Wall clock time and date at job start Sat Apr 11 2020 07:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46913 * 2 1 4 4 C 1.46694 * 119.81290 * 270.02367 * 3 2 1 5 5 C 1.53033 * 109.07108 * 251.26297 * 4 3 2 6 6 C 1.52449 * 110.17223 * 271.32349 * 5 4 3 7 7 N 1.46073 * 111.51027 * 62.66127 * 6 5 4 8 8 C 1.34773 * 119.80625 * 117.03238 * 7 6 5 9 9 O 1.21283 * 120.00631 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99871 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.47090 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47354 * 55.00312 * 11 10 8 13 13 C 1.50696 * 109.47186 * 295.00311 * 11 10 8 14 14 H 1.07998 * 120.00287 * 325.84925 * 13 11 10 15 15 C 1.37874 * 120.00158 * 145.85448 * 13 11 10 16 16 N 1.31516 * 120.00275 * 6.11613 * 15 13 11 17 17 Si 1.86800 * 120.00259 * 186.11370 * 15 13 11 18 18 H 1.48507 * 109.47070 * 89.99666 * 17 15 13 19 19 H 1.48500 * 109.47513 * 209.99850 * 17 15 13 20 20 H 1.48497 * 109.47147 * 330.00131 * 17 15 13 21 21 C 1.50698 * 109.47019 * 175.00208 * 11 10 8 22 22 C 1.38231 * 120.00069 * 63.45855 * 21 11 10 23 23 C 1.38245 * 119.99714 * 179.78847 * 22 21 11 24 24 C 1.38232 * 120.00140 * 0.44092 * 23 22 21 25 25 C 1.38238 * 119.99796 * 359.81310 * 24 23 22 26 26 C 1.38231 * 120.00294 * 359.97438 * 25 24 23 27 27 C 1.46662 * 120.38296 * 297.05171 * 7 6 5 28 28 C 1.34245 * 119.81525 * 89.99944 * 3 2 1 29 29 O 1.21284 * 120.34877 * 2.86916 * 28 3 2 30 30 H 1.09001 * 109.46901 * 299.99941 * 1 2 3 31 31 H 1.08993 * 109.47406 * 60.00431 * 1 2 3 32 32 H 1.09008 * 109.46831 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.46977 * 239.99778 * 2 1 3 34 34 H 1.09003 * 109.46908 * 119.99756 * 2 1 3 35 35 H 1.09005 * 109.54045 * 11.13937 * 4 3 2 36 36 H 1.09002 * 109.54040 * 131.30400 * 4 3 2 37 37 H 1.09003 * 109.35836 * 151.10767 * 5 4 3 38 38 H 1.09006 * 109.35481 * 31.53836 * 5 4 3 39 39 H 1.09001 * 109.07188 * 302.13847 * 6 5 4 40 40 H 1.09002 * 109.07735 * 183.18410 * 6 5 4 41 41 H 1.08994 * 109.47125 * 299.99998 * 10 8 7 42 42 H 1.09003 * 109.47038 * 60.00054 * 10 8 7 43 43 H 0.96999 * 120.00248 * 180.02562 * 16 15 13 44 44 H 1.07999 * 120.00201 * 359.97438 * 22 21 11 45 45 H 1.08003 * 119.99628 * 180.27114 * 23 22 21 46 46 H 1.08000 * 119.99884 * 179.83228 * 24 23 22 47 47 H 1.08003 * 119.99751 * 180.02562 * 25 24 23 48 48 H 1.07995 * 120.00242 * 180.02562 * 26 25 24 49 49 H 1.08999 * 109.60091 * 201.76334 * 27 7 6 50 50 H 1.09003 * 109.59963 * 322.07586 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2609 2.0690 -1.2728 5 6 3.7694 2.2270 -1.4762 6 6 4.2519 3.5274 -0.8435 7 7 4.0394 3.5310 0.6017 8 6 5.0971 3.6012 1.4341 9 8 6.2212 3.6617 0.9827 10 6 4.8829 3.6058 2.9258 11 6 6.2359 3.6910 3.6350 12 1 6.7823 4.5614 3.2718 13 6 7.0317 2.4435 3.3503 14 1 6.5277 1.4947 3.2401 15 6 8.4035 2.5132 3.2306 16 7 9.0292 3.6421 3.4830 17 14 9.3736 1.0041 2.7100 18 1 9.4944 0.9795 1.2301 19 1 10.7282 1.0528 3.3165 20 1 8.6693 -0.2199 3.1695 21 6 6.0171 3.8193 5.1205 22 6 5.4052 2.7960 5.8199 23 6 5.2085 2.9118 7.1834 24 6 5.6155 4.0548 7.8458 25 6 6.2227 5.0803 7.1454 26 6 6.4234 4.9627 5.7828 27 6 2.6820 3.4581 1.1521 28 6 2.2408 2.0106 1.1648 29 8 2.0894 1.4253 2.2162 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8424 1.4817 -2.0902 36 1 1.7898 3.0518 -1.2517 37 1 3.9906 2.2407 -2.5435 38 1 4.2863 1.3864 -1.0132 39 1 3.7076 4.3619 -1.2856 40 1 5.3156 3.6496 -1.0474 41 1 4.2724 4.4653 3.2025 42 1 4.3746 2.6884 3.2227 43 1 9.9942 3.6913 3.3984 44 1 5.0834 1.9047 5.3017 45 1 4.7343 2.1104 7.7305 46 1 5.4593 4.1464 8.9105 47 1 6.5411 5.9732 7.6631 48 1 6.8981 5.7637 5.2358 49 1 2.6782 3.8505 2.1690 50 1 2.0039 4.0441 0.5316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375654964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:53 Heat of formation + Delta-G solvation = -60.793091 kcal Electronic energy + Delta-G solvation = -31492.618953 eV Core-core repulsion = 27483.873376 eV Total energy + Delta-G solvation = -4008.745577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77175 -40.40222 -39.70249 -37.69778 -36.50919 -35.80942 -33.71247 -33.13978 -31.85533 -31.51985 -30.36240 -28.43998 -27.92152 -26.53835 -24.58497 -24.12251 -23.22206 -22.86758 -21.37273 -20.49541 -19.68291 -18.61398 -18.52776 -18.06155 -17.48178 -17.08030 -16.95373 -16.42678 -16.18980 -15.88091 -15.54537 -15.41487 -14.94231 -14.87312 -14.65299 -14.48476 -14.27399 -14.14520 -13.96471 -13.66386 -13.62159 -13.41950 -13.27732 -13.26595 -13.12674 -12.90080 -12.64166 -12.56590 -12.51405 -12.29393 -12.02512 -11.89516 -11.85569 -11.69141 -11.33730 -11.13683 -11.00815 -10.67554 -10.38775 -9.78055 -9.58407 -9.56101 -9.21185 -8.08240 -6.10460 0.75918 0.82253 1.29692 1.31324 1.33467 1.39731 1.79300 2.06608 2.28266 2.41931 3.15886 3.31344 3.48035 3.72291 3.89786 3.96034 4.04273 4.16089 4.22965 4.33192 4.34410 4.36435 4.38693 4.40117 4.47351 4.50686 4.56645 4.59027 4.69502 4.74618 4.79347 4.90665 4.91741 4.95420 4.99281 5.02977 5.17957 5.26315 5.30312 5.34676 5.49800 5.54471 5.59009 5.69344 5.75139 5.81631 5.92826 6.14848 6.29616 6.35674 6.40631 6.45307 6.95288 7.11452 7.40624 7.51814 9.01361 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.004063 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.675500 B = 6889.607984 C = 8108.403895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.606 5.606 4 C 0.110 3.890 5 C -0.151 4.151 6 C 0.100 3.900 7 N -0.612 5.612 8 C 0.515 3.485 9 O -0.543 6.543 10 C -0.115 4.115 11 C 0.086 3.914 12 H 0.031 0.969 13 C -0.486 4.486 14 H 0.032 0.968 15 C 0.029 3.971 16 N -0.912 5.912 17 Si 0.932 3.068 18 H -0.285 1.285 19 H -0.280 1.280 20 H -0.272 1.272 21 C -0.045 4.045 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.125 4.125 26 C -0.140 4.140 27 C 0.097 3.903 28 C 0.494 3.506 29 O -0.581 6.581 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.036 0.964 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.256 0.744 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.146 0.854 47 H 0.137 0.863 48 H 0.099 0.901 49 H 0.109 0.891 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.825 0.042 -9.525 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.339 5.339 4 C -0.011 4.011 5 C -0.191 4.191 6 C -0.021 4.021 7 N -0.349 5.349 8 C 0.305 3.695 9 O -0.418 6.418 10 C -0.155 4.155 11 C 0.067 3.933 12 H 0.049 0.951 13 C -0.524 4.524 14 H 0.050 0.950 15 C -0.170 4.170 16 N -0.551 5.551 17 Si 0.759 3.241 18 H -0.212 1.212 19 H -0.205 1.205 20 H -0.197 1.197 21 C -0.046 4.046 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.163 4.163 25 C -0.143 4.143 26 C -0.158 4.158 27 C -0.029 4.029 28 C 0.280 3.720 29 O -0.460 6.460 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.055 0.945 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.118 0.882 45 H 0.154 0.846 46 H 0.164 0.836 47 H 0.155 0.845 48 H 0.118 0.882 49 H 0.128 0.872 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.097 -0.164 -9.247 21.219 hybrid contribution 1.327 -1.078 -0.220 1.724 sum -17.770 -1.242 -9.467 20.173 Atomic orbital electron populations 1.22027 0.94097 1.03003 1.02105 1.21577 0.95646 0.82107 1.02820 1.48197 1.64391 1.14582 1.06705 1.22040 0.94670 0.99843 0.84580 1.22318 0.96892 0.96802 1.03040 1.21536 1.02839 0.99204 0.78568 1.47838 1.05195 1.74786 1.07086 1.21019 0.84052 0.74593 0.89881 1.90726 1.24443 1.48363 1.78229 1.21681 1.00248 1.02425 0.91104 1.17606 0.90796 0.97449 0.87487 0.95096 1.20843 0.91653 0.93074 1.46787 0.95008 1.25407 0.98857 0.97656 0.95089 1.70027 1.08363 1.26714 1.50017 0.85971 0.78653 0.81318 0.78186 1.21155 1.20529 1.19691 1.20538 0.93248 0.92771 0.98015 1.20962 1.00824 0.98136 0.94923 1.21330 1.00666 0.98743 0.93808 1.21260 1.00696 0.93809 1.00540 1.21313 0.99523 0.99943 0.93504 1.21109 1.01313 0.97902 0.95501 1.22061 0.84328 0.92582 1.03949 1.21678 0.76154 0.90648 0.83480 1.90710 1.53545 1.68956 1.32786 0.94438 0.90421 0.90466 0.88224 0.93316 0.86169 0.87785 0.86335 0.94469 0.87394 0.91786 0.89076 0.90606 0.93522 0.88188 0.84610 0.83607 0.84513 0.88235 0.87247 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.24 71.98 0.74 -1.48 16 2 C 0.10 1.90 6.08 86.38 0.52 2.42 16 3 N -0.61 -12.30 2.47 -821.17 -2.03 -14.33 16 4 C 0.11 1.27 5.83 86.35 0.50 1.77 16 5 C -0.15 -2.60 5.92 30.42 0.18 -2.42 16 6 C 0.10 2.29 5.92 86.28 0.51 2.80 16 7 N -0.61 -18.24 2.68 -826.69 -2.21 -20.46 16 8 C 0.52 21.95 7.41 87.66 0.65 22.60 16 9 O -0.54 -28.71 14.28 -3.04 -0.04 -28.75 16 10 C -0.11 -4.97 3.37 29.85 0.10 -4.87 16 11 C 0.09 4.51 1.67 -12.29 -0.02 4.48 16 12 H 0.03 1.85 6.97 -2.39 -0.02 1.84 16 13 C -0.49 -28.59 6.37 25.60 0.16 -28.43 16 14 H 0.03 1.93 7.82 -2.91 -0.02 1.90 16 15 C 0.03 1.76 5.45 84.65 0.46 2.22 16 16 N -0.91 -57.15 12.87 21.45 0.28 -56.87 16 17 Si 0.93 48.65 29.54 68.60 2.03 50.68 16 18 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 19 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 20 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 21 C -0.05 -2.17 4.77 -19.87 -0.09 -2.26 16 22 C -0.13 -5.75 8.86 22.27 0.20 -5.55 16 23 C -0.13 -4.65 10.05 22.27 0.22 -4.43 16 24 C -0.15 -4.83 10.05 22.27 0.22 -4.61 16 25 C -0.12 -4.55 10.05 22.27 0.22 -4.33 16 26 C -0.14 -6.24 9.67 22.27 0.22 -6.02 16 27 C 0.10 2.25 5.37 85.80 0.46 2.71 16 28 C 0.49 13.73 7.26 87.94 0.64 14.37 16 29 O -0.58 -21.75 16.67 -3.04 -0.05 -21.80 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.10 1.35 8.02 -2.39 -0.02 1.33 16 34 H 0.05 1.27 7.38 -2.39 -0.02 1.25 16 35 H 0.12 0.65 7.91 -2.38 -0.02 0.63 16 36 H 0.10 0.70 6.72 -2.39 -0.02 0.68 16 37 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 0.95 8.04 -2.38 -0.02 0.93 16 39 H 0.11 1.56 8.08 -2.39 -0.02 1.54 16 40 H 0.06 1.95 6.85 -2.39 -0.02 1.94 16 41 H 0.09 3.38 7.43 -2.39 -0.02 3.36 16 42 H 0.08 3.39 7.73 -2.39 -0.02 3.38 16 43 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.10 4.57 7.76 -2.91 -0.02 4.54 16 45 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 46 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 47 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 48 H 0.10 4.59 7.95 -2.91 -0.02 4.56 16 49 H 0.11 2.73 6.15 -2.39 -0.01 2.72 16 50 H 0.15 1.86 7.19 -2.39 -0.02 1.85 16 Total: -1.00 -85.65 401.23 4.78 -80.87 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.92 Total: 21.68 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 5.90 Total: -11.02 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -3.97 Total: -91.66 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.09 Total: -50.55 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal Total: -85.65 4.78 -80.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375654964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.076 kcal (2) G-P(sol) polarization free energy of solvation -85.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds