Wall clock time and date at job start Sat Apr 11 2020 07:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47288 * 2 1 4 4 C 1.46901 * 110.99731 * 72.37883 * 3 2 1 5 5 C 1.52994 * 109.47413 * 69.01490 * 4 3 2 6 6 C 1.46900 * 111.00087 * 196.33201 * 3 2 1 7 7 C 1.53000 * 109.46727 * 145.91971 * 6 3 2 8 8 H 1.08997 * 110.64461 * 296.35927 * 7 6 3 9 9 C 1.55156 * 110.72122 * 59.50867 * 7 6 3 10 10 C 1.54909 * 101.58240 * 154.03979 * 9 7 6 11 11 N 1.47425 * 104.83203 * 322.98493 * 10 9 7 12 12 S 1.65594 * 125.65019 * 204.09209 * 11 10 9 13 13 O 1.42105 * 104.27635 * 333.95520 * 12 11 10 14 14 O 1.42101 * 104.28035 * 206.10133 * 12 11 10 15 15 C 1.81395 * 104.45289 * 90.02598 * 12 11 10 16 16 C 1.52997 * 109.47644 * 179.50458 * 15 12 11 17 17 C 1.50691 * 115.55210 * 306.11323 * 16 15 12 18 18 H 1.08002 * 120.00614 * 90.39264 * 17 16 15 19 19 C 1.37880 * 119.99852 * 270.67351 * 17 16 15 20 20 N 1.31521 * 119.99849 * 5.58001 * 19 17 16 21 21 Si 1.86803 * 120.00315 * 185.58132 * 19 17 16 22 22 H 1.48503 * 109.47075 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47195 * 119.99703 * 21 19 17 24 24 H 1.48496 * 109.47012 * 239.99784 * 21 19 17 25 25 C 1.53003 * 117.51248 * 91.80767 * 16 15 12 26 26 C 1.53001 * 60.00066 * 107.48506 * 25 16 15 27 27 C 1.47027 * 108.70148 * 24.35973 * 11 10 9 28 28 H 1.09003 * 109.46591 * 64.03652 * 1 2 3 29 29 H 1.08996 * 109.47130 * 184.02890 * 1 2 3 30 30 H 1.08990 * 109.47362 * 304.03848 * 1 2 3 31 31 H 1.08997 * 109.47458 * 239.99739 * 2 1 3 32 32 H 1.09009 * 109.46718 * 119.99565 * 2 1 3 33 33 H 1.09003 * 109.46970 * 189.01555 * 4 3 2 34 34 H 1.09000 * 109.47457 * 309.01049 * 4 3 2 35 35 H 1.08999 * 109.47064 * 305.67970 * 5 4 3 36 36 H 1.09000 * 109.47439 * 65.67994 * 5 4 3 37 37 H 1.08999 * 109.47461 * 185.67996 * 5 4 3 38 38 H 1.08997 * 109.46879 * 25.92179 * 6 3 2 39 39 H 1.08999 * 109.46739 * 265.91914 * 6 3 2 40 40 H 1.09001 * 111.00646 * 35.96538 * 9 7 6 41 41 H 1.08997 * 111.03531 * 272.12815 * 9 7 6 42 42 H 1.09005 * 110.36388 * 204.14872 * 10 9 7 43 43 H 1.08997 * 110.46133 * 81.87352 * 10 9 7 44 44 H 1.09002 * 109.46826 * 59.50678 * 15 12 11 45 45 H 1.09000 * 109.47390 * 299.51053 * 15 12 11 46 46 H 0.96995 * 119.99807 * 184.99657 * 20 19 17 47 47 H 1.09007 * 117.49741 * 214.97441 * 25 16 15 48 48 H 1.08995 * 117.50006 * 359.97438 * 25 16 15 49 49 H 1.09000 * 117.49649 * 252.51291 * 26 25 16 50 50 H 1.08999 * 117.50124 * 107.48962 * 26 25 16 51 51 H 1.08998 * 109.87869 * 118.12867 * 27 11 10 52 52 H 1.08999 * 109.87995 * 239.29141 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8038 2.0197 1.3071 5 6 2.7253 1.3761 2.3451 6 6 3.4360 1.4426 -0.3856 7 6 3.6977 2.7270 -1.1748 8 1 3.1338 2.7266 -2.1075 9 6 3.3487 3.9757 -0.3226 10 6 4.2667 5.0509 -0.9558 11 7 5.5118 4.3353 -1.2889 12 16 7.0071 5.0268 -1.4563 13 8 6.7322 6.3711 -1.8261 14 8 7.7011 4.1525 -2.3357 15 6 7.7263 4.9587 0.2076 16 6 9.1311 5.5643 0.1813 17 6 10.0733 4.9766 -0.8373 18 1 10.1313 5.4022 -1.8282 19 6 10.8572 3.8918 -0.5061 20 7 10.7047 3.3016 0.6594 21 14 12.1360 3.2602 -1.7125 22 1 12.1086 4.0912 -2.9430 23 1 13.4829 3.3380 -1.0921 24 1 11.8325 1.8492 -2.0618 25 6 9.2627 7.0578 0.4865 26 6 9.7275 6.0233 1.5134 27 6 5.2049 2.9070 -1.4542 28 1 -0.3632 0.4499 -0.9240 29 1 -0.3633 -1.0251 0.0722 30 1 -0.3633 0.5752 0.8515 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0253 3.0845 1.2350 34 1 0.7653 1.8844 1.6096 35 1 2.5744 0.2966 2.3453 36 1 3.7632 1.5978 2.0966 37 1 2.4950 1.7754 3.3328 38 1 3.6792 0.5795 -1.0053 39 1 4.0571 1.4335 0.5101 40 1 3.5999 3.8158 0.7259 41 1 2.2982 4.2441 -0.4340 42 1 4.4671 5.8479 -0.2397 43 1 3.8103 5.4583 -1.8579 44 1 7.7842 3.9210 0.5361 45 1 7.0998 5.5239 0.8976 46 1 11.3037 2.5855 0.9224 47 1 10.0309 7.6152 -0.0496 48 1 8.3484 7.6092 0.7056 49 1 9.1190 5.8941 2.4085 50 1 10.8015 5.9001 1.6531 51 1 5.4352 2.5938 -2.4725 52 1 5.7848 2.3186 -0.7431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451288785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:25 Heat of formation + Delta-G solvation = -59.443005 kcal Electronic energy + Delta-G solvation = -30007.122666 eV Core-core repulsion = 26133.879584 eV Total energy + Delta-G solvation = -3873.243081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.32133 -38.58699 -38.36373 -37.96336 -36.77553 -34.08083 -33.15892 -32.11482 -30.58098 -29.90974 -29.34528 -27.51142 -25.94855 -24.59469 -23.11518 -22.96555 -21.44935 -21.34971 -20.64250 -19.83065 -18.60712 -18.30022 -17.47071 -16.94308 -16.88006 -16.60484 -16.51851 -16.13255 -15.63139 -15.14119 -15.07562 -14.81835 -14.70744 -14.22463 -13.97112 -13.85987 -13.80108 -13.75380 -13.53309 -13.17073 -13.01226 -12.97176 -12.91271 -12.88638 -12.85731 -12.76630 -12.45044 -12.36751 -12.26158 -12.16515 -11.99655 -11.90102 -11.80551 -11.59886 -11.57980 -11.37496 -11.14850 -10.89216 -10.54179 -10.14112 -9.72635 -9.12751 -8.21965 -6.36704 -0.56142 1.33999 1.38714 1.49551 1.97215 2.39136 2.93552 3.00967 3.06802 3.28482 3.39754 3.65401 3.81608 3.96284 4.02754 4.11184 4.17421 4.26146 4.36939 4.39576 4.41504 4.48730 4.52270 4.55990 4.57334 4.61059 4.61848 4.74211 4.77017 4.81064 4.83941 4.90089 4.96217 5.00080 5.03732 5.11765 5.16976 5.18913 5.19685 5.21882 5.25892 5.32155 5.40669 5.44293 5.52945 5.60141 5.60239 5.69033 6.18842 6.21643 6.27040 6.70073 7.37201 8.85526 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003131 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.121850 B = 8939.840829 C = 9357.268401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.043 3.957 3 N -0.535 5.535 4 C 0.037 3.963 5 C -0.194 4.194 6 C 0.054 3.946 7 C -0.074 4.074 8 H 0.092 0.908 9 C -0.110 4.110 10 C 0.107 3.893 11 N -1.020 6.020 12 S 2.637 3.363 13 O -0.995 6.995 14 O -0.985 6.985 15 C -0.550 4.550 16 C 0.006 3.994 17 C -0.533 4.533 18 H 0.046 0.954 19 C 0.046 3.954 20 N -0.890 5.890 21 Si 0.933 3.067 22 H -0.275 1.275 23 H -0.268 1.268 24 H -0.278 1.278 25 C -0.196 4.196 26 C -0.131 4.131 27 C 0.116 3.884 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.265 0.735 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.726 -5.094 4.240 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 N -0.259 5.259 4 C -0.091 4.091 5 C -0.252 4.252 6 C -0.075 4.075 7 C -0.095 4.095 8 H 0.110 0.890 9 C -0.148 4.148 10 C -0.017 4.017 11 N -0.859 5.859 12 S 2.737 3.263 13 O -0.985 6.985 14 O -0.976 6.976 15 C -0.683 4.683 16 C 0.004 3.996 17 C -0.570 4.570 18 H 0.064 0.936 19 C -0.157 4.157 20 N -0.526 5.526 21 Si 0.758 3.242 22 H -0.200 1.200 23 H -0.193 1.193 24 H -0.204 1.204 25 C -0.233 4.233 26 C -0.170 4.170 27 C -0.010 4.010 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.138 0.862 45 H 0.150 0.850 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.118 0.882 49 H 0.105 0.895 50 H 0.085 0.915 51 H 0.078 0.922 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.559 -4.660 3.115 22.276 hybrid contribution 1.754 -1.107 0.589 2.156 sum -19.805 -5.768 3.703 20.958 Atomic orbital electron populations 1.21727 0.94176 1.01753 1.02237 1.22239 0.96733 0.88669 1.00846 1.62109 1.17178 1.17713 1.28875 1.22499 0.99939 1.00085 0.86552 1.22432 1.00746 1.01337 1.00731 1.22226 0.89104 0.97042 0.99082 1.22083 0.91968 0.95402 1.00039 0.88955 1.22937 1.00003 0.92714 0.99179 1.22291 0.83523 0.95732 1.00196 1.58687 1.22827 1.17285 1.87105 1.03980 0.71699 0.72651 0.78005 1.93445 1.84283 1.37901 1.82881 1.93474 1.73358 1.67281 1.63454 1.29882 1.06889 1.09873 1.21666 1.18422 0.90444 0.92384 0.98376 1.20726 1.24440 1.14292 0.97582 0.93626 1.25455 0.98357 0.95166 0.96731 1.70062 1.37110 1.23869 1.21605 0.85895 0.79705 0.78540 0.80056 1.19964 1.19285 1.20375 1.23265 1.02894 0.92392 1.04781 1.22404 0.99650 1.02438 0.92459 1.21862 0.97924 0.80147 1.01089 0.92498 0.91736 0.92519 0.91049 0.94488 0.89166 0.89966 0.92768 0.92938 0.91384 0.90875 0.92774 0.90037 0.87565 0.90243 0.91233 0.86235 0.85046 0.92594 0.89961 0.88249 0.89498 0.91481 0.92228 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 10.04 71.98 0.72 -0.85 16 2 C 0.04 0.57 5.54 86.30 0.48 1.05 16 3 N -0.54 -7.93 4.42 -896.23 -3.96 -11.90 16 4 C 0.04 0.48 5.57 86.30 0.48 0.96 16 5 C -0.19 -2.71 9.28 71.98 0.67 -2.04 16 6 C 0.05 0.92 4.55 86.30 0.39 1.32 16 7 C -0.07 -1.45 3.23 -9.60 -0.03 -1.48 16 8 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 9 C -0.11 -1.90 4.65 31.99 0.15 -1.76 16 10 C 0.11 2.55 6.89 86.85 0.60 3.15 16 11 N -1.02 -32.27 3.62 -506.38 -1.83 -34.10 16 12 S 2.64 112.11 5.30 -56.49 -0.30 111.81 16 13 O -0.99 -45.34 17.60 -127.65 -2.25 -47.59 16 14 O -0.99 -50.38 16.51 -127.65 -2.11 -52.49 16 15 C -0.55 -22.99 6.12 71.98 0.44 -22.55 16 16 C 0.01 0.29 1.56 -52.93 -0.08 0.21 16 17 C -0.53 -30.14 7.25 25.60 0.19 -29.96 16 18 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 19 C 0.05 2.57 5.37 84.65 0.45 3.02 16 20 N -0.89 -49.55 12.71 21.45 0.27 -49.28 16 21 Si 0.93 45.19 29.55 68.60 2.03 47.21 16 22 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 25 C -0.20 -8.44 9.92 30.60 0.30 -8.14 16 26 C -0.13 -5.89 9.18 30.60 0.28 -5.61 16 27 C 0.12 3.18 6.50 86.73 0.56 3.75 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.61 6.50 -2.39 -0.02 0.59 16 31 H 0.07 0.96 7.60 -2.39 -0.02 0.94 16 32 H 0.04 0.50 6.10 -2.38 -0.01 0.48 16 33 H 0.09 1.12 4.83 -2.39 -0.01 1.11 16 34 H 0.08 0.94 6.39 -2.39 -0.02 0.93 16 35 H 0.05 0.77 6.25 -2.39 -0.01 0.75 16 36 H 0.05 0.87 6.10 -2.39 -0.01 0.85 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.23 7.40 -2.39 -0.02 1.21 16 39 H 0.05 0.99 5.16 -2.39 -0.01 0.98 16 40 H 0.08 1.32 6.78 -2.39 -0.02 1.31 16 41 H 0.11 1.43 7.78 -2.39 -0.02 1.41 16 42 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.12 5.18 8.14 -2.39 -0.02 5.16 16 45 H 0.13 4.42 8.09 -2.39 -0.02 4.40 16 46 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 47 H 0.08 3.56 8.14 -2.38 -0.02 3.54 16 48 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 49 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 50 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 51 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.06 1.70 7.77 -2.39 -0.02 1.68 16 Total: -1.00 -69.99 407.27 -1.66 -71.65 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.89 Total: 23.61 kcal Atomic # 6 Polarization: -64.54 SS G_CDS: 5.60 Total: -58.94 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -5.52 Total: -95.27 kcal Atomic # 8 Polarization: -95.73 SS G_CDS: -4.35 Total: -100.08 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 112.11 SS G_CDS: -0.30 Total: 111.81 kcal Total: -69.99 -1.66 -71.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451288785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.208 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds