Wall clock time and date at job start Sat Apr 11 2020 07:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47197 * 2 1 4 4 C 1.46495 * 120.00240 * 275.00166 * 3 2 1 5 5 C 1.50702 * 109.47024 * 84.99848 * 4 3 2 6 6 H 1.07990 * 120.00126 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00004 * 180.02562 * 5 4 3 8 8 N 1.31522 * 120.00023 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00025 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47128 * 60.00056 * 9 7 5 11 11 H 1.48502 * 109.47153 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47070 * 300.00016 * 9 7 5 13 13 S 1.65602 * 119.99939 * 95.00414 * 3 2 1 14 14 O 1.42105 * 106.40244 * 203.54231 * 13 3 2 15 15 O 1.42103 * 106.40109 * 336.45511 * 13 3 2 16 16 N 1.65601 * 107.21978 * 89.99773 * 13 3 2 17 17 C 1.47253 * 135.94040 * 90.00190 * 16 13 3 18 18 C 1.52498 * 87.73255 * 206.27935 * 17 16 13 19 19 C 1.53351 * 115.83422 * 218.59323 * 18 17 16 20 20 C 1.55114 * 103.91655 * 205.24375 * 19 18 17 21 21 C 1.54974 * 102.89498 * 37.09409 * 20 19 18 22 22 C 1.52957 * 116.07847 * 90.86316 * 18 17 16 23 23 C 1.47248 * 135.94623 * 269.63091 * 16 13 3 24 24 H 1.09004 * 113.50471 * 39.00579 * 23 16 13 25 25 C 1.52998 * 113.50852 * 268.43922 * 23 16 13 26 26 C 1.53005 * 109.46952 * 53.71960 * 25 23 16 27 27 C 1.53000 * 109.46691 * 173.71553 * 25 23 16 28 28 H 1.08998 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46912 * 299.99852 * 1 2 3 30 30 H 1.08996 * 109.47452 * 59.99434 * 1 2 3 31 31 H 1.09004 * 109.47390 * 120.00256 * 2 1 3 32 32 H 1.09000 * 109.46912 * 240.00148 * 2 1 3 33 33 H 1.09000 * 109.47290 * 205.00062 * 4 3 2 34 34 H 1.09004 * 109.47019 * 324.99925 * 4 3 2 35 35 H 0.96994 * 119.99998 * 179.97438 * 8 7 5 36 36 H 1.08999 * 113.51194 * 320.99399 * 17 16 13 37 37 H 1.09001 * 113.50478 * 91.56547 * 17 16 13 38 38 H 1.09002 * 110.53856 * 323.85337 * 19 18 17 39 39 H 1.08997 * 110.53818 * 86.63430 * 19 18 17 40 40 H 1.09004 * 110.72956 * 278.74128 * 20 19 18 41 41 H 1.09000 * 110.88444 * 155.51590 * 20 19 18 42 42 H 1.09005 * 110.47856 * 203.87827 * 21 20 19 43 43 H 1.09000 * 110.58606 * 81.31356 * 21 20 19 44 44 H 1.09002 * 110.11653 * 250.54076 * 22 18 17 45 45 H 1.08992 * 110.11431 * 12.19325 * 22 18 17 46 46 H 1.08998 * 109.47314 * 293.71775 * 25 23 16 47 47 H 1.08998 * 109.47262 * 59.99783 * 26 25 23 48 48 H 1.09004 * 109.46636 * 179.97438 * 26 25 23 49 49 H 1.08999 * 109.47227 * 299.99477 * 26 25 23 50 50 H 1.09003 * 109.46813 * 173.33242 * 27 25 23 51 51 H 1.08998 * 109.47783 * 293.33354 * 27 25 23 52 52 H 1.08996 * 109.47082 * 53.34253 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 0.8359 2.7289 -1.6355 6 1 -0.0226 2.5949 -0.9942 7 6 0.7223 3.4674 -2.7943 8 7 1.7680 3.6310 -3.5750 9 14 -0.9165 4.2367 -3.2546 10 1 -1.3389 5.1779 -2.1865 11 1 -0.7748 4.9740 -4.5358 12 1 -1.9385 3.1701 -3.4071 13 16 2.4123 2.1202 1.4287 14 8 2.3057 3.5186 1.1999 15 8 1.6869 1.4415 2.4448 16 7 4.0145 1.8136 1.7137 17 6 5.2919 2.4687 1.3858 18 6 5.9500 1.0962 1.4784 19 6 7.3428 1.0647 2.1193 20 6 8.0032 -0.2019 1.5147 21 6 7.4779 -0.2033 0.0567 22 6 6.0201 0.2949 0.1774 23 6 4.7846 0.7703 2.4114 24 1 4.3819 -0.2331 2.2729 25 6 5.0672 1.0988 3.8787 26 6 3.7525 1.4226 4.5912 27 6 5.7294 -0.1048 4.5523 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.9080 2.8919 -1.1512 34 1 2.4689 1.4183 -2.0480 35 1 1.6879 4.1502 -4.3904 36 1 5.3167 2.8960 0.3834 37 1 5.6317 3.1663 2.1512 38 1 7.9082 1.9567 1.8494 39 1 7.2633 0.9745 3.2026 40 1 7.6763 -1.0972 2.0434 41 1 9.0900 -0.1199 1.5331 42 1 7.5034 -1.2115 -0.3569 43 1 8.0633 0.4767 -0.5623 44 1 5.3367 -0.5531 0.2220 45 1 5.7710 0.9335 -0.6700 46 1 5.7334 1.9596 3.9365 47 1 3.0863 0.5618 4.5334 48 1 3.9538 1.6562 5.6367 49 1 3.2807 2.2801 4.1114 50 1 6.0379 0.1680 5.5616 51 1 5.0195 -0.9305 4.6001 52 1 6.6026 -0.4091 3.9754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452100401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:41 Heat of formation + Delta-G solvation = -57.861941 kcal Electronic energy + Delta-G solvation = -31485.907085 eV Core-core repulsion = 27612.732564 eV Total energy + Delta-G solvation = -3873.174521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03477 -36.54942 -36.09227 -35.93259 -35.08605 -34.23788 -32.57072 -29.78782 -29.08877 -28.44105 -26.95362 -26.67056 -25.73746 -24.01698 -22.75336 -21.80853 -21.39896 -20.07558 -18.50837 -17.82124 -17.16368 -16.85303 -16.41509 -16.11969 -15.54957 -15.19241 -14.78089 -14.51444 -14.13131 -14.03759 -13.71802 -13.47508 -13.07945 -13.02652 -12.97720 -12.55494 -12.33386 -12.16713 -12.11161 -11.93646 -11.79473 -11.48320 -11.46458 -11.39513 -11.21517 -11.15086 -11.11865 -11.08159 -10.96791 -10.94171 -10.90425 -10.73585 -10.56921 -10.43298 -10.40981 -10.27925 -9.93134 -9.88030 -9.60033 -8.77036 -8.40845 -8.04752 -6.04009 -4.06902 1.19316 3.34473 3.38040 3.42761 3.53003 4.11517 4.18036 4.42476 4.46289 4.60293 4.69393 4.85250 4.88216 5.01199 5.10481 5.25519 5.30082 5.33355 5.41306 5.44958 5.47080 5.58013 5.59234 5.62309 5.71192 5.77851 5.82644 5.83115 5.85110 5.87226 5.91264 5.96166 5.99301 6.02046 6.11099 6.13133 6.15446 6.22941 6.29197 6.30639 6.41425 6.43121 6.45863 6.73804 6.85065 7.00261 7.25304 7.44918 7.67170 7.93939 8.24103 8.94691 9.57533 11.04700 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.004178 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.173617 B = 6699.427610 C = 7517.993805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.138 3.862 3 N -0.990 5.990 4 C 0.261 3.739 5 C -0.525 4.525 6 H 0.061 0.939 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 S 2.796 3.204 14 O -0.964 6.964 15 O -0.989 6.989 16 N -1.045 6.045 17 C 0.138 3.862 18 C -0.091 4.091 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.098 4.098 23 C 0.173 3.827 24 H 0.081 0.919 25 C -0.101 4.101 26 C -0.143 4.143 27 C -0.149 4.149 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.056 0.944 51 H 0.057 0.943 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.473 -10.017 11.963 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.011 3.989 3 N -0.832 5.832 4 C 0.138 3.862 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.807 3.193 14 O -0.948 6.948 15 O -0.973 6.973 16 N -0.882 5.882 17 C 0.012 3.988 18 C -0.093 4.093 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.135 4.135 23 C 0.066 3.934 24 H 0.099 0.901 25 C -0.121 4.121 26 C -0.201 4.201 27 C -0.206 4.206 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.075 0.925 51 H 0.076 0.924 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.661 -9.346 12.262 19.950 hybrid contribution -0.888 0.423 -0.687 1.199 sum 11.773 -8.923 11.576 18.768 Atomic orbital electron populations 1.22255 0.96406 1.00776 1.03639 1.20912 0.94747 0.82376 1.00841 1.57823 1.77877 1.22989 1.24465 1.19001 0.97379 0.90790 0.78981 1.21485 0.96323 1.31888 1.06706 0.92062 1.24918 0.96804 0.95997 0.96240 1.69908 1.29276 1.40741 1.13660 0.86626 0.83952 0.79587 0.77715 1.20056 1.21186 1.20169 1.01498 0.71481 0.73448 0.72862 1.93616 1.84908 1.30449 1.85790 1.93532 1.69650 1.76558 1.57545 1.60953 1.21430 1.37869 1.67947 1.22397 0.80592 0.94491 1.01271 1.22340 0.93881 0.96760 0.96335 1.22453 0.94302 0.98391 1.00824 1.22507 0.99500 0.97962 0.96033 1.22414 0.96044 1.00919 0.96699 1.21789 0.96573 0.99347 0.95812 1.21933 0.88803 0.91528 0.91103 0.90065 1.21363 0.97946 0.99079 0.93703 1.21790 0.96437 1.02486 0.99342 1.21932 1.00785 0.97645 1.00262 0.93135 0.92885 0.90296 0.92416 0.91255 0.94819 0.94871 0.92722 0.90311 0.90387 0.91095 0.90003 0.91636 0.91890 0.91874 0.91628 0.91378 0.90716 0.90410 0.91629 0.92823 0.93309 0.92481 0.92425 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.83 37.16 0.37 -2.76 16 2 C 0.14 2.46 6.09 -4.04 -0.02 2.44 16 3 N -0.99 -20.91 2.86 -115.66 -0.33 -21.24 16 4 C 0.26 6.55 5.12 -5.20 -0.03 6.52 16 5 C -0.52 -14.71 8.41 -34.44 -0.29 -15.00 16 6 H 0.06 1.72 6.89 -52.49 -0.36 1.36 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 S 2.80 58.12 6.11 -107.50 -0.66 57.46 16 14 O -0.96 -24.33 17.11 -57.17 -0.98 -25.31 16 15 O -0.99 -20.86 15.36 -57.17 -0.88 -21.74 16 16 N -1.05 -16.62 3.41 -117.68 -0.40 -17.02 16 17 C 0.14 1.87 7.62 -7.92 -0.06 1.81 16 18 C -0.09 -0.99 1.16 -154.71 -0.18 -1.17 16 19 C -0.12 -1.02 5.31 -25.43 -0.14 -1.15 16 20 C -0.12 -0.94 6.84 -24.57 -0.17 -1.11 16 21 C -0.12 -1.10 6.85 -24.88 -0.17 -1.27 16 22 C -0.10 -1.08 6.33 -25.95 -0.16 -1.25 16 23 C 0.17 2.13 3.42 -71.65 -0.24 1.89 16 24 H 0.08 0.99 7.91 -51.93 -0.41 0.57 16 25 C -0.10 -1.09 2.04 -90.62 -0.19 -1.27 16 26 C -0.14 -1.86 8.15 37.16 0.30 -1.56 16 27 C -0.15 -1.22 8.62 37.16 0.32 -0.90 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.61 6.59 -51.93 -0.34 1.26 16 31 H 0.06 0.91 7.61 -51.93 -0.40 0.51 16 32 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 33 H 0.03 0.91 7.61 -51.93 -0.40 0.52 16 34 H 0.03 0.84 8.00 -51.93 -0.42 0.43 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 36 H 0.08 1.14 7.91 -51.93 -0.41 0.73 16 37 H 0.08 0.94 7.51 -51.93 -0.39 0.55 16 38 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 39 H 0.08 0.62 4.09 -51.93 -0.21 0.41 16 40 H 0.06 0.48 7.84 -51.93 -0.41 0.07 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.77 7.82 -51.93 -0.41 0.36 16 45 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 46 H 0.08 0.78 6.30 -51.93 -0.33 0.45 16 47 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.05 0.76 6.46 -51.93 -0.34 0.42 16 50 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.06 0.47 5.69 -51.93 -0.30 0.17 16 LS Contribution 403.88 15.07 6.09 6.09 Total: -1.00 -32.86 403.88 -11.48 -44.35 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -9.28 Total: -1.04 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.76 Total: -13.11 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 0.01 Total: -63.70 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -1.86 Total: -47.04 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 58.12 SS G_CDS: -0.66 Total: 57.46 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.86 -11.48 -44.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452100401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.515 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds