Wall clock time and date at job start Sat Apr 11 2020 07:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46996 * 2 1 4 4 C 1.45643 * 117.70903 * 270.02570 * 3 2 1 5 5 C 1.53468 * 110.73984 * 157.95649 * 4 3 2 6 6 N 1.47265 * 107.93183 * 46.91245 * 5 4 3 7 7 C 1.34777 * 121.34973 * 118.51319 * 6 5 4 8 8 O 1.21285 * 119.99720 * 183.88760 * 7 6 5 9 9 C 1.50698 * 120.00119 * 3.89292 * 7 6 5 10 10 C 1.53005 * 109.46835 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46929 * 305.79628 * 10 9 7 12 12 C 1.50696 * 109.47224 * 65.80112 * 10 9 7 13 13 H 1.07996 * 120.00125 * 35.08454 * 12 10 9 14 14 C 1.37879 * 119.99927 * 214.80647 * 12 10 9 15 15 N 1.31516 * 120.00046 * 177.51597 * 14 12 10 16 16 Si 1.86801 * 119.99818 * 357.51075 * 14 12 10 17 17 H 1.48504 * 109.47089 * 94.53124 * 16 14 12 18 18 H 1.48499 * 109.46810 * 214.52784 * 16 14 12 19 19 H 1.48496 * 109.47522 * 334.52881 * 16 14 12 20 20 C 1.50705 * 109.46940 * 185.79906 * 10 9 7 21 21 C 1.38237 * 120.00238 * 300.32006 * 20 10 9 22 22 C 1.38233 * 119.99965 * 179.74301 * 21 20 10 23 23 C 1.38234 * 120.00004 * 0.55066 * 22 21 20 24 24 C 1.38241 * 120.00059 * 359.70125 * 23 22 21 25 25 C 1.38234 * 119.99701 * 0.02562 * 24 23 22 26 26 C 1.47049 * 117.29252 * 298.23587 * 6 5 4 27 27 H 1.08995 * 109.56549 * 283.16658 * 26 6 5 28 28 C 1.53000 * 109.56369 * 162.93293 * 26 6 5 29 29 C 1.33384 * 117.70020 * 89.99913 * 3 2 1 30 30 O 1.21284 * 118.49149 * 4.32427 * 29 3 2 31 31 H 1.08994 * 109.47469 * 59.99477 * 1 2 3 32 32 H 1.08999 * 109.47067 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47357 * 299.99464 * 1 2 3 34 34 H 1.08998 * 109.47080 * 240.00816 * 2 1 3 35 35 H 1.08998 * 109.47112 * 119.99875 * 2 1 3 36 36 H 1.08999 * 109.21664 * 278.41242 * 4 3 2 37 37 H 1.09001 * 109.21688 * 37.74252 * 4 3 2 38 38 H 1.09001 * 109.84680 * 287.31145 * 5 4 3 39 39 H 1.09006 * 109.83611 * 166.50482 * 5 4 3 40 40 H 1.09000 * 109.47652 * 60.00157 * 9 7 6 41 41 H 1.08999 * 109.46833 * 299.99364 * 9 7 6 42 42 H 0.96997 * 119.99870 * 180.02562 * 15 14 12 43 43 H 1.07999 * 119.99830 * 359.97438 * 21 20 10 44 44 H 1.07997 * 119.99754 * 180.27249 * 22 21 20 45 45 H 1.07997 * 120.00090 * 179.72665 * 23 22 21 46 46 H 1.07995 * 119.99841 * 180.02562 * 24 23 22 47 47 H 1.08005 * 119.99821 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.47510 * 69.26090 * 28 26 6 49 49 H 1.08998 * 109.47006 * 189.26191 * 28 26 6 50 50 H 1.08999 * 109.47153 * 309.25725 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2435 2.0199 -1.2894 5 6 2.2125 3.5481 -1.1517 6 7 3.0454 3.9161 0.0057 7 6 4.1378 4.6927 -0.1352 8 8 4.8458 4.9228 0.8223 9 6 4.4795 5.2753 -1.4824 10 6 5.7568 6.1098 -1.3679 11 1 5.6363 6.8521 -0.5790 12 6 6.9179 5.2082 -1.0364 13 1 6.9587 4.2086 -1.4431 14 6 7.9310 5.6615 -0.2183 15 7 8.9195 4.8587 0.1107 16 14 7.8997 7.4158 0.4226 17 1 7.2700 7.4403 1.7674 18 1 9.2884 7.9332 0.5168 19 1 7.1157 8.2684 -0.5066 20 6 6.0204 6.8070 -2.6778 21 6 6.2010 6.0665 -3.8310 22 6 6.4374 6.7063 -5.0333 23 6 6.5045 8.0862 -5.0805 24 6 6.3291 8.8266 -3.9263 25 6 6.0871 8.1870 -2.7250 26 6 2.6331 3.4069 1.3221 27 1 1.7901 3.9907 1.6917 28 6 3.8020 3.5172 2.3031 29 6 2.2249 1.9658 1.1810 30 8 2.0767 1.3053 2.1873 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8901 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2144 1.7122 -1.6775 37 1 1.4646 1.7080 -1.9852 38 1 1.1883 3.8844 -0.9898 39 1 2.6131 4.0091 -2.0547 40 1 3.6605 5.9089 -1.8227 41 1 4.6362 4.4682 -2.1980 42 1 9.6320 5.1775 0.6865 43 1 6.1536 4.9882 -3.7932 44 1 6.5741 6.1278 -5.9350 45 1 6.6936 8.5858 -6.0190 46 1 6.3812 9.9046 -3.9633 47 1 5.9504 8.7654 -1.8232 48 1 3.9944 4.5674 2.5225 49 1 3.5528 2.9931 3.2258 50 1 4.6917 3.0697 1.8601 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356900313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:15 Heat of formation + Delta-G solvation = -43.553847 kcal Electronic energy + Delta-G solvation = -31427.029755 eV Core-core repulsion = 27419.031728 eV Total energy + Delta-G solvation = -4007.998027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08106 -40.55501 -39.76918 -37.64635 -36.51600 -35.77624 -33.83510 -32.83021 -32.03191 -31.56261 -30.20539 -29.31929 -27.77940 -26.35087 -24.39096 -24.26917 -23.48086 -23.22310 -21.58515 -20.57112 -19.35913 -18.99249 -18.52800 -18.09754 -17.45975 -16.83949 -16.66506 -16.57664 -16.40857 -16.03949 -15.76344 -15.35908 -15.04986 -14.84147 -14.66653 -14.63215 -14.25223 -14.08185 -13.99215 -13.78591 -13.57319 -13.37912 -13.28265 -13.22495 -13.08124 -12.89101 -12.80874 -12.69507 -12.49737 -12.43011 -12.07093 -11.91292 -11.85288 -11.72617 -11.38827 -11.28849 -10.98849 -10.60972 -10.03090 -9.83889 -9.56329 -9.55565 -9.24273 -8.19337 -6.15923 0.73164 0.77957 1.34449 1.39387 1.41068 1.43803 1.74665 1.86927 2.08156 2.44123 3.12415 3.28302 3.33702 3.65320 3.88174 4.03131 4.07824 4.15555 4.15957 4.19943 4.29510 4.34285 4.36283 4.41578 4.49914 4.52382 4.53224 4.61939 4.67766 4.69567 4.81728 4.85351 4.90091 4.91258 4.96151 5.02560 5.09568 5.20160 5.26053 5.29186 5.41188 5.43836 5.45379 5.53938 5.72517 5.82349 5.87352 6.06241 6.28735 6.35625 6.40246 6.49954 6.84267 6.97999 7.46795 7.48956 8.97502 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012858 B = 0.003660 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.126138 B = 7647.426562 C = 8969.819703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.094 3.906 3 N -0.597 5.597 4 C 0.092 3.908 5 C 0.089 3.911 6 N -0.625 5.625 7 C 0.515 3.485 8 O -0.542 6.542 9 C -0.108 4.108 10 C 0.058 3.942 11 H 0.032 0.968 12 C -0.460 4.460 13 H 0.034 0.966 14 C 0.023 3.977 15 N -0.956 5.956 16 Si 0.912 3.088 17 H -0.294 1.294 18 H -0.303 1.303 19 H -0.211 1.211 20 C -0.060 4.060 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.154 4.154 26 C 0.141 3.859 27 H 0.118 0.882 28 C -0.117 4.117 29 C 0.509 3.491 30 O -0.582 6.582 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.255 0.745 43 H 0.115 0.885 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.136 0.864 47 H 0.109 0.891 48 H 0.075 0.925 49 H 0.054 0.946 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.105 -1.305 -12.027 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.028 4.028 3 N -0.329 5.329 4 C -0.031 4.031 5 C -0.033 4.033 6 N -0.364 5.364 7 C 0.305 3.695 8 O -0.417 6.417 9 C -0.147 4.147 10 C 0.038 3.962 11 H 0.050 0.950 12 C -0.497 4.497 13 H 0.052 0.948 14 C -0.173 4.173 15 N -0.598 5.598 16 Si 0.739 3.261 17 H -0.221 1.221 18 H -0.230 1.230 19 H -0.134 1.134 20 C -0.060 4.060 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.160 4.160 24 C -0.144 4.144 25 C -0.172 4.172 26 C 0.034 3.966 27 H 0.135 0.865 28 C -0.175 4.175 29 C 0.296 3.704 30 O -0.462 6.462 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.124 0.876 39 H 0.148 0.852 40 H 0.130 0.870 41 H 0.119 0.881 42 H 0.064 0.936 43 H 0.133 0.867 44 H 0.157 0.843 45 H 0.161 0.839 46 H 0.153 0.847 47 H 0.127 0.873 48 H 0.094 0.906 49 H 0.073 0.927 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.618 -1.501 -10.942 22.513 hybrid contribution 1.068 0.282 1.316 1.718 sum -18.551 -1.219 -9.626 20.935 Atomic orbital electron populations 1.22012 0.93973 1.03228 1.02042 1.21690 0.95838 0.81730 1.03517 1.47411 1.64158 1.15273 1.06010 1.22194 1.03900 0.93038 0.83936 1.22549 0.97000 0.93913 0.89790 1.48457 1.27983 1.52084 1.07862 1.21186 0.78649 0.77680 0.91958 1.90784 1.49319 1.59732 1.41893 1.21644 0.98991 1.00832 0.93258 1.18012 0.92977 0.94218 0.90973 0.94967 1.20804 1.03958 0.98438 1.26540 0.94822 1.25612 0.95260 1.00304 0.96139 1.70042 1.13247 1.37680 1.38805 0.86327 0.76724 0.83447 0.79572 1.22098 1.23028 1.13367 1.20458 0.96333 0.93447 0.95796 1.21011 1.00501 0.99773 0.92369 1.21388 0.99746 0.95194 0.97842 1.21319 1.01782 0.94132 0.98749 1.21316 1.00125 1.00509 0.92490 1.21314 1.03175 0.94433 0.98276 1.21204 0.99287 0.90426 0.85638 0.86467 1.21813 0.95370 1.03165 0.97146 1.20493 0.76467 0.89830 0.83588 1.90674 1.54152 1.64155 1.37267 0.90428 0.90061 0.94613 0.87774 0.92316 0.91600 0.84979 0.87590 0.85193 0.87039 0.88149 0.93597 0.86715 0.84253 0.83900 0.84661 0.87276 0.90629 0.92704 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.23 71.98 0.74 -1.38 16 2 C 0.09 1.71 5.92 86.38 0.51 2.22 16 3 N -0.60 -13.00 2.81 -825.45 -2.32 -15.31 16 4 C 0.09 1.31 6.51 86.70 0.56 1.88 16 5 C 0.09 1.34 6.48 86.39 0.56 1.90 16 6 N -0.63 -17.11 2.97 -798.30 -2.37 -19.48 16 7 C 0.52 18.76 7.31 87.66 0.64 19.40 16 8 O -0.54 -25.93 10.89 -3.05 -0.03 -25.96 16 9 C -0.11 -3.46 3.26 29.85 0.10 -3.36 16 10 C 0.06 2.45 1.20 -12.28 -0.01 2.43 16 11 H 0.03 1.48 4.99 -2.39 -0.01 1.47 16 12 C -0.46 -25.07 7.13 25.60 0.18 -24.89 16 13 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 14 C 0.02 1.36 5.47 84.65 0.46 1.83 16 15 N -0.96 -62.57 13.96 21.45 0.30 -62.27 16 16 Si 0.91 46.81 26.98 68.60 1.85 48.66 16 17 H -0.29 -15.74 7.11 99.48 0.71 -15.03 16 18 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 19 H -0.21 -9.37 3.89 99.48 0.39 -8.98 16 20 C -0.06 -2.25 4.63 -19.86 -0.09 -2.34 16 21 C -0.12 -3.98 8.88 22.27 0.20 -3.78 16 22 C -0.12 -3.42 10.05 22.27 0.22 -3.20 16 23 C -0.14 -3.67 10.05 22.27 0.22 -3.44 16 24 C -0.13 -3.63 10.05 22.27 0.22 -3.40 16 25 C -0.15 -5.38 8.68 22.27 0.19 -5.19 16 26 C 0.14 4.22 3.67 44.06 0.16 4.38 16 27 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 28 C -0.12 -4.48 7.58 71.98 0.55 -3.93 16 29 C 0.51 15.19 7.09 87.79 0.62 15.81 16 30 O -0.58 -21.34 15.41 -3.04 -0.05 -21.39 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.10 1.31 8.01 -2.39 -0.02 1.29 16 35 H 0.06 1.42 7.10 -2.39 -0.02 1.41 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.13 0.75 8.07 -2.39 -0.02 0.74 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.13 1.45 6.04 -2.38 -0.01 1.43 16 40 H 0.11 2.68 7.98 -2.39 -0.02 2.66 16 41 H 0.10 2.90 7.16 -2.39 -0.02 2.88 16 42 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 43 H 0.11 3.82 7.63 -2.91 -0.02 3.80 16 44 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 45 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 46 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 47 H 0.11 3.85 6.38 -2.91 -0.02 3.83 16 48 H 0.07 3.08 6.50 -2.39 -0.02 3.07 16 49 H 0.05 2.02 7.60 -2.39 -0.02 2.00 16 50 H 0.03 1.42 7.22 -2.39 -0.02 1.40 16 Total: -1.00 -84.58 389.37 4.03 -80.55 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.61 Total: 20.28 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 6.04 Total: -5.07 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -4.39 Total: -97.07 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.08 Total: -47.35 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.85 Total: 48.66 kcal Total: -84.58 4.03 -80.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356900313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.995 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds