Wall clock time and date at job start Sat Apr 11 2020 07:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46896 * 111.00317 * 2 1 4 4 C 1.38449 * 110.99670 * 123.95428 * 2 1 3 5 5 C 1.39502 * 120.95385 * 300.24114 * 4 2 1 6 6 C 1.37773 * 119.20979 * 180.23535 * 5 4 2 7 7 N 1.32180 * 121.22004 * 359.76923 * 6 5 4 8 8 C 1.31635 * 122.12117 * 359.97438 * 7 6 5 9 9 C 1.39528 * 120.62639 * 359.97438 * 8 7 6 10 10 C 1.47452 * 120.63492 * 179.97438 * 9 8 7 11 11 O 1.21603 * 119.99503 * 132.64134 * 10 9 8 12 12 N 1.34772 * 120.00292 * 312.65364 * 10 9 8 13 13 C 1.46528 * 120.97688 * 354.66407 * 12 10 9 14 14 C 1.51784 * 110.13763 * 233.74833 * 13 12 10 15 15 C 1.49514 * 115.07488 * 318.40950 * 14 13 12 16 16 H 1.09003 * 105.91952 * 157.42773 * 15 14 13 17 17 C 1.52672 * 116.96885 * 40.03709 * 15 14 13 18 18 H 1.09001 * 112.49652 * 82.62072 * 17 15 14 19 19 C 1.56116 * 101.71434 * 202.84135 * 17 15 14 20 20 C 1.55099 * 101.12182 * 37.82571 * 19 17 15 21 21 N 1.46252 * 114.17992 * 272.07530 * 15 14 13 22 22 C 1.36937 * 125.96523 * 315.61701 * 21 15 14 23 23 H 1.07998 * 119.99554 * 359.97438 * 22 21 15 24 24 C 1.38808 * 120.00316 * 179.97438 * 22 21 15 25 25 N 1.31621 * 119.99739 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00207 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47193 * 89.99616 * 26 24 22 28 28 H 1.48501 * 109.47148 * 209.99920 * 26 24 22 29 29 H 1.48504 * 109.46954 * 329.99544 * 26 24 22 30 30 C 1.46694 * 120.97786 * 174.64888 * 12 10 9 31 31 H 1.09003 * 109.47435 * 296.05038 * 1 2 3 32 32 H 1.08999 * 109.47080 * 56.04498 * 1 2 3 33 33 H 1.08997 * 109.47620 * 176.04987 * 1 2 3 34 34 H 1.09002 * 109.47241 * 183.95402 * 3 2 1 35 35 H 1.09002 * 109.46893 * 303.95196 * 3 2 1 36 36 H 1.08991 * 109.47243 * 63.95495 * 3 2 1 37 37 H 1.07990 * 120.39416 * 0.02562 * 5 4 2 38 38 H 1.07997 * 119.38787 * 179.74605 * 6 5 4 39 39 H 1.08001 * 119.68565 * 180.02562 * 8 7 6 40 40 H 1.08990 * 109.36113 * 353.95663 * 13 12 10 41 41 H 1.09000 * 109.35786 * 113.54765 * 13 12 10 42 42 H 1.09008 * 108.35882 * 79.85734 * 14 13 12 43 43 H 1.08994 * 108.36301 * 196.95292 * 14 13 12 44 44 H 1.08995 * 111.10041 * 155.80405 * 19 17 15 45 45 H 1.09010 * 111.09522 * 279.85055 * 19 17 15 46 46 H 1.08990 * 110.34872 * 81.82384 * 20 19 17 47 47 H 1.08999 * 110.34800 * 204.10116 * 20 19 17 48 48 H 0.97005 * 119.99640 * 180.02562 * 25 24 22 49 49 H 1.09006 * 109.52926 * 1.29605 * 30 12 10 50 50 H 1.08998 * 109.53182 * 241.08250 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9650 -0.7219 1.0722 5 6 1.6596 -0.3594 2.3842 6 6 2.1767 -1.1003 3.4242 7 7 2.9510 -2.1480 3.2004 8 6 3.2670 -2.5375 1.9834 9 6 2.7879 -1.8475 0.8693 10 6 3.1423 -2.2833 -0.4940 11 8 2.2779 -2.3868 -1.3431 12 7 4.4239 -2.5672 -0.7990 13 6 5.4982 -2.3400 0.1713 14 6 6.5850 -1.4780 -0.4447 15 6 6.9342 -1.8133 -1.8593 16 1 7.3843 -0.9130 -2.2777 17 6 5.7788 -2.1681 -2.7922 18 1 5.2867 -1.2855 -3.2009 19 6 6.5057 -3.0014 -3.8942 20 6 7.5355 -3.7892 -3.0431 21 7 7.9661 -2.8408 -1.9942 22 6 9.1291 -2.9120 -1.2747 23 1 9.3488 -2.1631 -0.5282 24 6 10.0255 -3.9465 -1.5049 25 7 9.7575 -4.8593 -2.4144 26 14 11.6123 -4.0431 -0.5239 27 1 11.3862 -4.8446 0.7056 28 1 12.6656 -4.6879 -1.3485 29 1 12.0466 -2.6733 -0.1490 30 6 4.7846 -3.1130 -2.1120 31 1 -0.3634 0.4513 0.9233 32 1 -0.3633 0.5740 -0.8524 33 1 -0.3634 -1.0252 -0.0708 34 1 3.0828 1.3431 -0.0709 35 1 1.5898 1.9163 -0.8525 36 1 1.7045 1.8723 0.9232 37 1 1.0282 0.4940 2.5823 38 1 1.9455 -0.8197 4.4411 39 1 3.9026 -3.3998 1.8459 40 1 5.0920 -1.8371 1.0488 41 1 5.9232 -3.2980 0.4707 42 1 6.2602 -0.4380 -0.4085 43 1 7.4848 -1.5735 0.1630 44 1 5.8130 -3.6767 -4.3963 45 1 7.0055 -2.3510 -4.6122 46 1 7.0656 -4.6637 -2.5934 47 1 8.3851 -4.0880 -3.6571 48 1 10.3838 -5.5825 -2.5750 49 1 3.8893 -3.2042 -2.7271 50 1 5.2424 -4.0941 -1.9856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036871147.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:23:25 Heat of formation + Delta-G solvation = 41.202606 kcal Electronic energy + Delta-G solvation = -31815.348396 eV Core-core repulsion = 27843.318435 eV Total energy + Delta-G solvation = -3972.029960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.15271 -40.96625 -39.41205 -38.45262 -36.60695 -34.68263 -33.35034 -32.83736 -32.12995 -30.99888 -29.28609 -28.59544 -27.18902 -26.36942 -25.95255 -24.67976 -24.04923 -22.65495 -21.90836 -21.24768 -19.81887 -18.75851 -18.27410 -18.10617 -17.70415 -17.26035 -16.89927 -16.28055 -16.17460 -15.88194 -15.71589 -15.61118 -15.57552 -15.10771 -14.77505 -14.66686 -14.54211 -14.17398 -14.04269 -13.91443 -13.37945 -13.29447 -13.24096 -13.05025 -12.99782 -12.91924 -12.72332 -12.69926 -12.49427 -12.18008 -11.94568 -11.66757 -11.58860 -11.41271 -11.30428 -11.19786 -10.66090 -10.65614 -10.50521 -10.18674 -9.61047 -9.52480 -8.78240 -7.73783 -5.13838 -0.29016 -0.00390 1.49509 1.50024 1.58356 1.67330 1.97242 2.52605 2.65200 2.66411 3.26499 3.37147 3.49963 3.64572 3.76941 3.79939 3.85316 3.89269 4.01426 4.03301 4.12633 4.23923 4.31104 4.32645 4.40909 4.46128 4.51157 4.54811 4.56757 4.59922 4.62363 4.74293 4.79152 4.88480 4.90325 4.92321 4.93968 5.02818 5.10388 5.15962 5.34017 5.40240 5.42839 5.50890 5.56731 5.69363 5.82739 5.86908 6.15080 6.33898 6.41834 6.81287 7.12875 7.15856 7.84708 8.51012 9.30889 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.003305 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.154366 B = 8470.227059 C = 9389.434050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.534 5.534 3 C 0.031 3.969 4 C 0.178 3.822 5 C -0.201 4.201 6 C 0.127 3.873 7 N -0.505 5.505 8 C 0.137 3.863 9 C -0.181 4.181 10 C 0.575 3.425 11 O -0.553 6.553 12 N -0.599 5.599 13 C 0.124 3.876 14 C -0.129 4.129 15 C 0.170 3.830 16 H -0.004 1.004 17 C -0.093 4.093 18 H 0.094 0.906 19 C -0.129 4.129 20 C 0.162 3.838 21 N -0.611 5.611 22 C -0.224 4.224 23 H 0.083 0.917 24 C -0.065 4.065 25 N -0.949 5.949 26 Si 0.972 3.028 27 H -0.288 1.288 28 H -0.298 1.298 29 H -0.270 1.270 30 C 0.131 3.869 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.169 0.831 38 H 0.195 0.805 39 H 0.163 0.837 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.065 0.935 46 H -0.008 1.008 47 H 0.062 0.938 48 H 0.244 0.756 49 H 0.088 0.912 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.984 12.517 9.177 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.255 5.255 3 C -0.115 4.115 4 C 0.075 3.925 5 C -0.223 4.223 6 C -0.028 4.028 7 N -0.214 5.214 8 C -0.021 4.021 9 C -0.187 4.187 10 C 0.363 3.637 11 O -0.431 6.431 12 N -0.331 5.331 13 C 0.002 3.998 14 C -0.168 4.168 15 C 0.063 3.937 16 H 0.014 0.986 17 C -0.113 4.113 18 H 0.112 0.888 19 C -0.168 4.168 20 C 0.037 3.963 21 N -0.336 5.336 22 C -0.353 4.353 23 H 0.101 0.899 24 C -0.258 4.258 25 N -0.599 5.599 26 Si 0.801 3.199 27 H -0.215 1.215 28 H -0.225 1.225 29 H -0.195 1.195 30 C 0.008 3.992 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.186 0.814 38 H 0.212 0.788 39 H 0.180 0.820 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.010 0.990 47 H 0.080 0.920 48 H 0.054 0.946 49 H 0.107 0.893 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.783 11.699 9.001 23.889 hybrid contribution 0.823 0.209 0.098 0.854 sum -17.960 11.907 9.099 23.391 Atomic orbital electron populations 1.22420 0.83473 1.02488 1.02477 1.59024 1.10450 1.15419 1.40626 1.22497 1.00420 0.85816 1.02720 1.19160 0.91344 0.91531 0.90485 1.22911 1.03572 1.03524 0.92250 1.23373 0.89704 0.88459 1.01268 1.67791 1.14368 1.16003 1.23254 1.23078 0.94730 0.97859 0.86467 1.20963 1.03643 0.99810 0.94287 1.18049 0.81716 0.76453 0.87476 1.90729 1.48826 1.53563 1.49972 1.47868 1.06176 1.63190 1.15827 1.21350 0.87160 1.00100 0.91225 1.21107 0.98721 0.99367 0.97634 1.19605 0.88950 0.91413 0.93684 0.98591 1.22226 0.94556 0.98616 0.95875 0.88752 1.23157 0.97974 0.98928 0.96772 1.21668 0.95177 0.89888 0.89549 1.44754 1.17568 1.28807 1.42439 1.19311 0.94356 1.07646 1.14019 0.89925 1.25508 1.01989 0.97504 1.00778 1.70090 1.37141 1.15897 1.36750 0.85166 0.79441 0.77728 0.77545 1.21536 1.22531 1.19492 1.21498 0.98236 0.96009 0.83435 0.92714 0.89476 0.92665 0.92442 0.89356 0.92706 0.81371 0.78814 0.81956 0.88726 0.92200 0.91343 0.91271 0.89696 0.91601 0.98981 0.91987 0.94606 0.89339 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.34 127.69 1.19 1.80 16 2 N -0.53 -11.30 4.02 -743.70 -2.99 -14.29 16 3 C 0.03 0.49 9.38 127.69 1.20 1.69 16 4 C 0.18 3.88 4.71 39.05 0.18 4.06 16 5 C -0.20 -3.00 8.66 22.46 0.19 -2.81 16 6 C 0.13 1.97 11.15 84.53 0.94 2.91 16 7 N -0.51 -11.07 10.34 -195.07 -2.02 -13.09 16 8 C 0.14 3.32 8.70 85.03 0.74 4.06 16 9 C -0.18 -4.75 4.91 -19.89 -0.10 -4.85 16 10 C 0.57 18.38 7.00 86.67 0.61 18.99 16 11 O -0.55 -20.73 15.93 -4.04 -0.06 -20.79 16 12 N -0.60 -19.13 2.94 -827.23 -2.44 -21.56 16 13 C 0.12 3.80 5.29 85.97 0.45 4.25 16 14 C -0.13 -4.38 5.62 29.08 0.16 -4.22 16 15 C 0.17 6.77 2.61 43.81 0.11 6.89 16 16 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 17 C -0.09 -3.24 3.69 -9.79 -0.04 -3.28 16 18 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 19 C -0.13 -4.80 6.46 32.39 0.21 -4.59 16 20 C 0.16 7.81 5.35 86.84 0.46 8.27 16 21 N -0.61 -30.01 3.32 -678.04 -2.25 -32.26 16 22 C -0.22 -12.01 9.59 84.03 0.81 -11.21 16 23 H 0.08 4.22 7.02 -2.91 -0.02 4.20 16 24 C -0.07 -3.61 5.49 84.86 0.47 -3.15 16 25 N -0.95 -55.80 10.18 21.65 0.22 -55.58 16 26 Si 0.97 44.99 29.55 68.60 2.03 47.01 16 27 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 C 0.13 4.46 5.55 86.38 0.48 4.94 16 31 H 0.05 0.60 7.17 -2.39 -0.02 0.58 16 32 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.19 8.12 -2.39 -0.02 1.17 16 36 H 0.05 0.60 7.42 -2.39 -0.02 0.58 16 37 H 0.17 1.41 7.16 -2.92 -0.02 1.38 16 38 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.16 3.85 7.25 -2.91 -0.02 3.82 16 40 H 0.09 2.49 5.05 -2.39 -0.01 2.48 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 42 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.07 2.56 6.64 -2.39 -0.02 2.54 16 44 H 0.08 2.75 7.98 -2.39 -0.02 2.73 16 45 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 46 H -0.01 -0.40 7.10 -2.39 -0.02 -0.42 16 47 H 0.06 3.45 6.10 -2.39 -0.01 3.43 16 48 H 0.24 14.10 8.31 -92.70 -0.77 13.33 16 49 H 0.09 2.99 7.01 -2.38 -0.02 2.97 16 50 H 0.06 2.30 6.49 -2.39 -0.02 2.28 16 Total: -1.00 -70.18 383.04 1.52 -68.66 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.94 Total: 18.14 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 8.08 Total: 23.77 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -9.47 Total: -136.78 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.79 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.18 1.52 -68.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036871147.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.860 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds