Wall clock time and date at job start Sat Apr 11 2020 07:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47288 * 2 1 4 4 C 1.46901 * 110.99731 * 72.37883 * 3 2 1 5 5 C 1.52994 * 109.47413 * 69.01490 * 4 3 2 6 6 C 1.46900 * 111.00087 * 196.33201 * 3 2 1 7 7 C 1.53000 * 109.46727 * 145.91971 * 6 3 2 8 8 H 1.08997 * 110.64461 * 296.35927 * 7 6 3 9 9 C 1.55156 * 110.72122 * 59.50867 * 7 6 3 10 10 C 1.54909 * 101.58240 * 154.03979 * 9 7 6 11 11 N 1.47425 * 104.83203 * 322.98493 * 10 9 7 12 12 S 1.65594 * 125.65019 * 204.09209 * 11 10 9 13 13 O 1.42105 * 104.27635 * 333.95520 * 12 11 10 14 14 O 1.42101 * 104.28035 * 206.10133 * 12 11 10 15 15 C 1.81395 * 104.45289 * 90.02598 * 12 11 10 16 16 C 1.52997 * 109.47644 * 179.50458 * 15 12 11 17 17 C 1.50691 * 115.55210 * 306.11323 * 16 15 12 18 18 H 1.08002 * 120.00614 * 90.39264 * 17 16 15 19 19 C 1.37880 * 119.99852 * 270.67351 * 17 16 15 20 20 N 1.31521 * 119.99849 * 5.58001 * 19 17 16 21 21 Si 1.86803 * 120.00315 * 185.58132 * 19 17 16 22 22 H 1.48503 * 109.47075 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47195 * 119.99703 * 21 19 17 24 24 H 1.48496 * 109.47012 * 239.99784 * 21 19 17 25 25 C 1.53003 * 117.51248 * 91.80767 * 16 15 12 26 26 C 1.53001 * 60.00066 * 107.48506 * 25 16 15 27 27 C 1.47027 * 108.70148 * 24.35973 * 11 10 9 28 28 H 1.09003 * 109.46591 * 64.03652 * 1 2 3 29 29 H 1.08996 * 109.47130 * 184.02890 * 1 2 3 30 30 H 1.08990 * 109.47362 * 304.03848 * 1 2 3 31 31 H 1.08997 * 109.47458 * 239.99739 * 2 1 3 32 32 H 1.09009 * 109.46718 * 119.99565 * 2 1 3 33 33 H 1.09003 * 109.46970 * 189.01555 * 4 3 2 34 34 H 1.09000 * 109.47457 * 309.01049 * 4 3 2 35 35 H 1.08999 * 109.47064 * 305.67970 * 5 4 3 36 36 H 1.09000 * 109.47439 * 65.67994 * 5 4 3 37 37 H 1.08999 * 109.47461 * 185.67996 * 5 4 3 38 38 H 1.08997 * 109.46879 * 25.92179 * 6 3 2 39 39 H 1.08999 * 109.46739 * 265.91914 * 6 3 2 40 40 H 1.09001 * 111.00646 * 35.96538 * 9 7 6 41 41 H 1.08997 * 111.03531 * 272.12815 * 9 7 6 42 42 H 1.09005 * 110.36388 * 204.14872 * 10 9 7 43 43 H 1.08997 * 110.46133 * 81.87352 * 10 9 7 44 44 H 1.09002 * 109.46826 * 59.50678 * 15 12 11 45 45 H 1.09000 * 109.47390 * 299.51053 * 15 12 11 46 46 H 0.96995 * 119.99807 * 184.99657 * 20 19 17 47 47 H 1.09007 * 117.49741 * 214.97441 * 25 16 15 48 48 H 1.08995 * 117.50006 * 359.97438 * 25 16 15 49 49 H 1.09000 * 117.49649 * 252.51291 * 26 25 16 50 50 H 1.08999 * 117.50124 * 107.48962 * 26 25 16 51 51 H 1.08998 * 109.87869 * 118.12867 * 27 11 10 52 52 H 1.08999 * 109.87995 * 239.29141 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8038 2.0197 1.3071 5 6 2.7253 1.3761 2.3451 6 6 3.4360 1.4426 -0.3856 7 6 3.6977 2.7270 -1.1748 8 1 3.1338 2.7266 -2.1075 9 6 3.3487 3.9757 -0.3226 10 6 4.2667 5.0509 -0.9558 11 7 5.5118 4.3353 -1.2889 12 16 7.0071 5.0268 -1.4563 13 8 6.7322 6.3711 -1.8261 14 8 7.7011 4.1525 -2.3357 15 6 7.7263 4.9587 0.2076 16 6 9.1311 5.5643 0.1813 17 6 10.0733 4.9766 -0.8373 18 1 10.1313 5.4022 -1.8282 19 6 10.8572 3.8918 -0.5061 20 7 10.7047 3.3016 0.6594 21 14 12.1360 3.2602 -1.7125 22 1 12.1086 4.0912 -2.9430 23 1 13.4829 3.3380 -1.0921 24 1 11.8325 1.8492 -2.0618 25 6 9.2627 7.0578 0.4865 26 6 9.7275 6.0233 1.5134 27 6 5.2049 2.9070 -1.4542 28 1 -0.3632 0.4499 -0.9240 29 1 -0.3633 -1.0251 0.0722 30 1 -0.3633 0.5752 0.8515 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0253 3.0845 1.2350 34 1 0.7653 1.8844 1.6096 35 1 2.5744 0.2966 2.3453 36 1 3.7632 1.5978 2.0966 37 1 2.4950 1.7754 3.3328 38 1 3.6792 0.5795 -1.0053 39 1 4.0571 1.4335 0.5101 40 1 3.5999 3.8158 0.7259 41 1 2.2982 4.2441 -0.4340 42 1 4.4671 5.8479 -0.2397 43 1 3.8103 5.4583 -1.8579 44 1 7.7842 3.9210 0.5361 45 1 7.0998 5.5239 0.8976 46 1 11.3037 2.5855 0.9224 47 1 10.0309 7.6152 -0.0496 48 1 8.3484 7.6092 0.7056 49 1 9.1190 5.8941 2.4085 50 1 10.8015 5.9001 1.6531 51 1 5.4352 2.5938 -2.4725 52 1 5.7848 2.3186 -0.7431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451288785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:26 Heat of formation + Delta-G solvation = -38.284206 kcal Electronic energy + Delta-G solvation = -30006.205151 eV Core-core repulsion = 26133.879584 eV Total energy + Delta-G solvation = -3872.325567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.49209 -37.49657 -36.72965 -36.19364 -34.99222 -32.32070 -32.00449 -31.43442 -29.62106 -28.55689 -28.17276 -25.46551 -25.15414 -23.86134 -22.09032 -21.18255 -20.60133 -19.93856 -19.50030 -18.31101 -17.07238 -16.56786 -16.42781 -16.01750 -15.77578 -15.07857 -14.84215 -14.59254 -14.34807 -14.07580 -13.76825 -13.72208 -13.39116 -13.24111 -13.01579 -12.86330 -12.67303 -12.37204 -12.19543 -12.01629 -11.92593 -11.80363 -11.77168 -11.36934 -11.24827 -11.18081 -11.06000 -11.02726 -10.91236 -10.83784 -10.81996 -10.53766 -10.49425 -10.43791 -10.42270 -10.08432 -9.70596 -8.95834 -8.70005 -8.50795 -8.46768 -8.05638 -6.12974 -4.24114 1.07909 3.30791 3.39153 3.43964 3.47182 3.65742 4.41014 4.49719 4.61107 4.65490 4.75827 4.76174 4.87575 4.96535 5.00624 5.05969 5.16010 5.17952 5.19870 5.25512 5.30774 5.34565 5.44531 5.49398 5.52962 5.62172 5.68587 5.70247 5.74569 5.76561 5.80670 5.89493 5.90283 5.93937 6.01693 6.09357 6.09628 6.25087 6.30802 6.35581 6.46944 6.61562 6.70997 6.75995 6.89047 6.90180 6.99702 7.22521 7.42875 7.81479 8.19700 8.82452 9.48997 10.94934 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003131 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.121850 B = 8939.840829 C = 9357.268401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.037 3.963 5 C -0.197 4.197 6 C 0.051 3.949 7 C -0.086 4.086 8 H 0.087 0.913 9 C -0.122 4.122 10 C 0.120 3.880 11 N -1.023 6.023 12 S 2.625 3.375 13 O -0.972 6.972 14 O -0.938 6.938 15 C -0.556 4.556 16 C 0.041 3.959 17 C -0.516 4.516 18 H 0.069 0.931 19 C 0.084 3.916 20 N -0.874 5.874 21 Si 0.892 3.108 22 H -0.268 1.268 23 H -0.284 1.284 24 H -0.280 1.280 25 C -0.209 4.209 26 C -0.135 4.135 27 C 0.125 3.875 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.128 0.872 45 H 0.096 0.904 46 H 0.262 0.738 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.070 0.930 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.591 -5.005 3.096 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 N -0.257 5.257 4 C -0.091 4.091 5 C -0.256 4.256 6 C -0.077 4.077 7 C -0.106 4.106 8 H 0.106 0.894 9 C -0.161 4.161 10 C -0.005 4.005 11 N -0.859 5.859 12 S 2.724 3.276 13 O -0.963 6.963 14 O -0.929 6.929 15 C -0.689 4.689 16 C 0.038 3.962 17 C -0.553 4.553 18 H 0.087 0.913 19 C -0.121 4.121 20 N -0.510 5.510 21 Si 0.719 3.281 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.206 1.206 25 C -0.246 4.246 26 C -0.174 4.174 27 C -0.001 4.001 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.146 0.854 45 H 0.114 0.886 46 H 0.071 0.929 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.106 0.894 51 H 0.089 0.911 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.432 -4.581 1.969 20.061 hybrid contribution 1.156 -1.137 0.950 1.879 sum -18.276 -5.718 2.919 19.371 Atomic orbital electron populations 1.21769 0.95050 1.01123 1.02445 1.22194 0.96069 0.89192 1.00858 1.62118 1.18126 1.17064 1.28350 1.22457 0.99480 1.00087 0.87059 1.22466 1.01474 1.01353 1.00263 1.22307 0.88338 0.97714 0.99373 1.22163 0.94736 0.94354 0.99378 0.89444 1.22939 0.99496 0.94448 0.99236 1.21924 0.84585 0.94681 0.99348 1.59120 1.23455 1.16029 1.87301 1.04716 0.71095 0.73475 0.78321 1.93488 1.83678 1.36725 1.82428 1.93540 1.71305 1.66322 1.61699 1.30020 1.08022 1.10069 1.20801 1.18290 0.89261 0.90514 0.98109 1.20590 1.23179 1.13874 0.97653 0.91315 1.24910 0.96880 0.94887 0.95383 1.70032 1.36525 1.23526 1.20895 0.86515 0.80608 0.79209 0.81736 1.19169 1.20958 1.20617 1.23199 1.01962 0.93413 1.06067 1.22462 1.00547 1.02302 0.92072 1.21640 0.95317 0.81536 1.01626 0.92017 0.92661 0.92726 0.90962 0.94495 0.89465 0.90897 0.92612 0.91727 0.92047 0.91038 0.92394 0.90830 0.89869 0.91192 0.91664 0.85424 0.88582 0.92887 0.89547 0.91074 0.91690 0.89392 0.91136 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.04 37.16 0.37 -0.60 16 2 C 0.04 0.34 5.54 -3.82 -0.02 0.32 16 3 N -0.53 -4.56 4.42 -234.63 -1.04 -5.60 16 4 C 0.04 0.29 5.57 -3.83 -0.02 0.27 16 5 C -0.20 -1.57 9.28 37.15 0.34 -1.23 16 6 C 0.05 0.48 4.55 -3.82 -0.02 0.46 16 7 C -0.09 -0.91 3.23 -88.78 -0.29 -1.20 16 8 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 9 C -0.12 -1.24 4.65 -24.58 -0.11 -1.35 16 10 C 0.12 1.56 6.89 -2.53 -0.02 1.54 16 11 N -1.02 -16.57 3.62 -111.41 -0.40 -16.97 16 12 S 2.63 55.64 5.30 -107.50 -0.57 55.07 16 13 O -0.97 -22.28 17.60 -57.54 -1.01 -23.29 16 14 O -0.94 -23.26 16.51 -57.54 -0.95 -24.21 16 15 C -0.56 -11.85 6.12 37.16 0.23 -11.62 16 16 C 0.04 1.00 1.56 -155.66 -0.24 0.76 16 17 C -0.52 -14.31 7.25 -34.44 -0.25 -14.56 16 18 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 19 C 0.08 2.33 5.37 -17.82 -0.10 2.23 16 20 N -0.87 -24.21 12.71 55.43 0.70 -23.51 16 21 Si 0.89 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C -0.21 -4.63 9.92 -26.73 -0.27 -4.90 16 26 C -0.13 -3.11 9.18 -26.73 -0.25 -3.35 16 27 C 0.13 1.75 6.50 -3.05 -0.02 1.73 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.36 6.50 -51.93 -0.34 0.02 16 31 H 0.07 0.54 7.60 -51.93 -0.39 0.15 16 32 H 0.04 0.28 6.10 -51.92 -0.32 -0.03 16 33 H 0.09 0.69 4.83 -51.93 -0.25 0.43 16 34 H 0.07 0.53 6.39 -51.93 -0.33 0.19 16 35 H 0.05 0.44 6.25 -51.93 -0.32 0.12 16 36 H 0.06 0.59 6.10 -51.93 -0.32 0.27 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.65 7.40 -51.93 -0.38 0.26 16 39 H 0.06 0.57 5.16 -51.93 -0.27 0.31 16 40 H 0.07 0.71 6.78 -51.93 -0.35 0.36 16 41 H 0.08 0.72 7.78 -51.93 -0.40 0.32 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.13 2.78 8.14 -51.92 -0.42 2.35 16 45 H 0.10 1.73 8.09 -51.92 -0.42 1.31 16 46 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 47 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 48 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 49 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 50 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 51 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 52 H 0.06 0.88 7.77 -51.93 -0.40 0.47 16 LS Contribution 407.27 15.07 6.14 6.14 Total: -1.00 -32.40 407.27 -11.93 -44.33 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -9.12 Total: 2.72 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: -0.65 Total: -31.50 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.74 Total: -46.08 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.96 Total: -47.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 55.64 SS G_CDS: -0.57 Total: 55.07 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.40 -11.93 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451288785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.045 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds