Wall clock time and date at job start Sat Apr 11 2020 07:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47825 * 2 1 4 4 C 1.45647 * 117.70564 * 89.99327 * 3 2 1 5 5 C 1.52989 * 110.77544 * 158.10095 * 4 3 2 6 6 N 1.47270 * 108.18540 * 46.72955 * 5 4 3 7 7 C 1.34780 * 121.35528 * 118.47172 * 6 5 4 8 8 O 1.21277 * 120.00135 * 180.02562 * 7 6 5 9 9 C 1.50706 * 119.99775 * 0.02562 * 7 6 5 10 10 C 1.52994 * 109.46797 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47491 * 304.99756 * 10 9 7 12 12 C 1.50698 * 109.47433 * 65.00446 * 10 9 7 13 13 H 1.08000 * 119.99956 * 234.67571 * 12 10 9 14 14 C 1.37876 * 119.99915 * 54.67207 * 12 10 9 15 15 N 1.31510 * 120.00346 * 5.05046 * 14 12 10 16 16 Si 1.86808 * 119.99823 * 185.04470 * 14 12 10 17 17 H 1.48499 * 109.46682 * 90.00329 * 16 14 12 18 18 H 1.48496 * 109.46911 * 209.99969 * 16 14 12 19 19 H 1.48502 * 109.46984 * 330.00307 * 16 14 12 20 20 C 1.50702 * 109.46781 * 185.00397 * 10 9 7 21 21 C 1.38235 * 119.99980 * 151.42326 * 20 10 9 22 22 C 1.38231 * 119.99786 * 180.34468 * 21 20 10 23 23 C 1.38238 * 120.00381 * 359.88179 * 22 21 20 24 24 C 1.38227 * 119.99663 * 0.09233 * 23 22 21 25 25 C 1.38235 * 119.99863 * 331.69474 * 20 10 9 26 26 C 1.47049 * 117.29357 * 298.75293 * 6 5 4 27 27 H 1.08999 * 109.57348 * 162.30984 * 26 6 5 28 28 C 1.53009 * 109.56291 * 282.65911 * 26 6 5 29 29 C 1.33375 * 117.70742 * 269.98422 * 3 2 1 30 30 O 1.21283 * 118.48804 * 4.31254 * 29 3 2 31 31 H 1.09004 * 109.46846 * 300.00653 * 1 2 3 32 32 H 1.09000 * 109.46970 * 59.99666 * 1 2 3 33 33 H 1.08994 * 109.47399 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47254 * 239.99640 * 2 1 3 35 35 H 1.09008 * 109.46682 * 120.00109 * 2 1 3 36 36 H 1.09009 * 109.21676 * 37.77506 * 4 3 2 37 37 H 1.08997 * 109.22535 * 278.44079 * 4 3 2 38 38 H 1.08994 * 109.72381 * 287.05891 * 5 4 3 39 39 H 1.09001 * 109.72100 * 166.40130 * 5 4 3 40 40 H 1.09003 * 109.46782 * 60.00040 * 9 7 6 41 41 H 1.08997 * 109.46820 * 300.00189 * 9 7 6 42 42 H 0.96997 * 120.00490 * 180.02562 * 15 14 12 43 43 H 1.07995 * 120.00222 * 0.27462 * 21 20 10 44 44 H 1.08005 * 120.00101 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.00079 * 180.11527 * 23 22 21 46 46 H 1.08006 * 120.00080 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00288 * 359.70127 * 25 20 10 48 48 H 1.09003 * 109.46806 * 60.00323 * 28 26 6 49 49 H 1.08996 * 109.46620 * 179.97438 * 28 26 6 50 50 H 1.09000 * 109.47089 * 300.00120 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2441 2.0195 1.2895 5 6 3.2231 3.1873 1.1529 6 7 2.8121 3.9985 -0.0055 7 6 2.4492 5.2889 0.1353 8 8 2.1146 5.9341 -0.8355 9 6 2.4593 5.9299 1.4992 10 6 2.0081 7.3870 1.3811 11 1 2.6342 7.9035 0.6536 12 6 0.5710 7.4330 0.9297 13 1 0.2983 8.0018 0.0532 14 6 -0.3955 6.7487 1.6358 15 7 -0.0819 6.1382 2.7576 16 14 -2.1507 6.6889 0.9990 17 1 -2.3157 5.5089 0.1128 18 1 -3.0895 6.5827 2.1446 19 1 -2.4419 7.9276 0.2334 20 6 2.1352 8.0625 2.7223 21 6 2.3691 9.4231 2.7916 22 6 2.4928 10.0414 4.0217 23 6 2.3801 9.2995 5.1827 24 6 2.1457 7.9390 5.1134 25 6 2.0235 7.3204 3.8832 26 6 2.8076 3.3417 -1.3211 27 1 2.2044 3.9237 -2.0178 28 6 4.2411 3.2356 -1.8456 29 6 2.2256 1.9656 -1.1808 30 8 1.9262 1.3586 -2.1872 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 2.6540 1.2875 1.9855 37 1 1.2954 2.3902 1.6774 38 1 4.2316 2.8053 0.9951 39 1 3.1971 3.7966 2.0564 40 1 3.4682 5.8937 1.9102 41 1 1.7788 5.3915 2.1587 42 1 -0.7618 5.6565 3.2541 43 1 2.4564 10.0029 1.8846 44 1 2.6751 11.1045 4.0759 45 1 2.4749 9.7829 6.1438 46 1 2.0581 7.3592 6.0204 47 1 1.8403 6.2574 3.8292 48 1 4.8402 2.6486 -1.1495 49 1 4.2360 2.7482 -2.8205 50 1 4.6682 4.2340 -1.9403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356900314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:18 Heat of formation + Delta-G solvation = -32.045863 kcal Electronic energy + Delta-G solvation = -31803.171339 eV Core-core repulsion = 27795.672335 eV Total energy + Delta-G solvation = -4007.499003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80202 -38.95984 -38.06563 -36.38419 -35.35844 -34.26148 -31.77855 -31.15995 -30.85794 -29.84903 -28.57437 -28.20378 -26.01990 -24.78591 -23.77421 -22.88091 -22.22347 -21.44087 -20.17187 -19.12526 -17.67633 -17.31245 -17.04527 -16.35316 -15.99499 -15.77975 -15.39989 -15.07231 -14.73126 -14.34415 -14.05591 -13.87017 -13.80817 -13.75321 -13.33405 -13.22539 -12.78591 -12.66480 -12.44402 -12.25400 -12.18596 -12.13202 -11.94403 -11.67579 -11.66311 -11.50018 -11.41828 -11.26804 -11.00236 -10.91632 -10.83619 -10.48434 -10.22696 -10.00990 -9.89743 -9.35240 -9.23630 -8.86176 -8.79290 -8.49003 -8.28681 -7.84305 -7.48295 -6.03217 -4.12386 2.45859 2.54450 2.63731 2.86411 3.28555 3.30204 3.34589 3.40827 3.53007 4.39904 4.42866 4.72504 4.92311 4.93323 5.05564 5.13214 5.20283 5.21192 5.22926 5.27845 5.37647 5.50466 5.55767 5.67530 5.68502 5.78304 5.83859 5.86198 5.88507 5.96782 6.00632 6.13529 6.17205 6.26612 6.36153 6.40241 6.49942 6.63460 6.71695 6.73359 7.06855 7.10561 7.21300 7.38988 7.41417 7.49667 7.63219 7.87906 7.89374 8.06443 8.13261 8.14650 8.29277 8.84204 9.00447 9.51248 10.90671 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.003866 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.944105 B = 7240.130541 C = 7793.135865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.104 3.896 3 N -0.600 5.600 4 C 0.096 3.904 5 C 0.098 3.902 6 N -0.630 5.630 7 C 0.532 3.468 8 O -0.517 6.517 9 C -0.135 4.135 10 C 0.087 3.913 11 H 0.038 0.962 12 C -0.469 4.469 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.889 3.111 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.027 4.027 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.069 4.069 26 C 0.129 3.871 27 H 0.126 0.874 28 C -0.147 4.147 29 C 0.519 3.481 30 O -0.550 6.550 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.134 0.866 42 H 0.260 0.740 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.139 0.861 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.442 -9.696 2.812 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.333 5.333 4 C -0.028 4.028 5 C -0.026 4.026 6 N -0.369 5.369 7 C 0.323 3.677 8 O -0.389 6.389 9 C -0.175 4.175 10 C 0.068 3.932 11 H 0.056 0.944 12 C -0.507 4.507 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.027 4.027 21 C -0.150 4.150 22 C -0.159 4.159 23 C -0.172 4.172 24 C -0.161 4.161 25 C -0.087 4.087 26 C 0.022 3.978 27 H 0.143 0.857 28 C -0.206 4.206 29 C 0.306 3.694 30 O -0.427 6.427 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.073 0.927 41 H 0.151 0.849 42 H 0.070 0.930 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.157 0.843 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.978 -9.680 1.880 12.684 hybrid contribution -1.372 -0.076 0.026 1.375 sum 6.606 -9.756 1.906 11.935 Atomic orbital electron populations 1.22092 0.95777 1.01946 1.02738 1.21507 0.94861 0.82566 1.02885 1.47296 1.65280 1.14577 1.06130 1.21879 1.00983 0.95515 0.84394 1.21966 0.96950 0.92335 0.91322 1.48563 1.70122 1.12032 1.06137 1.21269 0.74229 0.79352 0.92878 1.90631 1.45296 1.61582 1.41435 1.21971 1.00812 1.01679 0.93052 1.17646 0.96677 0.89299 0.89575 0.94372 1.20991 0.90998 1.28784 1.09900 0.92258 1.24852 0.98641 0.95803 0.94527 1.69655 1.33387 1.35510 1.14403 0.86609 0.84672 0.78617 0.78320 1.20909 1.21397 1.19951 1.20309 0.92540 0.92978 0.96900 1.20900 1.02377 0.95136 0.96548 1.20805 1.03680 0.98375 0.93088 1.20770 1.04746 0.94685 0.96999 1.21043 1.02797 0.94539 0.97747 1.21337 0.94992 1.01723 0.90647 1.21078 0.98620 0.89809 0.88254 0.85679 1.21967 0.94071 1.03179 1.01345 1.20304 0.77735 0.88437 0.82888 1.90693 1.51821 1.64385 1.35815 0.92435 0.92117 0.91807 0.89856 0.90642 0.89734 0.90607 0.90971 0.87029 0.92697 0.84873 0.92975 0.87658 0.88096 0.88307 0.88093 0.84314 0.92442 0.90963 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.23 37.16 0.38 -1.55 16 2 C 0.10 1.16 5.88 -4.04 -0.02 1.13 16 3 N -0.60 -7.87 2.81 -175.04 -0.49 -8.36 16 4 C 0.10 1.06 6.57 -4.51 -0.03 1.03 16 5 C 0.10 1.14 6.32 -3.63 -0.02 1.12 16 6 N -0.63 -10.03 2.63 -166.74 -0.44 -10.47 16 7 C 0.53 10.66 7.47 -10.98 -0.08 10.57 16 8 O -0.52 -12.35 14.54 5.56 0.08 -12.27 16 9 C -0.14 -2.66 2.45 -27.88 -0.07 -2.73 16 10 C 0.09 1.99 1.97 -92.93 -0.18 1.81 16 11 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 12 C -0.47 -12.20 7.27 -34.44 -0.25 -12.45 16 13 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 14 C 0.06 1.56 5.12 -17.82 -0.09 1.47 16 15 N -0.89 -21.53 7.98 55.43 0.44 -21.09 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 20 C -0.03 -0.58 4.69 -104.62 -0.49 -1.07 16 21 C -0.13 -2.71 9.71 -39.58 -0.38 -3.09 16 22 C -0.14 -2.62 10.05 -39.58 -0.40 -3.02 16 23 C -0.15 -2.77 10.05 -39.59 -0.40 -3.17 16 24 C -0.14 -2.69 10.05 -39.59 -0.40 -3.09 16 25 C -0.07 -1.41 7.46 -39.58 -0.30 -1.71 16 26 C 0.13 2.05 3.05 -69.08 -0.21 1.84 16 27 H 0.13 2.32 7.23 -51.93 -0.38 1.95 16 28 C -0.15 -1.87 9.37 37.16 0.35 -1.53 16 29 C 0.52 8.26 6.80 -11.91 -0.08 8.18 16 30 O -0.55 -10.13 16.25 5.56 0.09 -10.04 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.00 7.23 -51.93 -0.38 0.62 16 35 H 0.08 0.61 7.81 -51.92 -0.41 0.21 16 36 H 0.08 0.65 7.85 -51.92 -0.41 0.24 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.68 7.53 -51.93 -0.39 0.29 16 39 H 0.11 1.24 6.03 -51.93 -0.31 0.92 16 40 H 0.05 0.94 7.83 -51.93 -0.41 0.53 16 41 H 0.13 2.75 4.44 -51.93 -0.23 2.52 16 42 H 0.26 6.20 8.31 -40.82 -0.34 5.86 16 43 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 44 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 45 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 47 H 0.14 2.87 5.17 -52.49 -0.27 2.60 16 48 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -30.46 393.31 -9.84 -40.29 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.75 Total: 5.97 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.68 Total: -6.25 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.49 Total: -39.91 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.46 -9.84 -40.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356900314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.249 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds