Wall clock time and date at job start Sat Apr 11 2020 07:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46913 * 2 1 4 4 C 1.46694 * 119.81290 * 270.02367 * 3 2 1 5 5 C 1.53033 * 109.07108 * 251.26297 * 4 3 2 6 6 C 1.52449 * 110.17223 * 271.32349 * 5 4 3 7 7 N 1.46073 * 111.51027 * 62.66127 * 6 5 4 8 8 C 1.34773 * 119.80625 * 117.03238 * 7 6 5 9 9 O 1.21283 * 120.00631 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99871 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.47090 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47354 * 55.00312 * 11 10 8 13 13 C 1.50696 * 109.47186 * 295.00311 * 11 10 8 14 14 H 1.07998 * 120.00287 * 325.84925 * 13 11 10 15 15 C 1.37874 * 120.00158 * 145.85448 * 13 11 10 16 16 N 1.31516 * 120.00275 * 6.11613 * 15 13 11 17 17 Si 1.86800 * 120.00259 * 186.11370 * 15 13 11 18 18 H 1.48507 * 109.47070 * 89.99666 * 17 15 13 19 19 H 1.48500 * 109.47513 * 209.99850 * 17 15 13 20 20 H 1.48497 * 109.47147 * 330.00131 * 17 15 13 21 21 C 1.50698 * 109.47019 * 175.00208 * 11 10 8 22 22 C 1.38231 * 120.00069 * 63.45855 * 21 11 10 23 23 C 1.38245 * 119.99714 * 179.78847 * 22 21 11 24 24 C 1.38232 * 120.00140 * 0.44092 * 23 22 21 25 25 C 1.38238 * 119.99796 * 359.81310 * 24 23 22 26 26 C 1.38231 * 120.00294 * 359.97438 * 25 24 23 27 27 C 1.46662 * 120.38296 * 297.05171 * 7 6 5 28 28 C 1.34245 * 119.81525 * 89.99944 * 3 2 1 29 29 O 1.21284 * 120.34877 * 2.86916 * 28 3 2 30 30 H 1.09001 * 109.46901 * 299.99941 * 1 2 3 31 31 H 1.08993 * 109.47406 * 60.00431 * 1 2 3 32 32 H 1.09008 * 109.46831 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.46977 * 239.99778 * 2 1 3 34 34 H 1.09003 * 109.46908 * 119.99756 * 2 1 3 35 35 H 1.09005 * 109.54045 * 11.13937 * 4 3 2 36 36 H 1.09002 * 109.54040 * 131.30400 * 4 3 2 37 37 H 1.09003 * 109.35836 * 151.10767 * 5 4 3 38 38 H 1.09006 * 109.35481 * 31.53836 * 5 4 3 39 39 H 1.09001 * 109.07188 * 302.13847 * 6 5 4 40 40 H 1.09002 * 109.07735 * 183.18410 * 6 5 4 41 41 H 1.08994 * 109.47125 * 299.99998 * 10 8 7 42 42 H 1.09003 * 109.47038 * 60.00054 * 10 8 7 43 43 H 0.96999 * 120.00248 * 180.02562 * 16 15 13 44 44 H 1.07999 * 120.00201 * 359.97438 * 22 21 11 45 45 H 1.08003 * 119.99628 * 180.27114 * 23 22 21 46 46 H 1.08000 * 119.99884 * 179.83228 * 24 23 22 47 47 H 1.08003 * 119.99751 * 180.02562 * 25 24 23 48 48 H 1.07995 * 120.00242 * 180.02562 * 26 25 24 49 49 H 1.08999 * 109.60091 * 201.76334 * 27 7 6 50 50 H 1.09003 * 109.59963 * 322.07586 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2609 2.0690 -1.2728 5 6 3.7694 2.2270 -1.4762 6 6 4.2519 3.5274 -0.8435 7 7 4.0394 3.5310 0.6017 8 6 5.0971 3.6012 1.4341 9 8 6.2212 3.6617 0.9827 10 6 4.8829 3.6058 2.9258 11 6 6.2359 3.6910 3.6350 12 1 6.7823 4.5614 3.2718 13 6 7.0317 2.4435 3.3503 14 1 6.5277 1.4947 3.2401 15 6 8.4035 2.5132 3.2306 16 7 9.0292 3.6421 3.4830 17 14 9.3736 1.0041 2.7100 18 1 9.4944 0.9795 1.2301 19 1 10.7282 1.0528 3.3165 20 1 8.6693 -0.2199 3.1695 21 6 6.0171 3.8193 5.1205 22 6 5.4052 2.7960 5.8199 23 6 5.2085 2.9118 7.1834 24 6 5.6155 4.0548 7.8458 25 6 6.2227 5.0803 7.1454 26 6 6.4234 4.9627 5.7828 27 6 2.6820 3.4581 1.1521 28 6 2.2408 2.0106 1.1648 29 8 2.0894 1.4253 2.2162 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8424 1.4817 -2.0902 36 1 1.7898 3.0518 -1.2517 37 1 3.9906 2.2407 -2.5435 38 1 4.2863 1.3864 -1.0132 39 1 3.7076 4.3619 -1.2856 40 1 5.3156 3.6496 -1.0474 41 1 4.2724 4.4653 3.2025 42 1 4.3746 2.6884 3.2227 43 1 9.9942 3.6913 3.3984 44 1 5.0834 1.9047 5.3017 45 1 4.7343 2.1104 7.7305 46 1 5.4593 4.1464 8.9105 47 1 6.5411 5.9732 7.6631 48 1 6.8981 5.7637 5.2358 49 1 2.6782 3.8505 2.1690 50 1 2.0039 4.0441 0.5316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375654964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:54 Heat of formation + Delta-G solvation = -39.561834 kcal Electronic energy + Delta-G solvation = -31491.698296 eV Core-core repulsion = 27483.873376 eV Total energy + Delta-G solvation = -4007.824920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63159 -38.93973 -38.14028 -36.58699 -35.30496 -33.94366 -32.48796 -31.37566 -30.91263 -29.92097 -28.79278 -27.43810 -26.35566 -25.05667 -23.30576 -22.94363 -21.83382 -21.46642 -19.78503 -19.29219 -18.49322 -17.41193 -16.97349 -16.44940 -16.13651 -15.72885 -15.59655 -15.03971 -14.53828 -14.41075 -14.08536 -14.05641 -13.74971 -13.71502 -13.63898 -13.22915 -13.00046 -12.70898 -12.51914 -12.44083 -12.37412 -12.16660 -11.92944 -11.74803 -11.71625 -11.55044 -11.39348 -11.13520 -11.06222 -10.83250 -10.63052 -10.52075 -10.17494 -10.04357 -9.98899 -9.39359 -9.03250 -8.88024 -8.82181 -8.36721 -8.28233 -7.95766 -7.52923 -5.88941 -3.87721 2.37645 2.40448 2.46256 2.87085 3.39935 3.42857 3.46377 3.48523 3.49249 4.39324 4.56151 4.65862 4.70630 4.81655 4.83482 4.95887 5.03328 5.14455 5.17841 5.25314 5.26538 5.42583 5.47570 5.52229 5.58609 5.63408 5.74008 5.77709 5.81622 5.91852 5.96650 6.04403 6.09211 6.14668 6.30089 6.36893 6.39888 6.50030 6.62861 6.75893 6.89117 6.99138 7.12120 7.27804 7.39481 7.52106 7.57912 7.76060 7.92665 8.02850 8.11931 8.15003 8.44877 8.94757 9.12481 9.73905 11.21254 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.004063 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.675500 B = 6889.607984 C = 8108.403895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.611 5.611 4 C 0.113 3.887 5 C -0.160 4.160 6 C 0.108 3.892 7 N -0.623 5.623 8 C 0.519 3.481 9 O -0.485 6.485 10 C -0.124 4.124 11 C 0.081 3.919 12 H 0.071 0.929 13 C -0.490 4.490 14 H 0.049 0.951 15 C 0.079 3.921 16 N -0.882 5.882 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.021 4.021 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.155 4.155 25 C -0.129 4.129 26 C -0.119 4.119 27 C 0.098 3.902 28 C 0.503 3.497 29 O -0.530 6.530 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.258 0.742 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.113 0.887 49 H 0.117 0.883 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.055 -0.104 -8.959 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.016 4.016 3 N -0.346 5.346 4 C -0.010 4.010 5 C -0.199 4.199 6 C -0.015 4.015 7 N -0.363 5.363 8 C 0.308 3.692 9 O -0.355 6.355 10 C -0.164 4.164 11 C 0.062 3.938 12 H 0.089 0.911 13 C -0.527 4.527 14 H 0.067 0.933 15 C -0.124 4.124 16 N -0.519 5.519 17 Si 0.713 3.287 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.021 4.021 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.174 4.174 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.029 4.029 28 C 0.289 3.711 29 O -0.404 6.404 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.131 0.869 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.131 0.869 49 H 0.135 0.865 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.263 -0.294 -8.624 18.410 hybrid contribution 0.593 -1.035 -0.379 1.251 sum -15.669 -1.329 -9.002 18.120 Atomic orbital electron populations 1.22119 0.95910 1.02120 1.02151 1.21450 0.94206 0.82653 1.03301 1.48026 1.66000 1.14246 1.06318 1.21716 0.96097 0.97862 0.85367 1.22360 0.95758 1.00030 1.01757 1.21214 1.03906 0.95978 0.80398 1.47978 1.05283 1.76881 1.06120 1.21102 0.83647 0.74924 0.89546 1.90753 1.22036 1.45241 1.77428 1.21888 1.02232 1.01834 0.90491 1.17834 0.89655 1.00737 0.85582 0.91063 1.20689 0.91341 0.92690 1.48000 0.93257 1.24788 0.97803 0.95452 0.94346 1.69914 1.08543 1.25300 1.48143 0.86722 0.79381 0.83723 0.78879 1.20742 1.21474 1.20147 1.20698 0.91133 0.91232 0.99075 1.20975 0.99799 0.98870 0.93410 1.20976 1.01554 0.97417 0.94974 1.20786 1.02861 0.95147 0.98576 1.20964 1.00558 0.98424 0.94788 1.21069 1.00419 0.98352 0.93880 1.21837 0.85316 0.92669 1.03077 1.21379 0.76376 0.90079 0.83241 1.90734 1.51030 1.67882 1.30763 0.92223 0.92744 0.91708 0.90786 0.89759 0.89759 0.90685 0.89678 0.90553 0.91859 0.88368 0.91610 0.89811 0.93198 0.86877 0.87692 0.87855 0.87700 0.86887 0.86515 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.11 1.07 6.08 -4.04 -0.02 1.04 16 3 N -0.61 -6.77 2.47 -173.39 -0.43 -7.20 16 4 C 0.11 0.89 5.83 -3.92 -0.02 0.86 16 5 C -0.16 -1.56 5.92 -27.00 -0.16 -1.72 16 6 C 0.11 1.31 5.92 -4.55 -0.03 1.28 16 7 N -0.62 -9.33 2.68 -175.23 -0.47 -9.80 16 8 C 0.52 10.48 7.41 -10.98 -0.08 10.40 16 9 O -0.48 -11.97 14.28 5.55 0.08 -11.89 16 10 C -0.12 -2.54 3.37 -27.88 -0.09 -2.64 16 11 C 0.08 1.99 1.67 -92.93 -0.16 1.84 16 12 H 0.07 1.98 6.97 -51.93 -0.36 1.62 16 13 C -0.49 -13.57 6.37 -34.44 -0.22 -13.79 16 14 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 15 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 16 N -0.88 -26.24 12.87 55.43 0.71 -25.53 16 17 Si 0.88 22.77 29.54 -169.99 -5.02 17.75 16 18 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 22 C -0.11 -2.43 8.86 -39.58 -0.35 -2.78 16 23 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 24 C -0.16 -2.84 10.05 -39.58 -0.40 -3.24 16 25 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 26 C -0.12 -2.59 9.67 -39.58 -0.38 -2.97 16 27 C 0.10 1.21 5.37 -4.79 -0.03 1.18 16 28 C 0.50 7.10 7.26 -10.91 -0.08 7.02 16 29 O -0.53 -9.52 16.67 5.55 0.09 -9.43 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.07 0.59 8.02 -51.93 -0.42 0.18 16 34 H 0.08 1.05 7.38 -51.93 -0.38 0.67 16 35 H 0.08 0.48 7.91 -51.93 -0.41 0.07 16 36 H 0.07 0.48 6.72 -51.93 -0.35 0.13 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 39 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.10 1.46 6.85 -51.93 -0.36 1.10 16 41 H 0.07 1.17 7.43 -51.93 -0.39 0.78 16 42 H 0.08 1.75 7.73 -51.93 -0.40 1.35 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.11 2.46 7.76 -52.49 -0.41 2.05 16 45 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 46 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 48 H 0.11 2.46 7.95 -52.49 -0.42 2.04 16 49 H 0.12 1.48 6.15 -51.93 -0.32 1.16 16 50 H 0.09 0.80 7.19 -51.93 -0.37 0.42 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -35.12 401.23 -9.94 -45.06 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.92 Total: 4.04 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -3.03 Total: -9.06 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.19 Total: -42.53 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.17 Total: -21.31 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.12 -9.94 -45.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375654964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.503 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds