178 1.20557 1.03466 0.99382 1.29151 0.91220 1.24878 0.94943 0.96948 0.94797 1.69885 1.11641 1.35727 1.36139 0.87063 0.77037 0.86295 0.80259 1.20286 1.22170 1.17459 1.20743 0.93912 0.92776 0.96436 1.20924 0.99881 0.99766 0.91846 1.21033 1.01308 0.94455 0.97712 1.20860 1.04065 0.94279 0.97628 1.20981 1.01353 0.98883 0.93192 1.21238 1.02122 0.94819 0.97214 1.21269 1.00122 0.89428 0.85803 0.88771 1.22087 0.95660 1.04752 0.96391 1.20564 0.76319 0.90089 0.82880 1.90692 1.52160 1.63529 1.35727 0.92651 0.91618 0.92336 0.90583 0.89426 0.90878 0.89718 0.90712 0.87343 0.91199 0.89767 0.92840 0.86468 0.87246 0.87467 0.87412 0.86694 0.89122 0.92679 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.23 37.16 0.38 -0.97 16 2 C 0.10 0.99 5.92 -4.04 -0.02 0.97 16 3 N -0.60 -7.11 2.81 -174.59 -0.49 -7.60 16 4 C 0.10 0.88 6.51 -4.26 -0.03 0.85 16 5 C 0.10 0.92 6.48 -3.38 -0.02 0.90 16 6 N -0.63 -9.03 2.97 -166.26 -0.49 -9.52 16 7 C 0.52 9.47 7.31 -10.99 -0.08 9.39 16 8 O -0.48 -10.93 10.89 5.55 0.06 -10.87 16 9 C -0.12 -1.95 3.26 -27.88 -0.09 -2.04 16 10 C 0.06 1.23 1.20 -92.92 -0.11 1.11 16 11 H 0.05 1.15 4.99 -51.93 -0.26 0.89 16 12 C -0.49 -12.84 7.13 -34.44 -0.25 -13.08 16 13 H 0.07 2.00 8.06 -52.49 -0.42 1.58 16 14 C 0.09 2.48 5.47 -17.82 -0.10 2.39 16 15 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 16 Si 0.87 21.79 26.98 -169.99 -4.59 17.21 16 17 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 19 H -0.25 -5.69 3.89 56.52 0.22 -5.47 16 20 C -0.04 -0.75 4.63 -104.62 -0.48 -1.23 16 21 C -0.11 -1.91 8.88 -39.58 -0.35 -2.27 16 22 C -0.13 -2.03 10.05 -39.58 -0.40 -2.42 16 23 C -0.15 -2.32 10.05 -39.58 -0.40 -2.72 16 24 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 25 C -0.14 -2.55 8.68 -39.58 -0.34 -2.90 16 26 C 0.14 2.09 3.67 -68.91 -0.25 1.84 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 C -0.13 -2.33 7.58 37.16 0.28 -2.04 16 29 C 0.51 7.69 7.09 -11.73 -0.08 7.60 16 30 O -0.54 -9.65 15.41 5.55 0.09 -9.56 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.60 8.01 -51.93 -0.42 0.18 16 35 H 0.09 1.05 7.10 -51.93 -0.37 0.69 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.87 6.04 -51.93 -0.31 0.56 16 40 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 41 H 0.08 1.30 7.16 -51.93 -0.37 0.93 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.12 2.05 7.63 -52.49 -0.40 1.64 16 44 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.12 2.15 6.38 -52.48 -0.33 1.82 16 48 H 0.09 1.70 6.50 -51.93 -0.34 1.36 16 49 H 0.05 0.93 7.60 -51.93 -0.39 0.53 16 50 H 0.07 1.50 7.22 -51.93 -0.38 1.13 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -34.53 389.37 -9.48 -44.00 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.95 Total: 4.37 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.75 Total: -7.10 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.21 Total: -43.92 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.15 Total: -20.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.59 Total: 17.21 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.53 -9.48 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356900313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.414 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds