Wall clock time and date at job start Sat Apr 11 2020 07:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47147 * 2 1 4 4 C 1.46496 * 119.99878 * 269.99923 * 3 2 1 5 5 C 1.50699 * 109.47318 * 269.99810 * 4 3 2 6 6 H 1.08000 * 119.99734 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00041 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00218 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99906 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47280 * 60.00111 * 9 7 5 11 11 H 1.48501 * 109.47059 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47241 * 300.00133 * 9 7 5 13 13 C 1.34778 * 119.99545 * 89.99940 * 3 2 1 14 14 O 1.21287 * 119.99322 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00208 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.46815 * 179.97438 * 15 13 3 17 17 C 1.46447 * 110.99996 * 293.95719 * 16 15 13 18 18 C 1.50477 * 111.40973 * 291.49978 * 17 16 15 19 19 C 1.38651 * 119.06225 * 158.84859 * 18 17 16 20 20 C 1.37973 * 120.33890 * 179.60978 * 19 18 17 21 21 C 1.38763 * 120.00580 * 0.02562 * 20 19 18 22 22 O 1.35905 * 120.15789 * 180.13135 * 21 20 19 23 23 C 1.38688 * 119.68646 * 0.17516 * 21 20 19 24 24 C 1.38149 * 120.03203 * 359.91416 * 23 21 20 25 25 C 1.50779 * 119.71992 * 179.83510 * 24 23 21 26 26 C 1.52748 * 117.92034 * 312.73805 * 25 24 23 27 27 C 1.52666 * 118.05149 * 21.89099 * 25 24 23 28 28 C 1.47343 * 111.00069 * 169.95078 * 16 15 13 29 29 H 1.09001 * 109.47420 * 299.99668 * 1 2 3 30 30 H 1.09002 * 109.47187 * 60.00367 * 1 2 3 31 31 H 1.09000 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47420 * 240.00331 * 2 1 3 33 33 H 1.08995 * 109.47202 * 120.00002 * 2 1 3 34 34 H 1.08996 * 109.47038 * 30.00056 * 4 3 2 35 35 H 1.08999 * 109.47057 * 149.99963 * 4 3 2 36 36 H 0.96998 * 120.00260 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.46889 * 60.00392 * 15 13 3 38 38 H 1.08994 * 109.47780 * 300.00219 * 15 13 3 39 39 H 1.09002 * 109.08940 * 171.00530 * 17 16 15 40 40 H 1.08997 * 109.09548 * 51.99478 * 17 16 15 41 41 H 1.07997 * 119.82750 * 359.62233 * 19 18 17 42 42 H 1.07993 * 119.99607 * 180.02562 * 20 19 18 43 43 H 0.96695 * 114.00239 * 89.99750 * 22 21 20 44 44 H 1.07994 * 119.98473 * 179.97438 * 23 21 20 45 45 H 1.08994 * 117.50787 * 0.56714 * 26 25 24 46 46 H 1.09000 * 117.50449 * 215.49245 * 26 25 24 47 47 H 1.08999 * 117.50525 * 144.71073 * 27 25 24 48 48 H 1.09001 * 117.53093 * 359.64516 * 27 25 24 49 49 H 1.09005 * 109.82069 * 297.47035 * 28 16 15 50 50 H 1.08993 * 109.82883 * 176.54202 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1493 2.3905 -2.8774 8 7 3.3496 3.1274 -3.6171 9 14 5.9138 2.0976 -3.4163 10 1 6.1417 0.6410 -3.5942 11 1 6.1616 2.7985 -4.7018 12 1 6.8409 2.6209 -2.3810 13 6 2.2429 2.0165 1.1673 14 8 2.6467 3.1602 1.1672 15 6 1.9911 1.3063 2.4723 16 7 2.3101 2.2061 3.5889 17 6 3.7426 2.5079 3.6270 18 6 4.5497 1.2946 4.0025 19 6 5.8949 1.2510 3.6693 20 6 6.6616 0.1550 4.0079 21 6 6.0870 -0.9113 4.6849 22 8 6.8400 -1.9912 5.0223 23 6 4.7406 -0.8702 5.0149 24 6 3.9778 0.2293 4.6715 25 6 2.5138 0.2650 5.0304 26 6 1.6710 -0.9706 4.7203 27 6 2.0316 -0.6311 6.1685 28 6 1.8545 1.6394 4.8704 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6877 -2.0283 35 1 2.0955 3.1410 -1.1384 36 1 3.6756 3.5178 -4.4430 37 1 2.6210 0.4186 2.5302 38 1 0.9431 1.0125 2.5299 39 1 3.9216 3.2956 4.3588 40 1 4.0598 2.8568 2.6444 41 1 6.3448 2.0793 3.1421 42 1 7.7089 0.1271 3.7459 43 1 7.2591 -1.9226 5.8910 44 1 4.2885 -1.6975 5.5415 45 1 2.1749 -1.8217 4.2623 46 1 0.6392 -0.8106 4.4076 47 1 1.2368 -0.2481 6.8086 48 1 2.7722 -1.2595 6.6634 49 1 0.7700 1.5300 4.8615 50 1 2.1543 2.2917 5.6905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361560315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:31 Heat of formation + Delta-G solvation = -34.658645 kcal Electronic energy + Delta-G solvation = -31670.080383 eV Core-core repulsion = 27662.468081 eV Total energy + Delta-G solvation = -4007.612302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.06670 -40.56950 -39.40902 -37.40145 -37.07659 -36.46098 -34.91155 -31.80347 -31.65722 -31.47292 -30.06860 -28.56171 -27.83859 -25.15107 -24.35854 -24.27645 -23.67874 -23.23487 -22.25731 -20.56122 -19.73380 -18.80533 -18.63025 -18.07129 -17.35789 -17.24532 -17.03244 -16.61806 -16.38778 -15.93761 -15.89870 -15.29631 -15.15556 -15.08320 -14.68220 -14.64804 -14.48561 -14.23439 -13.96677 -13.56142 -13.42999 -13.30850 -13.20029 -13.11975 -13.06112 -12.72086 -12.66587 -12.62914 -12.47456 -12.36619 -12.19828 -12.14274 -11.85835 -11.72889 -11.65190 -11.28431 -11.13734 -10.64971 -10.49175 -9.74856 -9.40879 -9.31025 -9.27465 -8.22584 -6.37221 0.15322 0.26368 1.33362 1.37208 1.44683 1.88839 2.23953 2.40028 2.44227 2.90626 3.06332 3.17534 3.19790 3.54812 3.63212 3.76020 3.79833 3.85906 4.02024 4.08693 4.12055 4.22641 4.32932 4.39791 4.43427 4.45937 4.49074 4.64146 4.68586 4.75997 4.80778 4.84186 4.92426 4.94055 4.95991 5.00209 5.06256 5.07256 5.11415 5.22764 5.29410 5.31607 5.37589 5.39510 5.52687 5.58461 5.81155 5.86797 5.95938 6.07211 6.07734 6.70451 6.81332 6.84921 7.28908 7.55687 8.84020 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010243 B = 0.004062 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.895622 B = 6891.014815 C = 8311.137130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.266 3.734 5 C -0.540 4.540 6 H 0.047 0.953 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.060 3.940 16 N -0.521 5.521 17 C 0.092 3.908 18 C -0.130 4.130 19 C -0.109 4.109 20 C -0.157 4.157 21 C 0.103 3.897 22 O -0.506 6.506 23 C -0.145 4.145 24 C -0.025 4.025 25 C -0.148 4.148 26 C -0.158 4.158 27 C -0.139 4.139 28 C 0.095 3.905 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.020 0.980 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.136 0.864 43 H 0.410 0.590 44 H 0.147 0.853 45 H 0.092 0.908 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -12.723 23.501 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.065 0.935 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.786 3.214 10 H -0.187 1.187 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.070 4.070 16 N -0.241 5.241 17 C -0.036 4.036 18 C -0.132 4.132 19 C -0.127 4.127 20 C -0.176 4.176 21 C 0.059 3.941 22 O -0.319 6.319 23 C -0.163 4.163 24 C -0.025 4.025 25 C -0.149 4.149 26 C -0.195 4.195 27 C -0.176 4.176 28 C -0.032 4.032 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.038 0.962 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.138 0.862 42 H 0.154 0.846 43 H 0.269 0.731 44 H 0.165 0.835 45 H 0.111 0.889 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.120 0.880 49 H 0.124 0.876 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.790 -11.775 22.686 25.712 hybrid contribution 1.939 -0.112 -0.545 2.018 sum -0.850 -11.887 22.141 25.144 Atomic orbital electron populations 1.22138 0.94112 1.03555 1.01861 1.21692 0.95656 0.81547 1.03285 1.48267 1.64285 1.14905 1.06246 1.18639 0.95031 0.91483 0.80401 1.21632 0.97904 1.31898 1.06455 0.93459 1.25790 1.02116 0.94491 0.96411 1.70037 1.37704 1.34101 1.14800 0.85558 0.79390 0.78938 0.77479 1.18702 1.20053 1.20441 1.21210 0.77351 0.86694 0.86319 1.90597 1.47201 1.20279 1.87737 1.21880 1.03743 0.93839 0.87584 1.62035 1.15012 1.43817 1.03286 1.20972 0.86073 0.94201 1.02358 1.20568 0.95008 0.97871 0.99755 1.21085 0.93779 0.98595 0.99289 1.21498 1.01239 0.93311 1.01542 1.18440 0.90512 0.86801 0.98396 1.84781 1.66750 1.38241 1.42153 1.21309 0.93430 0.98853 1.02701 1.18766 0.94240 0.92863 0.96662 1.20876 0.90849 0.95161 1.08057 1.23252 1.00590 0.96311 0.99332 1.23106 1.03273 1.00428 0.90834 1.22113 1.00320 0.90794 0.89993 0.91861 0.94189 0.88551 0.91332 0.89169 0.96157 0.98553 0.92393 0.91375 0.85860 0.89000 0.91328 0.86198 0.84621 0.73102 0.83549 0.88915 0.86532 0.86228 0.87997 0.87631 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 2 C 0.10 3.22 5.93 86.38 0.51 3.74 16 3 N -0.60 -26.55 2.46 -826.17 -2.03 -28.58 16 4 C 0.27 14.80 5.16 85.63 0.44 15.24 16 5 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.65 5.46 84.65 0.46 1.11 16 8 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 9 Si 0.96 46.18 29.54 68.60 2.03 48.21 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 C 0.50 21.41 7.32 87.66 0.64 22.05 16 14 O -0.58 -30.69 13.94 -3.05 -0.04 -30.74 16 15 C 0.06 1.81 3.06 85.55 0.26 2.07 16 16 N -0.52 -15.06 4.70 -905.28 -4.26 -19.31 16 17 C 0.09 2.94 5.20 85.57 0.44 3.38 16 18 C -0.13 -3.70 5.16 -19.85 -0.10 -3.80 16 19 C -0.11 -3.14 9.66 22.31 0.22 -2.92 16 20 C -0.16 -3.99 9.98 22.33 0.22 -3.77 16 21 C 0.10 2.34 6.71 22.50 0.15 2.49 16 22 O -0.51 -9.52 13.51 -92.48 -1.25 -10.77 16 23 C -0.14 -3.05 8.91 22.36 0.20 -2.85 16 24 C -0.02 -0.58 4.89 -19.87 -0.10 -0.67 16 25 C -0.15 -2.57 1.36 -53.01 -0.07 -2.65 16 26 C -0.16 -2.09 9.02 30.53 0.28 -1.82 16 27 C -0.14 -1.55 9.56 30.50 0.29 -1.26 16 28 C 0.09 1.83 5.73 86.31 0.49 2.32 16 29 H 0.06 1.43 7.22 -2.39 -0.02 1.41 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 33 H 0.09 2.37 6.44 -2.39 -0.02 2.35 16 34 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 35 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.07 2.02 5.22 -2.39 -0.01 2.00 16 38 H 0.12 2.94 7.12 -2.39 -0.02 2.92 16 39 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.07 2.83 5.72 -2.39 -0.01 2.82 16 41 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 42 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.41 3.33 9.06 -74.06 -0.67 2.66 16 44 H 0.15 2.40 6.47 -2.91 -0.02 2.38 16 45 H 0.09 1.34 8.04 -2.39 -0.02 1.32 16 46 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.10 1.04 6.68 -2.39 -0.02 1.03 16 49 H 0.11 1.58 8.04 -2.38 -0.02 1.56 16 50 H 0.09 1.64 8.12 -2.39 -0.02 1.63 16 Total: -1.00 -79.81 396.13 0.34 -79.47 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.29 Total: 21.08 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.32 Total: -2.43 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -6.00 Total: -104.82 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.29 Total: -41.51 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -79.81 0.34 -79.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361560315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.812 kcal (2) G-P(sol) polarization free energy of solvation -79.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds