Wall clock time and date at job start Sat Apr 11 2020 07:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00062 * 2 1 4 4 H 1.08996 * 109.87208 * 358.99080 * 3 2 1 5 5 O 1.43747 * 110.00463 * 237.90659 * 3 2 1 6 6 C 1.44379 * 106.97378 * 267.01942 * 5 3 2 7 7 C 1.54990 * 103.49303 * 319.94010 * 6 5 3 8 8 C 1.54098 * 109.87706 * 120.00259 * 3 2 1 9 9 H 1.08994 * 110.49167 * 358.73100 * 8 3 2 10 10 N 1.46904 * 110.48400 * 236.22038 * 8 3 2 11 11 C 1.46898 * 110.99967 * 155.00316 * 10 8 3 12 12 H 1.09003 * 109.46995 * 324.99693 * 11 10 8 13 13 C 1.52999 * 109.47369 * 84.99648 * 11 10 8 14 14 C 1.50704 * 109.47332 * 205.00121 * 11 10 8 15 15 O 1.21287 * 119.99391 * 339.41903 * 14 11 10 16 16 N 1.34775 * 120.00431 * 159.42141 * 14 11 10 17 17 C 1.46499 * 119.99511 * 354.63568 * 16 14 11 18 18 C 1.50694 * 109.47589 * 94.45982 * 17 16 14 19 19 H 1.08007 * 120.00206 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00304 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99698 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99755 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47383 * 60.00200 * 22 20 18 24 24 H 1.48508 * 109.46821 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47355 * 299.99871 * 22 20 18 26 26 C 1.39919 * 120.00112 * 174.35227 * 16 14 11 27 27 C 1.38869 * 120.07020 * 5.92004 * 26 16 14 28 28 C 1.38114 * 119.92774 * 179.71757 * 27 26 16 29 29 C 1.38274 * 120.07257 * 0.57408 * 28 27 26 30 30 C 1.38286 * 120.13795 * 359.67753 * 29 28 27 31 31 C 1.38105 * 120.07281 * 0.04580 * 30 29 28 32 32 H 1.08009 * 119.99997 * 180.02562 * 1 2 3 33 33 H 1.07994 * 120.00297 * 359.97438 * 1 2 3 34 34 H 1.08005 * 119.99841 * 180.02562 * 2 1 3 35 35 H 1.09000 * 110.61742 * 78.44062 * 6 5 3 36 36 H 1.09001 * 110.61303 * 201.43339 * 6 5 3 37 37 H 1.09008 * 110.90317 * 278.82830 * 7 6 5 38 38 H 1.08993 * 110.91075 * 155.22746 * 7 6 5 39 39 H 1.00901 * 110.99976 * 278.95167 * 10 8 3 40 40 H 1.08998 * 109.47167 * 66.44380 * 13 11 10 41 41 H 1.09003 * 109.47077 * 186.43611 * 13 11 10 42 42 H 1.09000 * 109.47462 * 306.43801 * 13 11 10 43 43 H 1.09009 * 109.46788 * 214.45459 * 17 16 14 44 44 H 1.08999 * 109.47283 * 334.45281 * 17 16 14 45 45 H 0.97003 * 119.99625 * 180.02562 * 21 20 18 46 46 H 1.08005 * 120.03903 * 359.97438 * 27 26 16 47 47 H 1.08006 * 119.96144 * 180.25374 * 28 27 26 48 48 H 1.08000 * 119.93573 * 179.70416 * 29 28 27 49 49 H 1.08005 * 119.96201 * 180.02562 * 30 29 28 50 50 H 1.08003 * 120.03738 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3611 2.1384 -0.0181 5 8 2.9309 1.3721 -1.1443 6 6 4.2194 0.8726 -0.7264 7 6 4.3943 1.4670 0.6943 8 6 2.9530 1.3965 1.2550 9 1 2.8266 0.5108 1.8776 10 7 2.6390 2.6105 2.0203 11 6 2.9945 2.4468 3.4362 12 1 2.8136 1.4155 3.7393 13 6 4.4737 2.7843 3.6331 14 6 2.1520 3.3721 4.2759 15 8 1.6224 4.3380 3.7684 16 7 1.9871 3.1264 5.5908 17 6 2.5277 1.8989 6.1800 18 6 3.8910 2.1774 6.7585 19 1 4.3129 3.1696 6.6935 20 6 4.5999 1.1657 7.3709 21 7 4.0861 -0.0422 7.4505 22 14 6.2901 1.5109 8.0874 23 1 6.1792 2.5567 9.1358 24 1 6.8381 0.2666 8.6847 25 1 7.1971 1.9836 7.0108 26 6 1.3047 4.0465 6.3943 27 6 0.6908 5.1515 5.8193 28 6 0.0131 6.0548 6.6145 29 6 -0.0446 5.8661 7.9831 30 6 0.5701 4.7696 8.5593 31 6 1.2446 3.8596 7.7691 32 1 -0.5400 -0.9354 0.0004 33 1 -0.5400 0.9352 0.0004 34 1 1.8500 -0.9354 -0.0004 35 1 4.2149 -0.2168 -0.6887 36 1 5.0044 1.2314 -1.3920 37 1 4.7420 2.4989 0.6440 38 1 5.0737 0.8577 1.2900 39 1 3.0976 3.4169 1.6234 40 1 4.6332 3.8450 3.4397 41 1 4.7657 2.5540 4.6578 42 1 5.0761 2.1943 2.9423 43 1 1.8619 1.5513 6.9700 44 1 2.6095 1.1317 5.4100 45 1 4.5847 -0.7539 7.8817 46 1 0.7398 5.3023 4.7509 47 1 -0.4680 6.9122 6.1673 48 1 -0.5711 6.5764 8.6033 49 1 0.5230 4.6248 9.6285 50 1 1.7248 3.0036 8.2197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451610314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:35 Heat of formation + Delta-G solvation = -7.822288 kcal Electronic energy + Delta-G solvation = -31137.377986 eV Core-core repulsion = 27130.929396 eV Total energy + Delta-G solvation = -4006.448590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.41738 -39.76790 -37.89357 -35.75986 -35.28909 -33.75219 -32.78467 -31.59937 -30.25922 -29.71577 -28.90703 -27.38870 -26.88772 -24.15324 -23.43979 -22.81862 -21.91259 -21.17639 -21.09350 -19.98751 -18.83594 -17.17084 -16.87559 -16.58730 -16.45357 -16.25846 -15.52213 -15.30797 -14.86277 -14.45955 -14.39063 -14.08940 -13.81839 -13.72452 -13.45567 -13.23572 -13.06293 -12.90151 -12.70096 -12.57738 -12.22622 -11.96448 -11.85499 -11.73851 -11.53646 -11.50610 -11.35824 -11.13818 -11.11656 -11.02117 -10.92271 -10.65946 -10.56101 -10.35285 -10.08295 -9.85327 -9.50381 -9.22692 -8.76657 -8.65871 -8.30678 -8.15530 -7.18341 -6.34627 -4.42726 1.90557 2.04820 2.17083 3.13324 3.19668 3.20210 3.27700 3.46763 3.99516 4.16630 4.24829 4.51875 4.53036 4.73695 4.94677 4.98559 5.00381 5.06037 5.13988 5.15963 5.33658 5.48849 5.50181 5.51561 5.59289 5.60604 5.67415 5.74521 5.78165 5.85213 5.91415 6.05522 6.11053 6.13300 6.19634 6.24927 6.52899 6.56027 6.67817 6.70830 6.77404 6.81901 6.88479 6.99940 7.07910 7.12460 7.17067 7.31615 7.47216 7.57588 7.81958 7.86607 8.12412 8.61494 8.81396 9.23951 10.71021 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.004017 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.990053 B = 6968.649565 C = 9081.434043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.173 4.173 3 C 0.110 3.890 4 H 0.110 0.890 5 O -0.369 6.369 6 C 0.046 3.954 7 C -0.186 4.186 8 C 0.068 3.932 9 H 0.096 0.904 10 N -0.661 5.661 11 C 0.078 3.922 12 H 0.108 0.892 13 C -0.189 4.189 14 C 0.528 3.472 15 O -0.530 6.530 16 N -0.535 5.535 17 C 0.228 3.772 18 C -0.538 4.538 19 H 0.065 0.935 20 C 0.070 3.930 21 N -0.886 5.886 22 Si 0.895 3.105 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.171 3.829 27 C -0.183 4.183 28 C -0.110 4.110 29 C -0.163 4.163 30 C -0.107 4.107 31 C -0.144 4.144 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.350 0.650 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.268 0.732 46 H 0.180 0.820 47 H 0.113 0.887 48 H 0.109 0.891 49 H 0.116 0.884 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 1.135 -9.365 9.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.051 3.949 4 H 0.127 0.873 5 O -0.287 6.287 6 C -0.031 4.031 7 C -0.225 4.225 8 C -0.043 4.043 9 H 0.114 0.886 10 N -0.292 5.292 11 C -0.035 4.035 12 H 0.125 0.875 13 C -0.248 4.248 14 C 0.317 3.683 15 O -0.409 6.409 16 N -0.254 5.254 17 C 0.109 3.891 18 C -0.576 4.576 19 H 0.083 0.917 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.722 3.278 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C 0.075 3.925 27 C -0.202 4.202 28 C -0.129 4.129 29 C -0.182 4.182 30 C -0.125 4.125 31 C -0.165 4.165 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.171 0.829 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.196 0.804 47 H 0.131 0.869 48 H 0.127 0.873 49 H 0.134 0.866 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.862 1.265 -9.722 10.213 hybrid contribution 2.093 -0.155 0.975 2.314 sum -0.769 1.110 -8.747 8.850 Atomic orbital electron populations 1.23862 0.95801 1.02086 0.98910 1.23228 0.96425 0.98377 1.01136 1.21936 0.92234 0.96032 0.84662 0.87269 1.88956 1.21464 1.84869 1.33455 1.23483 0.86380 0.98225 0.94965 1.23975 0.98522 1.02737 0.97284 1.23006 0.91782 0.94477 0.95025 0.88596 1.60143 1.63609 1.04354 1.01074 1.21478 0.94072 1.00337 0.87575 0.87451 1.22651 0.94127 1.01160 1.06866 1.20530 0.80364 0.85663 0.81697 1.90218 1.48519 1.29981 1.72154 1.45972 1.50403 1.21698 1.07372 1.19707 0.94696 0.79717 0.95002 1.21299 1.01252 0.96677 1.38381 0.91733 1.24905 0.98336 0.94772 0.95399 1.69902 1.38335 1.01273 1.42818 0.86592 0.83635 0.77844 0.79735 1.19904 1.21050 1.19993 1.18069 0.93483 0.90349 0.90554 1.22815 0.98849 0.93998 1.04531 1.21021 0.99347 0.98950 0.93558 1.20968 1.03145 0.98938 0.95183 1.20853 0.97963 0.94629 0.99084 1.21128 1.01757 1.01601 0.91985 0.88318 0.88180 0.87433 0.92210 0.89143 0.90080 0.89682 0.82932 0.92945 0.87308 0.92214 0.93767 0.93621 0.92213 0.80413 0.86905 0.87287 0.86633 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 14.32 29.02 0.42 -1.44 16 2 C -0.17 -2.01 8.88 -36.03 -0.32 -2.33 16 3 C 0.11 1.37 3.63 -27.31 -0.10 1.27 16 4 H 0.11 1.47 7.60 -51.93 -0.39 1.08 16 5 O -0.37 -4.75 11.18 -35.23 -0.39 -5.14 16 6 C 0.05 0.47 7.66 38.21 0.29 0.77 16 7 C -0.19 -1.98 5.20 -24.73 -0.13 -2.11 16 8 C 0.07 0.85 2.97 -66.18 -0.20 0.66 16 9 H 0.10 1.25 6.99 -51.93 -0.36 0.89 16 10 N -0.66 -9.64 5.58 -99.35 -0.55 -10.19 16 11 C 0.08 1.30 2.29 -68.86 -0.16 1.14 16 12 H 0.11 1.88 5.42 -51.93 -0.28 1.60 16 13 C -0.19 -3.05 9.03 37.16 0.34 -2.72 16 14 C 0.53 10.44 6.86 -10.98 -0.08 10.36 16 15 O -0.53 -11.07 12.96 5.55 0.07 -11.00 16 16 N -0.54 -11.16 2.69 -114.74 -0.31 -11.47 16 17 C 0.23 5.05 4.27 -5.20 -0.02 5.03 16 18 C -0.54 -12.69 6.56 -34.44 -0.23 -12.92 16 19 H 0.06 1.58 7.66 -52.48 -0.40 1.18 16 20 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -22.55 13.29 55.43 0.74 -21.81 16 22 Si 0.89 19.26 29.54 -169.99 -5.02 14.24 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C 0.17 3.55 6.48 -83.70 -0.54 3.01 16 27 C -0.18 -3.57 9.06 -39.39 -0.36 -3.93 16 28 C -0.11 -1.86 10.04 -39.61 -0.40 -2.26 16 29 C -0.16 -2.61 10.04 -39.55 -0.40 -3.01 16 30 C -0.11 -1.82 10.04 -39.61 -0.40 -2.21 16 31 C -0.14 -2.85 9.06 -39.39 -0.36 -3.20 16 32 H 0.10 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.10 1.08 7.85 -52.49 -0.41 0.67 16 34 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.86 7.57 -51.92 -0.39 0.47 16 38 H 0.08 0.86 7.66 -51.93 -0.40 0.46 16 39 H 0.35 4.97 7.85 -39.29 -0.31 4.67 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.11 2.07 5.30 -51.93 -0.28 1.80 16 42 H 0.06 0.82 5.98 -51.93 -0.31 0.51 16 43 H 0.04 1.05 6.75 -51.92 -0.35 0.70 16 44 H 0.05 1.02 5.83 -51.93 -0.30 0.72 16 45 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 46 H 0.18 3.66 4.51 -56.29 -0.25 3.41 16 47 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 48 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 49 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 50 H 0.14 2.89 6.17 -52.48 -0.32 2.56 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -26.43 394.55 -9.54 -35.96 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -7.29 Total: 15.76 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.73 Total: -12.28 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.13 Total: -43.48 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.32 Total: -16.14 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -26.43 -9.54 -35.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451610314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.140 kcal (2) G-P(sol) polarization free energy of solvation -26.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds